Wall clock time and date at job start Mon Mar 30 2020 03:27:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47207 * 179.97438 * 2 1
4 4 H 1.09000 * 109.52438 * 288.73731 * 3 2 1
5 5 C 1.53041 * 109.49418 * 168.65473 * 3 2 1
6 6 C 1.53042 * 109.52331 * 178.67739 * 5 3 2
7 7 C 1.53187 * 109.31534 * 61.37197 * 6 5 3
8 8 N 1.46921 * 108.77759 * 305.36685 * 7 6 5
9 9 C 1.34775 * 120.63006 * 233.63121 * 8 7 6
10 10 O 1.21587 * 120.00266 * 354.95488 * 9 8 7
11 11 N 1.34785 * 120.00007 * 174.96354 * 9 8 7
12 12 C 1.46497 * 119.99846 * 185.07235 * 11 9 8
13 13 C 1.50701 * 109.46774 * 179.97438 * 12 11 9
14 14 H 1.07995 * 120.00363 * 359.97438 * 13 12 11
15 15 C 1.37880 * 119.99793 * 179.97438 * 13 12 11
16 16 N 1.31513 * 120.00374 * 0.02562 * 15 13 12
17 17 Si 1.86806 * 120.00020 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46811 * 59.99837 * 17 15 13
19 19 H 1.48499 * 109.46921 * 180.02562 * 17 15 13
20 20 H 1.48495 * 109.47058 * 300.00244 * 17 15 13
21 21 C 1.46927 * 118.73807 * 53.60494 * 8 7 6
22 22 H 4.18825 * 15.02536 * 359.97438 * 4 2 1
23 23 H 1.09000 * 109.46036 * 58.67016 * 5 3 2
24 24 H 1.08994 * 109.46083 * 298.68735 * 5 3 2
25 25 H 1.09003 * 109.49862 * 181.33092 * 6 5 3
26 26 H 1.09005 * 109.49544 * 301.41916 * 6 5 3
27 27 H 1.09000 * 109.58341 * 65.15486 * 7 6 5
28 28 H 1.08999 * 109.58645 * 185.57694 * 7 6 5
29 29 H 0.96994 * 119.99865 * 5.06384 * 11 9 8
30 30 H 1.09001 * 109.47322 * 299.99708 * 12 11 9
31 31 H 1.09001 * 109.47500 * 59.99500 * 12 11 9
32 32 H 0.96996 * 120.00582 * 180.02562 * 16 15 13
33 33 H 1.08999 * 109.58552 * 66.18028 * 21 8 7
34 34 H 1.09004 * 109.58529 * 186.46323 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 1 3.0105 -0.3292 0.9729
5 6 3.1561 1.4154 -0.2838
6 6 4.6862 1.4235 -0.2513
7 6 5.2211 0.4890 -1.3410
8 7 4.6208 -0.8398 -1.1609
9 6 5.3976 -1.9369 -1.0647
10 8 6.6003 -1.8457 -1.2183
11 7 4.8413 -3.1354 -0.7985
12 6 5.6939 -4.3072 -0.5839
13 6 4.8317 -5.5115 -0.3057
14 1 3.7563 -5.4137 -0.2899
15 6 5.4158 -6.7383 -0.0714
16 7 6.7254 -6.8574 -0.0901
17 14 4.3471 -8.2309 0.2741
18 1 3.4500 -8.4760 -0.8837
19 1 5.2114 -9.4188 0.4915
20 1 3.5305 -7.9844 1.4896
21 6 3.1575 -0.9498 -1.0871
22 1 -1.0500 0.0004 0.0005
23 1 2.7732 2.0984 0.4745
24 1 2.8121 1.7349 -1.2674
25 1 5.0485 2.4359 -0.4301
26 1 5.0312 1.0801 0.7240
27 1 4.9534 0.8810 -2.3222
28 1 6.3054 0.4144 -1.2584
29 1 3.8765 -3.2219 -0.7488
30 1 6.2943 -4.4879 -1.4755
31 1 6.3515 -4.1273 0.2666
32 1 7.1364 -7.7204 0.0744
33 1 2.7215 -0.6752 -2.0476
34 1 2.8801 -1.9745 -0.8395
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000847363110.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:25
Heat of formation + Delta-G solvation = -3.502000 kcal
Electronic energy + Delta-G solvation = -16452.665755 eV
Core-core repulsion = 13771.915596 eV
Total energy + Delta-G solvation = -2680.750159 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.41539 -38.85847 -36.25890 -34.97181 -34.51017 -33.13974 -31.18573 -29.25876
-26.38391 -24.94211 -24.34636 -22.17664 -20.75260 -19.61949 -18.85447 -18.02718
-17.37043 -16.60972 -16.52017 -15.74195 -15.51682 -15.33028 -14.92193 -14.79576
-14.43790 -14.06237 -13.70859 -13.50923 -12.94042 -12.69861 -12.68272 -12.32029
-12.18110 -11.98982 -11.73478 -11.50084 -11.40909 -11.09908 -10.89481 -10.79880
-10.05850 -9.41372 -8.28543 -6.45539 1.42638 1.47460 1.55262 1.66181
1.94873 1.96899 2.18542 2.38498 3.06006 3.07738 3.48284 3.80616
3.88960 4.02899 4.15688 4.26098 4.46484 4.58504 4.75303 4.83234
4.94373 5.03556 5.06364 5.14722 5.19842 5.26034 5.38044 5.46313
5.55505 5.72215 5.83882 6.07769 6.65169 6.73525 7.13591 7.24499
7.65894 8.83637
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026856 B = 0.006039 C = 0.005053
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.351867 B = 4635.463314 C = 5540.019682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.215 4.215
3 C 0.009 3.991
4 H 0.084 0.916
5 C -0.100 4.100
6 C -0.126 4.126
7 C 0.121 3.879
8 N -0.627 5.627
9 C 0.693 3.307
10 O -0.644 6.644
11 N -0.726 5.726
12 C 0.285 3.715
13 C -0.558 4.558
14 H 0.081 0.919
15 C 0.006 3.994
16 N -0.930 5.930
17 Si 0.986 3.014
18 H -0.262 1.262
19 H -0.283 1.283
20 H -0.262 1.262
21 C 0.121 3.879
22 H 0.248 0.752
23 H 0.082 0.918
24 H 0.081 0.919
25 H 0.107 0.893
26 H 0.055 0.945
27 H 0.085 0.915
28 H 0.069 0.931
29 H 0.401 0.599
30 H -0.014 1.014
31 H -0.014 1.014
32 H 0.270 0.730
33 H 0.089 0.911
34 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.613 16.214 -0.372 21.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.215 4.215
3 C -0.010 4.010
4 H 0.102 0.898
5 C -0.138 4.138
6 C -0.164 4.164
7 C -0.002 4.002
8 N -0.365 5.365
9 C 0.394 3.606
10 O -0.527 6.527
11 N -0.381 5.381
12 C 0.162 3.838
13 C -0.595 4.595
14 H 0.099 0.901
15 C -0.194 4.194
16 N -0.568 5.568
17 Si 0.808 3.192
18 H -0.187 1.187
19 H -0.209 1.209
20 H -0.187 1.187
21 C -0.002 4.002
22 H 0.264 0.736
23 H 0.101 0.899
24 H 0.099 0.901
25 H 0.125 0.875
26 H 0.074 0.926
27 H 0.103 0.897
28 H 0.087 0.913
29 H 0.238 0.762
30 H 0.004 0.996
31 H 0.004 0.996
32 H 0.078 0.922
33 H 0.107 0.893
34 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -12.570 16.136 -0.453 20.459
hybrid contribution -0.365 -1.076 0.238 1.161
sum -12.935 15.059 -0.214 19.853
Atomic orbital electron populations
1.25693 0.96655 0.98858 0.99011 1.22954 0.94276 1.02174 1.02142
1.18558 0.85091 0.97808 0.99513 0.89811 1.21497 0.94801 0.93841
1.03619 1.21917 0.95648 1.00470 0.98339 1.21663 0.98584 0.80042
0.99876 1.47298 1.06231 1.05844 1.77086 1.16236 0.84842 0.81485
0.77993 1.90818 1.15336 1.85972 1.60577 1.45531 1.10621 1.07404
1.74580 1.18423 0.89914 0.81905 0.93570 1.21539 0.94037 0.93314
1.50640 0.90138 1.26056 0.96494 1.02655 0.94187 1.70131 1.11391
1.26327 1.48940 0.85199 0.77960 0.76640 0.79355 1.18663 1.20870
1.18685 1.21698 0.78686 1.00096 0.99719 0.73587 0.89934 0.90072
0.87502 0.92600 0.89733 0.91270 0.76167 0.99604 0.99597 0.92162
0.89325 0.90518
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.08 19.25 74.32 1.43 -1.65 16
2 C -0.21 -4.36 12.56 31.13 0.39 -3.97 16
3 C 0.01 0.20 2.72 -12.52 -0.03 0.17 16
4 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
5 C -0.10 -1.65 5.12 30.62 0.16 -1.50 16
6 C -0.13 -2.33 6.08 30.67 0.19 -2.14 16
7 C 0.12 3.10 6.42 86.36 0.55 3.65 16
8 N -0.63 -20.01 2.97 -836.92 -2.49 -22.50 16
9 C 0.69 30.82 8.30 179.05 1.49 32.30 16
10 O -0.64 -34.61 15.79 -3.99 -0.06 -34.67 16
11 N -0.73 -33.38 5.46 -482.29 -2.63 -36.01 16
12 C 0.29 16.37 5.43 85.63 0.47 16.84 16
13 C -0.56 -31.22 9.28 25.60 0.24 -30.99 16
14 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16
15 C 0.01 0.33 5.46 84.66 0.46 0.79 16
16 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16
17 Si 0.99 42.84 29.54 68.60 2.03 44.87 16
18 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16
19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16
21 C 0.12 3.00 5.67 86.36 0.49 3.49 16
22 H 0.25 2.12 7.80 -4.42 -0.03 2.09 16
23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
25 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16
26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16
27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
28 H 0.07 2.15 7.03 -2.39 -0.02 2.14 16
29 H 0.40 15.72 5.78 -92.71 -0.54 15.18 16
30 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16
31 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16
32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16
33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.08 2.02 5.56 -2.39 -0.01 2.01 16
Total: -1.00 -74.31 290.01 3.51 -70.80
By element:
Atomic # 1 Polarization: 16.56 SS G_CDS: 0.55 Total: 17.12 kcal
Atomic # 6 Polarization: 11.17 SS G_CDS: 5.83 Total: 17.00 kcal
Atomic # 7 Polarization: -110.28 SS G_CDS: -4.84 Total: -115.12 kcal
Atomic # 8 Polarization: -34.61 SS G_CDS: -0.06 Total: -34.67 kcal
Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal
Total: -74.31 3.51 -70.80 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000847363110.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.301 kcal
(2) G-P(sol) polarization free energy of solvation -74.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds