Wall clock time and date at job start Mon Mar 30 2020 03:42:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 109.46829 * 2 1
4 4 N 1.46501 * 109.46858 * 119.99676 * 2 1 3
5 5 C 1.34775 * 120.00285 * 275.00088 * 4 2 1
6 6 O 1.21283 * 119.99922 * 0.02562 * 5 4 2
7 7 C 1.50702 * 120.00371 * 180.02562 * 5 4 2
8 8 H 1.09002 * 109.46605 * 300.00213 * 7 5 4
9 9 C 1.53000 * 109.47243 * 59.99776 * 7 5 4
10 10 C 1.50697 * 109.47214 * 180.02562 * 7 5 4
11 11 H 1.08003 * 120.00225 * 0.02562 * 10 7 5
12 12 C 1.37878 * 119.99828 * 179.97438 * 10 7 5
13 13 N 1.31512 * 120.00127 * 0.02562 * 12 10 7
14 14 Si 1.86804 * 119.99875 * 179.97438 * 12 10 7
15 15 H 1.48504 * 109.46985 * 0.02562 * 14 12 10
16 16 H 1.48499 * 109.47033 * 120.00323 * 14 12 10
17 17 H 1.48502 * 109.47118 * 240.00258 * 14 12 10
18 18 C 1.50689 * 109.47484 * 239.99920 * 2 1 3
19 19 C 1.34858 * 125.89060 * 274.95850 * 18 2 1
20 20 C 1.40900 * 107.41627 * 179.80426 * 19 18 2
21 21 C 1.34850 * 107.41621 * 0.37840 * 20 19 18
22 22 N 1.36341 * 125.89234 * 94.99757 * 18 2 1
23 23 H 0.97004 * 125.63352 * 359.94553 * 22 18 2
24 24 H 1.09000 * 109.46943 * 60.00044 * 1 2 3
25 25 H 1.09003 * 109.46829 * 180.02562 * 1 2 3
26 26 H 1.08998 * 109.47391 * 300.00365 * 1 2 3
27 27 H 0.96996 * 119.99780 * 95.00518 * 4 2 1
28 28 H 1.08998 * 109.47077 * 300.00511 * 9 7 5
29 29 H 1.09001 * 109.46770 * 59.99895 * 9 7 5
30 30 H 1.08996 * 109.47030 * 179.97438 * 9 7 5
31 31 H 0.96997 * 120.00112 * 179.97438 * 13 12 10
32 32 H 1.07991 * 126.29023 * 0.02562 * 19 18 2
33 33 H 1.07999 * 126.29093 * 180.24309 * 20 19 18
34 34 H 1.08002 * 125.89234 * 179.89015 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6906 1.1962
5 6 2.1470 -0.0182 2.3572
6 8 1.8581 1.1584 2.4117
7 6 2.6498 -0.7284 3.5876
8 1 1.9775 -1.5507 3.8326
9 6 4.0525 -1.2784 3.3216
10 6 2.6997 0.2398 4.7413
11 1 2.3972 1.2666 4.5981
12 6 3.1306 -0.1856 5.9800
13 7 3.4986 -1.4360 6.1546
14 14 3.1932 1.0148 7.4100
15 1 2.7310 2.3508 6.9554
16 1 2.3101 0.5309 8.5014
17 1 4.5878 1.1167 7.9101
18 6 2.0324 -0.7104 -1.2303
19 6 2.2069 -2.0414 -1.3589
20 6 2.6845 -2.2802 -2.6628
21 6 2.7916 -1.0852 -3.2785
22 7 2.3896 -0.1182 -2.4054
23 1 2.3620 0.8337 -2.5898
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5139 0.8899
27 1 2.2490 -1.6317 1.1527
28 1 4.0159 -1.9788 2.4872
29 1 4.7247 -0.4561 3.0765
30 1 4.4163 -1.7917 4.2116
31 1 3.8021 -1.7352 7.0259
32 1 2.0126 -2.7875 -0.6027
33 1 2.9233 -3.2430 -3.0898
34 1 3.1325 -0.9226 -4.2903
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000831361400.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:28
Heat of formation + Delta-G solvation = -23.827748 kcal
Electronic energy + Delta-G solvation = -16544.113273 eV
Core-core repulsion = 13862.481723 eV
Total energy + Delta-G solvation = -2681.631550 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.11250 -40.49777 -36.47609 -35.73115 -32.99785 -31.85292 -31.15790 -28.89475
-27.19313 -25.16682 -23.53917 -21.71720 -21.27516 -20.43028 -19.06036 -18.25946
-17.28962 -16.86941 -16.24944 -15.88367 -15.26671 -14.93137 -14.70519 -14.41855
-14.35246 -13.73324 -13.50589 -13.40844 -13.10983 -12.96860 -12.89364 -12.65262
-12.58076 -12.20762 -12.06096 -11.99987 -11.02189 -10.60955 -10.32238 -10.06517
-9.74475 -8.95366 -8.13928 -6.24329 1.30338 1.40354 1.42222 1.55710
1.92751 2.10266 2.20023 2.45229 2.76990 3.15612 3.71889 4.09831
4.26810 4.40782 4.47647 4.61300 4.70522 4.74651 4.76947 4.92262
4.96776 5.03465 5.18792 5.37982 5.39191 5.50582 5.59558 5.75681
5.94542 6.09638 6.20123 6.22968 6.72466 6.78446 6.87284 7.40776
7.53796 8.92218
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.046638 B = 0.005481 C = 0.005166
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 600.230529 B = 5107.734603 C = 5418.546363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.212 3.788
3 H 0.069 0.931
4 N -0.716 5.716
5 C 0.525 3.475
6 O -0.585 6.585
7 C 0.024 3.976
8 H 0.042 0.958
9 C -0.119 4.119
10 C -0.527 4.527
11 H 0.049 0.951
12 C 0.019 3.981
13 N -0.911 5.911
14 Si 0.956 3.044
15 H -0.279 1.279
16 H -0.274 1.274
17 H -0.274 1.274
18 C -0.004 4.004
19 C -0.202 4.202
20 C -0.222 4.222
21 C -0.001 4.001
22 N -0.549 5.549
23 H 0.424 0.576
24 H 0.081 0.919
25 H 0.068 0.932
26 H 0.042 0.958
27 H 0.408 0.592
28 H 0.049 0.951
29 H 0.021 0.979
30 H 0.071 0.929
31 H 0.265 0.735
32 H 0.135 0.865
33 H 0.150 0.850
34 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.924 -1.941 -17.961 18.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.107 3.893
3 H 0.087 0.913
4 N -0.370 5.370
5 C 0.315 3.685
6 O -0.464 6.464
7 C 0.003 3.997
8 H 0.060 0.940
9 C -0.177 4.177
10 C -0.566 4.566
11 H 0.067 0.933
12 C -0.180 4.180
13 N -0.551 5.551
14 Si 0.782 3.218
15 H -0.204 1.204
16 H -0.200 1.200
17 H -0.200 1.200
18 C -0.117 4.117
19 C -0.227 4.227
20 C -0.246 4.246
21 C -0.133 4.133
22 N -0.145 5.145
23 H 0.262 0.738
24 H 0.100 0.900
25 H 0.087 0.913
26 H 0.061 0.939
27 H 0.245 0.755
28 H 0.068 0.932
29 H 0.040 0.960
30 H 0.090 0.910
31 H 0.074 0.926
32 H 0.153 0.847
33 H 0.167 0.833
34 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -2.069 -1.063 -17.823 17.974
hybrid contribution 0.146 0.511 0.926 1.068
sum -1.923 -0.551 -16.898 17.016
Atomic orbital electron populations
1.22075 0.93482 1.02934 1.02070 1.18992 0.94360 0.95118 0.80875
0.91255 1.46052 1.68067 1.14393 1.08457 1.21522 0.74966 0.86855
0.85181 1.90498 1.51811 1.18390 1.85729 1.18815 0.95563 0.95809
0.89535 0.93997 1.21551 0.96249 0.98765 1.01135 1.21312 1.44066
0.96657 0.94516 0.93260 1.25609 0.94723 0.96947 1.00754 1.69958
1.44834 1.16112 1.24186 0.85531 0.78009 0.79081 0.79176 1.20417
1.19955 1.19977 1.20060 1.09341 0.93416 0.88889 1.20869 1.08695
0.94104 0.99069 1.21185 1.09569 0.98742 0.95083 1.22408 1.05875
0.87476 0.97501 1.41944 1.51714 1.10113 1.10741 0.73761 0.90048
0.91298 0.93861 0.75488 0.93212 0.95975 0.90995 0.92612 0.84724
0.83267 0.78385
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.00 9.47 71.98 0.68 -3.32 16
2 C 0.21 6.38 3.08 44.24 0.14 6.51 16
3 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16
4 N -0.72 -25.36 4.95 -446.11 -2.21 -27.57 16
5 C 0.53 24.47 7.11 87.66 0.62 25.09 16
6 O -0.58 -31.22 15.12 -3.04 -0.05 -31.26 16
7 C 0.02 1.23 2.64 -12.29 -0.03 1.19 16
8 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16
9 C -0.12 -5.56 8.87 71.98 0.64 -4.92 16
10 C -0.53 -30.87 8.37 25.60 0.21 -30.65 16
11 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16
12 C 0.02 1.05 5.30 84.66 0.45 1.50 16
13 N -0.91 -51.62 11.32 21.45 0.24 -51.38 16
14 Si 0.96 45.26 29.54 68.60 2.03 47.29 16
15 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16
17 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
18 C 0.00 -0.09 6.22 41.08 0.26 0.16 16
19 C -0.20 -4.98 10.00 22.14 0.22 -4.76 16
20 C -0.22 -4.59 10.86 22.14 0.24 -4.35 16
21 C 0.00 -0.02 11.94 83.21 0.99 0.97 16
22 N -0.55 -10.59 6.07 -182.77 -1.11 -11.70 16
23 H 0.42 6.02 8.96 -92.71 -0.83 5.19 16
24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
27 H 0.41 12.80 6.75 -92.71 -0.63 12.18 16
28 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16
29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16
31 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16
32 H 0.13 3.19 7.42 -2.92 -0.02 3.16 16
33 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16
34 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16
Total: -1.00 -69.26 288.42 2.98 -66.28
By element:
Atomic # 1 Polarization: 21.25 SS G_CDS: -0.34 Total: 20.91 kcal
Atomic # 6 Polarization: -16.99 SS G_CDS: 4.42 Total: -12.57 kcal
Atomic # 7 Polarization: -87.57 SS G_CDS: -3.07 Total: -90.65 kcal
Atomic # 8 Polarization: -31.22 SS G_CDS: -0.05 Total: -31.26 kcal
Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal
Total: -69.26 2.98 -66.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000831361400.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal
(2) G-P(sol) polarization free energy of solvation -69.259 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds