Wall clock time and date at job start Mon Mar 30 2020 03:42:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46829 * 2 1
4 4 N 1.46501 * 109.46858 * 119.99676 * 2 1 3
5 5 C 1.34775 * 120.00285 * 275.00088 * 4 2 1
6 6 O 1.21283 * 119.99922 * 0.02562 * 5 4 2
7 7 C 1.50702 * 120.00371 * 180.02562 * 5 4 2
8 8 H 1.09002 * 109.46605 * 300.00213 * 7 5 4
9 9 C 1.53000 * 109.47243 * 59.99776 * 7 5 4
10 10 C 1.50697 * 109.47214 * 180.02562 * 7 5 4
11 11 H 1.08003 * 120.00225 * 0.02562 * 10 7 5
12 12 C 1.37878 * 119.99828 * 179.97438 * 10 7 5
13 13 N 1.31512 * 120.00127 * 0.02562 * 12 10 7
14 14 Si 1.86804 * 119.99875 * 179.97438 * 12 10 7
15 15 H 1.48504 * 109.46985 * 0.02562 * 14 12 10
16 16 H 1.48499 * 109.47033 * 120.00323 * 14 12 10
17 17 H 1.48502 * 109.47118 * 240.00258 * 14 12 10
18 18 C 1.50689 * 109.47484 * 239.99920 * 2 1 3
19 19 C 1.34858 * 125.89060 * 274.95850 * 18 2 1
20 20 C 1.40900 * 107.41627 * 179.80426 * 19 18 2
21 21 C 1.34850 * 107.41621 * 0.37840 * 20 19 18
22 22 N 1.36341 * 125.89234 * 94.99757 * 18 2 1
23 23 H 0.97004 * 125.63352 * 359.94553 * 22 18 2
24 24 H 1.09000 * 109.46943 * 60.00044 * 1 2 3
25 25 H 1.09003 * 109.46829 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47391 * 300.00365 * 1 2 3
27 27 H 0.96996 * 119.99780 * 95.00518 * 4 2 1
28 28 H 1.08998 * 109.47077 * 300.00511 * 9 7 5
29 29 H 1.09001 * 109.46770 * 59.99895 * 9 7 5
30 30 H 1.08996 * 109.47030 * 179.97438 * 9 7 5
31 31 H 0.96997 * 120.00112 * 179.97438 * 13 12 10
32 32 H 1.07991 * 126.29023 * 0.02562 * 19 18 2
33 33 H 1.07999 * 126.29093 * 180.24309 * 20 19 18
34 34 H 1.08002 * 125.89234 * 179.89015 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0182 2.3572
6 8 1.8581 1.1584 2.4117
7 6 2.6498 -0.7284 3.5876
8 1 1.9775 -1.5507 3.8326
9 6 4.0525 -1.2784 3.3216
10 6 2.6997 0.2398 4.7413
11 1 2.3972 1.2666 4.5981
12 6 3.1306 -0.1856 5.9800
13 7 3.4986 -1.4360 6.1546
14 14 3.1932 1.0148 7.4100
15 1 2.7310 2.3508 6.9554
16 1 2.3101 0.5309 8.5014
17 1 4.5878 1.1167 7.9101
18 6 2.0324 -0.7104 -1.2303
19 6 2.2069 -2.0414 -1.3589
20 6 2.6845 -2.2802 -2.6628
21 6 2.7916 -1.0852 -3.2785
22 7 2.3896 -0.1182 -2.4054
23 1 2.3620 0.8337 -2.5898
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5139 0.8899
27 1 2.2490 -1.6317 1.1527
28 1 4.0159 -1.9788 2.4872
29 1 4.7247 -0.4561 3.0765
30 1 4.4163 -1.7917 4.2116
31 1 3.8021 -1.7352 7.0259
32 1 2.0126 -2.7875 -0.6027
33 1 2.9233 -3.2430 -3.0898
34 1 3.1325 -0.9226 -4.2903
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000831361400.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:28
Heat of formation + Delta-G solvation = -2.392250 kcal
Electronic energy + Delta-G solvation = -16543.183760 eV
Core-core repulsion = 13862.481723 eV
Total energy + Delta-G solvation = -2680.702037 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.16365 -38.77948 -34.97920 -33.68718 -31.23741 -30.86253 -29.54948 -27.91060
-25.09534 -23.63492 -22.00045 -20.69681 -20.08035 -19.04101 -17.80309 -16.19245
-15.67408 -15.24478 -14.56253 -14.39301 -13.86143 -13.64157 -13.49282 -13.09851
-12.63814 -12.52355 -12.21331 -12.10143 -11.80969 -11.47600 -10.99583 -10.90832
-10.67365 -10.62878 -10.21223 -9.93447 -8.92570 -8.85089 -8.62931 -8.48466
-8.30989 -8.00424 -5.99976 -4.02910 2.24364 3.03227 3.21415 3.34312
3.41772 3.50204 3.75909 4.06204 4.50773 4.80036 5.14109 5.32097
5.33676 5.45467 5.53410 5.69411 5.77800 6.00991 6.21651 6.24292
6.35876 6.43436 6.67977 6.88581 6.93408 6.98551 7.08861 7.20630
7.51989 7.56389 7.80125 8.02851 8.19187 8.48799 9.06393 9.26502
9.62537 11.07703
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.046638 B = 0.005481 C = 0.005166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 600.230529 B = 5107.734603 C = 5418.546363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.210 3.790
3 H 0.084 0.916
4 N -0.735 5.735
5 C 0.522 3.478
6 O -0.548 6.548
7 C 0.029 3.971
8 H 0.053 0.947
9 C -0.132 4.132
10 C -0.499 4.499
11 H 0.074 0.926
12 C 0.057 3.943
13 N -0.896 5.896
14 Si 0.899 3.101
15 H -0.271 1.271
16 H -0.284 1.284
17 H -0.285 1.285
18 C 0.017 3.983
19 C -0.191 4.191
20 C -0.199 4.199
21 C -0.019 4.019
22 N -0.554 5.554
23 H 0.412 0.588
24 H 0.055 0.945
25 H 0.060 0.940
26 H 0.068 0.932
27 H 0.398 0.602
28 H 0.013 0.987
29 H 0.030 0.970
30 H 0.093 0.907
31 H 0.260 0.740
32 H 0.135 0.865
33 H 0.134 0.866
34 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.224 -1.522 -16.312 16.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.104 3.896
3 H 0.102 0.898
4 N -0.390 5.390
5 C 0.312 3.688
6 O -0.424 6.424
7 C 0.008 3.992
8 H 0.071 0.929
9 C -0.190 4.190
10 C -0.537 4.537
11 H 0.092 0.908
12 C -0.143 4.143
13 N -0.536 5.536
14 Si 0.727 3.273
15 H -0.196 1.196
16 H -0.211 1.211
17 H -0.211 1.211
18 C -0.096 4.096
19 C -0.216 4.216
20 C -0.224 4.224
21 C -0.150 4.150
22 N -0.149 5.149
23 H 0.249 0.751
24 H 0.074 0.926
25 H 0.079 0.921
26 H 0.087 0.913
27 H 0.233 0.767
28 H 0.032 0.968
29 H 0.049 0.951
30 H 0.111 0.889
31 H 0.070 0.930
32 H 0.153 0.847
33 H 0.152 0.848
34 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -2.369 -0.613 -16.141 16.325
hybrid contribution 0.238 0.431 0.512 0.710
sum -2.130 -0.182 -15.629 15.775
Atomic orbital electron populations
1.22145 0.94550 1.02449 1.02117 1.18961 0.93553 0.95988 0.81113
0.89761 1.46318 1.69644 1.14130 1.08877 1.22010 0.74964 0.87467
0.84328 1.90520 1.49914 1.16966 1.84983 1.18880 0.94705 0.96611
0.88971 0.92915 1.21738 0.97754 0.98725 1.00814 1.21188 1.42970
0.97042 0.92547 0.90751 1.24953 0.95268 0.95326 0.98752 1.69882
1.45081 1.15192 1.23451 0.86413 0.77499 0.81484 0.81936 1.19599
1.21069 1.21088 1.20457 1.07133 0.93338 0.88665 1.20652 1.08707
0.94132 0.98078 1.20885 1.08748 0.97255 0.95500 1.21782 1.08396
0.88282 0.96521 1.41901 1.52373 1.09184 1.11479 0.75146 0.92567
0.92095 0.91307 0.76661 0.96781 0.95094 0.88855 0.93050 0.84706
0.84822 0.82083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.15 9.47 37.16 0.35 -1.80 16
2 C 0.21 3.23 3.08 -69.09 -0.21 3.01 16
3 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16
4 N -0.73 -13.11 4.95 -54.94 -0.27 -13.38 16
5 C 0.52 11.95 7.11 -10.99 -0.08 11.87 16
6 O -0.55 -14.19 15.12 5.56 0.08 -14.10 16
7 C 0.03 0.74 2.64 -92.92 -0.24 0.49 16
8 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16
9 C -0.13 -3.09 8.87 37.16 0.33 -2.77 16
10 C -0.50 -14.25 8.37 -34.44 -0.29 -14.54 16
11 H 0.07 2.24 6.75 -52.48 -0.35 1.89 16
12 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16
13 N -0.90 -25.34 11.32 55.43 0.63 -24.71 16
14 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16
15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
18 C 0.02 0.23 6.22 -81.79 -0.51 -0.27 16
19 C -0.19 -2.54 10.00 -39.77 -0.40 -2.94 16
20 C -0.20 -2.34 10.86 -39.78 -0.43 -2.77 16
21 C -0.02 -0.20 11.94 -16.75 -0.20 -0.40 16
22 N -0.55 -6.09 6.07 -9.12 -0.06 -6.14 16
23 H 0.41 3.46 8.96 -40.82 -0.37 3.09 16
24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
27 H 0.40 6.42 6.75 -40.82 -0.28 6.15 16
28 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16
29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16
31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
32 H 0.14 1.69 7.42 -52.49 -0.39 1.30 16
33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16
34 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16
LS Contribution 288.42 15.07 4.35 4.35
Total: -1.00 -31.98 288.42 -6.65 -38.63
By element:
Atomic # 1 Polarization: 11.62 SS G_CDS: -4.58 Total: 7.04 kcal
Atomic # 6 Polarization: -6.82 SS G_CDS: -1.78 Total: -8.59 kcal
Atomic # 7 Polarization: -44.53 SS G_CDS: 0.30 Total: -44.23 kcal
Atomic # 8 Polarization: -14.19 SS G_CDS: 0.08 Total: -14.10 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -31.98 -6.65 -38.63 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000831361400.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.238 kcal
(2) G-P(sol) polarization free energy of solvation -31.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.255 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.392 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds