Wall clock time and date at job start Mon Mar 30 2020 03:27:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47207 * 179.97438 * 2 1
4 4 H 1.09000 * 109.52438 * 288.73731 * 3 2 1
5 5 C 1.53041 * 109.49418 * 168.65473 * 3 2 1
6 6 C 1.53042 * 109.52331 * 178.67739 * 5 3 2
7 7 C 1.53187 * 109.31534 * 61.37197 * 6 5 3
8 8 N 1.46921 * 108.77759 * 305.36685 * 7 6 5
9 9 C 1.34775 * 120.63006 * 233.63121 * 8 7 6
10 10 O 1.21587 * 120.00266 * 354.95488 * 9 8 7
11 11 N 1.34785 * 120.00007 * 174.96354 * 9 8 7
12 12 C 1.46497 * 119.99846 * 185.07235 * 11 9 8
13 13 C 1.50701 * 109.46774 * 179.97438 * 12 11 9
14 14 H 1.07995 * 120.00363 * 359.97438 * 13 12 11
15 15 C 1.37880 * 119.99793 * 179.97438 * 13 12 11
16 16 N 1.31513 * 120.00374 * 0.02562 * 15 13 12
17 17 Si 1.86806 * 120.00020 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46811 * 59.99837 * 17 15 13
19 19 H 1.48499 * 109.46921 * 180.02562 * 17 15 13
20 20 H 1.48495 * 109.47058 * 300.00244 * 17 15 13
21 21 C 1.46927 * 118.73807 * 53.60494 * 8 7 6
22 22 H 4.18825 * 15.02536 * 359.97438 * 4 2 1
23 23 H 1.09000 * 109.46036 * 58.67016 * 5 3 2
24 24 H 1.08994 * 109.46083 * 298.68735 * 5 3 2
25 25 H 1.09003 * 109.49862 * 181.33092 * 6 5 3
26 26 H 1.09005 * 109.49544 * 301.41916 * 6 5 3
27 27 H 1.09000 * 109.58341 * 65.15486 * 7 6 5
28 28 H 1.08999 * 109.58645 * 185.57694 * 7 6 5
29 29 H 0.96994 * 119.99865 * 5.06384 * 11 9 8
30 30 H 1.09001 * 109.47322 * 299.99708 * 12 11 9
31 31 H 1.09001 * 109.47500 * 59.99500 * 12 11 9
32 32 H 0.96996 * 120.00582 * 180.02562 * 16 15 13
33 33 H 1.08999 * 109.58552 * 66.18028 * 21 8 7
34 34 H 1.09004 * 109.58529 * 186.46323 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 1 3.0105 -0.3292 0.9729
5 6 3.1561 1.4154 -0.2838
6 6 4.6862 1.4235 -0.2513
7 6 5.2211 0.4890 -1.3410
8 7 4.6208 -0.8398 -1.1609
9 6 5.3976 -1.9369 -1.0647
10 8 6.6003 -1.8457 -1.2183
11 7 4.8413 -3.1354 -0.7985
12 6 5.6939 -4.3072 -0.5839
13 6 4.8317 -5.5115 -0.3057
14 1 3.7563 -5.4137 -0.2899
15 6 5.4158 -6.7383 -0.0714
16 7 6.7254 -6.8574 -0.0901
17 14 4.3471 -8.2309 0.2741
18 1 3.4500 -8.4760 -0.8837
19 1 5.2114 -9.4188 0.4915
20 1 3.5305 -7.9844 1.4896
21 6 3.1575 -0.9498 -1.0871
22 1 -1.0500 0.0004 0.0005
23 1 2.7732 2.0984 0.4745
24 1 2.8121 1.7349 -1.2674
25 1 5.0485 2.4359 -0.4301
26 1 5.0312 1.0801 0.7240
27 1 4.9534 0.8810 -2.3222
28 1 6.3054 0.4144 -1.2584
29 1 3.8765 -3.2219 -0.7488
30 1 6.2943 -4.4879 -1.4755
31 1 6.3515 -4.1273 0.2666
32 1 7.1364 -7.7204 0.0744
33 1 2.7215 -0.6752 -2.0476
34 1 2.8801 -1.9745 -0.8395
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000847363110.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:25
Heat of formation + Delta-G solvation = 18.459703 kcal
Electronic energy + Delta-G solvation = -16451.713424 eV
Core-core repulsion = 13771.915596 eV
Total energy + Delta-G solvation = -2679.797828 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.95538 -37.52072 -34.35432 -33.79828 -32.73207 -31.77704 -30.22646 -27.25097
-25.06270 -23.80240 -22.55975 -20.92807 -19.12713 -18.42902 -17.75322 -16.01535
-15.81584 -15.13374 -14.80249 -14.66453 -14.39797 -14.10954 -13.52436 -13.19442
-13.05556 -12.53570 -11.94737 -11.80107 -11.75196 -11.29906 -11.10663 -10.96387
-10.85203 -10.77104 -10.40543 -10.26497 -10.14147 -9.37658 -9.32073 -8.70942
-8.40636 -7.71374 -6.13125 -4.19758 2.66587 2.74320 3.20233 3.27385
3.32269 3.34505 3.89339 4.17307 4.34264 4.61951 4.79814 4.84826
4.93265 5.10744 5.21350 5.22795 5.43178 5.56023 5.70194 5.77162
5.84314 5.91438 5.92085 6.08045 6.23373 6.76972 7.14692 7.51306
7.52932 7.55515 7.59726 7.87245 8.04188 8.77297 8.91444 9.33089
9.49312 10.97086
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026856 B = 0.006039 C = 0.005053
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.351867 B = 4635.463314 C = 5540.019682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.176 4.176
3 C 0.004 3.996
4 H 0.098 0.902
5 C -0.107 4.107
6 C -0.135 4.135
7 C 0.129 3.871
8 N -0.638 5.638
9 C 0.698 3.302
10 O -0.597 6.597
11 N -0.730 5.730
12 C 0.266 3.734
13 C -0.542 4.542
14 H 0.061 0.939
15 C 0.064 3.936
16 N -0.885 5.885
17 Si 0.904 3.096
18 H -0.275 1.275
19 H -0.285 1.285
20 H -0.276 1.276
21 C 0.124 3.876
22 H 0.217 0.783
23 H 0.067 0.933
24 H 0.067 0.933
25 H 0.076 0.924
26 H 0.069 0.931
27 H 0.060 0.940
28 H 0.094 0.906
29 H 0.385 0.615
30 H 0.026 0.974
31 H 0.024 0.976
32 H 0.266 0.734
33 H 0.068 0.932
34 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.429 15.390 -0.445 18.596
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.176 4.176
3 C -0.015 4.015
4 H 0.116 0.884
5 C -0.144 4.144
6 C -0.174 4.174
7 C 0.005 3.995
8 N -0.378 5.378
9 C 0.399 3.601
10 O -0.476 6.476
11 N -0.384 5.384
12 C 0.145 3.855
13 C -0.581 4.581
14 H 0.079 0.921
15 C -0.139 4.139
16 N -0.523 5.523
17 Si 0.731 3.269
18 H -0.201 1.201
19 H -0.211 1.211
20 H -0.201 1.201
21 C 0.000 4.000
22 H 0.234 0.766
23 H 0.085 0.915
24 H 0.086 0.914
25 H 0.095 0.905
26 H 0.088 0.912
27 H 0.078 0.922
28 H 0.113 0.887
29 H 0.220 0.780
30 H 0.044 0.956
31 H 0.042 0.958
32 H 0.076 0.924
33 H 0.086 0.914
34 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -9.315 15.241 -0.522 17.870
hybrid contribution -1.330 -0.922 0.288 1.644
sum -10.646 14.319 -0.234 17.844
Atomic orbital electron populations
1.24871 0.95839 1.00676 1.01019 1.22874 0.93979 1.00446 1.00324
1.18713 0.84448 0.97269 1.01111 0.88400 1.21510 0.95787 0.94783
1.02357 1.21969 0.95002 0.99964 1.00440 1.21371 0.99880 0.81004
0.97227 1.47286 1.05079 1.06486 1.78904 1.16050 0.85060 0.80642
0.78324 1.90859 1.12975 1.85108 1.58618 1.45908 1.10383 1.08065
1.74029 1.18989 0.89864 0.79676 0.96982 1.21182 0.93142 0.93171
1.50585 0.92091 1.24933 0.95097 0.98947 0.94952 1.69965 1.09021
1.25226 1.48066 0.86482 0.80025 0.81593 0.78838 1.20084 1.21052
1.20104 1.21479 0.80948 0.99749 0.97816 0.76629 0.91466 0.91401
0.90501 0.91180 0.92223 0.88723 0.77964 0.95617 0.95794 0.92410
0.91351 0.89642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -2.07 19.25 29.55 0.57 -1.50 16
2 C -0.18 -2.01 12.56 -37.12 -0.47 -2.47 16
3 C 0.00 0.04 2.72 -93.28 -0.25 -0.21 16
4 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16
5 C -0.11 -1.03 5.12 -26.69 -0.14 -1.17 16
6 C -0.14 -1.39 6.08 -26.61 -0.16 -1.55 16
7 C 0.13 1.70 6.42 -3.72 -0.02 1.68 16
8 N -0.64 -10.22 2.97 -178.50 -0.53 -10.75 16
9 C 0.70 14.96 8.30 -86.91 -0.72 14.24 16
10 O -0.60 -15.17 15.79 5.29 0.08 -15.08 16
11 N -0.73 -16.22 5.46 -66.41 -0.36 -16.58 16
12 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16
13 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16
14 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16
15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16
16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16
17 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16
18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
21 C 0.12 1.62 5.67 -3.71 -0.02 1.60 16
22 H 0.22 1.40 7.80 -54.09 -0.42 0.98 16
23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.09 1.44 7.03 -51.93 -0.37 1.07 16
29 H 0.39 7.49 5.78 -40.82 -0.24 7.25 16
30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16
31 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16
32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16
33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.09 1.16 5.56 -51.93 -0.29 0.87 16
LS Contribution 290.01 15.07 4.37 4.37
Total: -1.00 -32.85 290.01 -7.03 -39.88
By element:
Atomic # 1 Polarization: 8.14 SS G_CDS: -4.65 Total: 3.49 kcal
Atomic # 6 Polarization: 5.91 SS G_CDS: -1.66 Total: 4.25 kcal
Atomic # 7 Polarization: -52.79 SS G_CDS: -0.16 Total: -52.95 kcal
Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.08 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -32.85 -7.03 -39.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000847363110.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.344 kcal
(2) G-P(sol) polarization free energy of solvation -32.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.494 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.460 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds