Wall clock time and date at job start Mon Mar 30 2020 03:42:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 109.47451 * 2 1
4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3
5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1
6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1
7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2
8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2
9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4
10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4
11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4
12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3
13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1
14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1
15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2
16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12
17 17 C 1.34856 * 125.89013 * 95.02478 * 16 15 14
18 18 C 1.40889 * 107.41426 * 180.02562 * 17 16 15
19 19 C 1.34846 * 107.41907 * 359.97438 * 18 17 16
20 20 N 1.36340 * 108.22235 * 359.74024 * 19 18 17
21 21 C 1.46501 * 125.64281 * 180.26577 * 20 19 18
22 22 H 1.08999 * 109.47215 * 175.07421 * 1 2 3
23 23 H 1.08996 * 109.46878 * 55.07545 * 1 2 3
24 24 H 1.08997 * 109.46791 * 295.07478 * 1 2 3
25 25 H 0.97001 * 120.00027 * 179.97438 * 7 6 4
26 26 H 0.97000 * 119.99493 * 359.97438 * 14 12 2
27 27 H 1.08995 * 109.47033 * 300.00320 * 15 14 12
28 28 H 1.08997 * 109.46818 * 59.99864 * 15 14 12
29 29 H 1.07996 * 126.28641 * 359.97438 * 17 16 15
30 30 H 1.07998 * 126.28907 * 180.02562 * 18 17 16
31 31 H 1.07998 * 125.88952 * 179.97438 * 19 18 17
32 32 H 1.08997 * 109.46845 * 270.19373 * 21 20 19
33 33 H 1.09006 * 109.46800 * 30.19011 * 21 20 19
34 34 H 1.08997 * 109.47639 * 150.19181 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2305
5 1 2.1339 -1.7856 -1.2297
6 6 2.3624 0.0123 -2.3573
7 7 2.7082 -0.6128 -3.4616
8 14 2.3182 1.8793 -2.3157
9 1 3.6038 2.3929 -1.7787
10 1 2.1127 2.4003 -3.6909
11 1 1.2029 2.3287 -1.4442
12 6 2.0324 -0.7104 1.2305
13 8 2.7296 -1.6966 1.1192
14 7 1.7068 -0.2500 2.4546
15 6 2.1956 -0.9403 3.6507
16 6 1.6937 -0.2297 4.8812
17 6 0.5869 -0.5490 5.5824
18 6 0.4863 0.3644 6.6504
19 6 1.5356 1.2067 6.5615
20 7 2.2836 0.8432 5.4811
21 6 3.5153 1.4997 5.0357
22 1 -0.3633 -1.0239 -0.0882
23 1 -0.3633 0.5883 -0.8426
24 1 -0.3633 0.4355 0.9308
25 1 2.9400 -0.1044 -4.2545
26 1 1.1495 0.5389 2.5435
27 1 1.8327 -1.9681 3.6508
28 1 3.2856 -0.9399 3.6505
29 1 -0.0969 -1.3560 5.3647
30 1 -0.2884 0.3855 7.4026
31 1 1.7489 2.0254 7.2327
32 1 3.2690 2.2962 4.3337
33 1 4.0338 1.9217 5.8967
34 1 4.1594 0.7697 4.5456
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000829351869.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:09
Heat of formation + Delta-G solvation = -15.947838 kcal
Electronic energy + Delta-G solvation = -16460.460463 eV
Core-core repulsion = 13779.170612 eV
Total energy + Delta-G solvation = -2681.289851 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.18021 -40.49356 -35.80616 -35.62358 -33.70774 -33.37827 -30.78474 -27.25493
-27.19413 -26.58076 -23.94316 -21.49212 -21.11720 -20.17902 -19.13406 -18.30890
-17.21535 -17.00277 -16.21681 -16.15831 -15.68910 -15.25114 -14.71296 -14.41068
-14.26322 -14.05670 -13.73611 -13.33228 -13.13413 -13.09045 -12.95360 -12.89027
-12.70101 -12.58173 -12.14032 -11.76070 -11.26085 -10.76044 -10.54178 -10.04804
-9.50660 -9.02883 -8.27066 -6.33687 1.14627 1.35394 1.38442 1.48938
1.87288 2.03975 2.08426 2.35442 2.60451 3.10571 3.69451 4.00243
4.13790 4.20706 4.37898 4.40024 4.41863 4.61066 4.73047 4.73696
4.74684 4.81483 4.86565 5.13088 5.37768 5.42067 5.48296 5.50326
5.58007 6.07710 6.25248 6.27494 6.49037 6.65125 6.83507 7.27555
7.48951 8.91048
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036829 B = 0.005843 C = 0.005634
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 760.088532 B = 4790.546787 C = 4968.639171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.007 4.007
3 H 0.072 0.928
4 C -0.507 4.507
5 H 0.022 0.978
6 C 0.006 3.994
7 N -0.952 5.952
8 Si 0.947 3.053
9 H -0.268 1.268
10 H -0.285 1.285
11 H -0.225 1.225
12 C 0.520 3.480
13 O -0.583 6.583
14 N -0.720 5.720
15 C 0.195 3.805
16 C -0.021 4.021
17 C -0.188 4.188
18 C -0.220 4.220
19 C -0.001 4.001
20 N -0.445 5.445
21 C 0.063 3.937
22 H 0.037 0.963
23 H 0.057 0.943
24 H 0.072 0.928
25 H 0.267 0.733
26 H 0.409 0.591
27 H 0.073 0.927
28 H 0.061 0.939
29 H 0.136 0.864
30 H 0.152 0.848
31 H 0.195 0.805
32 H 0.080 0.920
33 H 0.111 0.889
34 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.411 10.372 21.437 24.058
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.029 4.029
3 H 0.089 0.911
4 C -0.545 4.545
5 H 0.041 0.959
6 C -0.191 4.191
7 N -0.592 5.592
8 Si 0.769 3.231
9 H -0.193 1.193
10 H -0.211 1.211
11 H -0.147 1.147
12 C 0.308 3.692
13 O -0.462 6.462
14 N -0.374 5.374
15 C 0.071 3.929
16 C -0.133 4.133
17 C -0.214 4.214
18 C -0.244 4.244
19 C -0.132 4.132
20 N -0.121 5.121
21 C -0.078 4.078
22 H 0.057 0.943
23 H 0.076 0.924
24 H 0.090 0.910
25 H 0.076 0.924
26 H 0.246 0.754
27 H 0.092 0.908
28 H 0.079 0.921
29 H 0.154 0.846
30 H 0.170 0.830
31 H 0.212 0.788
32 H 0.098 0.902
33 H 0.130 0.870
34 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -2.513 9.838 21.058 23.378
hybrid contribution 0.105 0.329 -0.637 0.725
sum -2.408 10.167 20.421 22.939
Atomic orbital electron populations
1.21828 0.93920 1.01158 1.01596 1.19324 0.96182 0.96940 0.90469
0.91053 1.20884 1.43501 0.93818 0.96338 0.95940 1.26084 0.93949
1.04649 0.94370 1.70077 1.47889 1.38411 1.02792 0.85758 0.80530
0.78473 0.78366 1.19286 1.21073 1.14746 1.21527 0.78518 0.83903
0.85205 1.90573 1.39615 1.28584 1.87384 1.46151 1.54415 1.32598
1.04268 1.19448 0.98192 0.95145 0.80069 1.20062 0.98654 0.95428
0.99139 1.20987 0.98561 1.03319 0.98545 1.21161 1.01913 0.99091
1.02250 1.22398 0.94273 1.03427 0.93101 1.44169 1.21084 1.24161
1.22666 1.22247 0.84222 0.98508 1.02804 0.94340 0.92387 0.90967
0.92392 0.75448 0.90849 0.92127 0.84631 0.83036 0.78832 0.90150
0.87035 0.90640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.86 9.12 71.98 0.66 -4.20 16
2 C -0.01 -0.34 2.30 -12.28 -0.03 -0.37 16
3 H 0.07 3.00 5.29 -2.39 -0.01 2.99 16
4 C -0.51 -30.29 8.36 25.60 0.21 -30.07 16
5 H 0.02 1.58 7.61 -2.91 -0.02 1.55 16
6 C 0.01 0.35 5.47 84.66 0.46 0.81 16
7 N -0.95 -61.08 13.96 21.45 0.30 -60.79 16
8 Si 0.95 42.27 26.99 68.60 1.85 44.12 16
9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
11 H -0.22 -8.56 6.82 99.48 0.68 -7.88 16
12 C 0.52 23.02 7.15 87.66 0.63 23.65 16
13 O -0.58 -31.74 15.77 -3.04 -0.05 -31.79 16
14 N -0.72 -23.29 5.41 -466.80 -2.53 -25.81 16
15 C 0.20 5.72 5.83 85.63 0.50 6.22 16
16 C -0.02 -0.52 6.26 41.08 0.26 -0.27 16
17 C -0.19 -4.43 10.77 22.14 0.24 -4.19 16
18 C -0.22 -4.29 10.86 22.14 0.24 -4.05 16
19 C 0.00 -0.01 11.43 83.21 0.95 0.94 16
20 N -0.45 -8.77 3.15 -533.25 -1.68 -10.45 16
21 C 0.06 0.92 10.92 127.77 1.39 2.31 16
22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
23 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
24 H 0.07 2.11 7.43 -2.39 -0.02 2.09 16
25 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16
26 H 0.41 11.01 7.82 -92.71 -0.73 10.29 16
27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
28 H 0.06 1.83 7.20 -2.39 -0.02 1.82 16
29 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16
30 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16
31 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16
32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16
34 H 0.07 1.26 7.11 -2.39 -0.02 1.25 16
Total: -1.00 -78.09 290.43 3.75 -74.34
By element:
Atomic # 1 Polarization: 19.25 SS G_CDS: 0.34 Total: 19.59 kcal
Atomic # 6 Polarization: -14.73 SS G_CDS: 5.51 Total: -9.21 kcal
Atomic # 7 Polarization: -93.14 SS G_CDS: -3.90 Total: -97.04 kcal
Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.79 kcal
Atomic # 14 Polarization: 42.27 SS G_CDS: 1.85 Total: 44.12 kcal
Total: -78.09 3.75 -74.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829351869.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.388 kcal
(2) G-P(sol) polarization free energy of solvation -78.090 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.336 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds