Wall clock time and date at job start Mon Mar 30 2020 03:39:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09003 * 109.47062 * 2 1
4 4 O 1.42893 * 109.47099 * 119.99955 * 2 1 3
5 5 C 1.50697 * 109.46725 * 240.00492 * 2 1 3
6 6 C 1.38885 * 120.34002 * 100.00188 * 5 2 1
7 7 C 1.38297 * 118.50825 * 179.72405 * 6 5 2
8 8 C 1.39135 * 119.09606 * 359.97438 * 7 6 5
9 9 N 1.39009 * 119.70484 * 180.02562 * 8 7 6
10 10 C 1.46497 * 119.99953 * 0.02562 * 9 8 7
11 11 C 1.52997 * 109.47154 * 179.97438 * 10 9 8
12 12 C 1.50693 * 109.47127 * 180.02562 * 11 10 9
13 13 H 1.07998 * 120.00418 * 0.02562 * 12 11 10
14 14 C 1.37877 * 120.00194 * 180.02562 * 12 11 10
15 15 N 1.31520 * 120.00001 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00384 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.47194 * 60.00051 * 16 14 12
18 18 H 1.48501 * 109.47465 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47140 * 300.00254 * 16 14 12
20 20 N 1.32397 * 120.59107 * 359.97438 * 8 7 6
21 21 C 1.31974 * 121.62151 * 0.03873 * 20 8 7
22 22 H 1.08999 * 109.46603 * 180.02562 * 1 2 3
23 23 H 1.09007 * 109.46793 * 299.99801 * 1 2 3
24 24 H 1.09001 * 109.47379 * 59.99598 * 1 2 3
25 25 H 0.96706 * 114.00195 * 60.00273 * 4 2 1
26 26 H 1.08001 * 120.74259 * 359.74117 * 6 5 2
27 27 H 1.07994 * 120.45118 * 179.97438 * 7 6 5
28 28 H 0.96997 * 119.99427 * 180.02562 * 9 8 7
29 29 H 1.08995 * 109.47489 * 300.00248 * 10 9 8
30 30 H 1.09000 * 109.46755 * 60.00149 * 10 9 8
31 31 H 1.08995 * 109.47320 * 300.00591 * 11 10 9
32 32 H 1.09003 * 109.46748 * 60.00057 * 11 10 9
33 33 H 0.96998 * 120.00358 * 179.97438 * 15 14 12
34 34 H 1.07996 * 119.57278 * 180.02562 * 21 20 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 2.0323 -0.7103 -1.2305
6 6 2.4624 0.0160 -2.3334
7 6 2.9212 -0.6744 -3.4404
8 6 2.9369 -2.0653 -3.4116
9 7 3.3960 -2.7721 -4.5171
10 6 3.8611 -2.0522 -5.7052
11 6 4.3094 -3.0576 -6.7678
12 6 4.7885 -2.3170 -7.9896
13 1 4.7750 -1.2373 -8.0066
14 6 5.2440 -3.0179 -9.0861
15 7 5.2600 -4.3329 -9.0658
16 14 5.8371 -2.1000 -10.6010
17 1 6.9799 -1.2257 -10.2342
18 1 6.2724 -3.0759 -11.6323
19 1 4.7312 -1.2688 -11.1407
20 7 2.5193 -2.7219 -2.3404
21 6 2.0761 -2.0893 -1.2703
22 1 -0.3632 -1.0277 0.0005
23 1 -0.3633 0.5138 0.8901
24 1 -0.3634 0.5139 -0.8899
25 1 1.7211 -1.5952 1.2329
26 1 2.4392 1.0958 -2.3266
27 1 3.2627 -0.1411 -4.3152
28 1 3.4084 -3.7418 -4.5017
29 1 3.0495 -1.4420 -6.1013
30 1 4.7000 -1.4104 -5.4359
31 1 5.1212 -3.6674 -6.3714
32 1 3.4708 -3.6997 -7.0371
33 1 5.5801 -4.8260 -9.8373
34 1 1.7439 -2.6580 -0.4144
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000865670675.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:21
Heat of formation + Delta-G solvation = -29.528091 kcal
Electronic energy + Delta-G solvation = -15767.050784 eV
Core-core repulsion = 13085.172049 eV
Total energy + Delta-G solvation = -2681.878735 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.23124 -37.65928 -35.67158 -33.21238 -32.56558 -31.10283 -29.99213 -27.95350
-25.02081 -23.70099 -23.09281 -21.44551 -20.57234 -17.71722 -17.12106 -16.66503
-16.07526 -14.98131 -14.90233 -14.59098 -14.52783 -14.14728 -13.67500 -13.51701
-13.02994 -12.78959 -12.59812 -12.28712 -12.02658 -11.38885 -11.21409 -11.11456
-10.70446 -10.60866 -10.35210 -9.71151 -9.70185 -9.45672 -9.38111 -9.20188
-8.48540 -7.29931 -6.13971 -4.18265 1.46545 1.58410 3.26607 3.31356
3.32836 3.61210 4.01924 4.32785 4.37135 4.62342 4.77542 4.97403
4.98111 5.08493 5.22779 5.34038 5.47854 5.54463 5.78831 5.87093
5.91933 6.07459 6.15589 6.22602 6.42542 6.59019 6.74671 7.28505
7.44119 7.51203 7.55163 7.83396 7.99406 8.20311 8.46478 8.87234
9.46797 10.97542
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.065702 B = 0.003860 C = 0.003726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 426.066780 B = 7252.083327 C = 7512.045170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.161 3.839
3 H 0.101 0.899
4 O -0.561 6.561
5 C -0.254 4.254
6 C -0.023 4.023
7 C -0.239 4.239
8 C 0.410 3.590
9 N -0.713 5.713
10 C 0.127 3.873
11 C 0.014 3.986
12 C -0.526 4.526
13 H 0.059 0.941
14 C 0.060 3.940
15 N -0.892 5.892
16 Si 0.898 3.102
17 H -0.275 1.275
18 H -0.286 1.286
19 H -0.275 1.275
20 N -0.551 5.551
21 C 0.159 3.841
22 H 0.058 0.942
23 H 0.062 0.938
24 H 0.066 0.934
25 H 0.373 0.627
26 H 0.128 0.872
27 H 0.134 0.866
28 H 0.403 0.597
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.024 0.976
32 H 0.024 0.976
33 H 0.264 0.736
34 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.010 7.498 15.310 18.836
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.101 3.899
3 H 0.119 0.881
4 O -0.367 6.367
5 C -0.260 4.260
6 C -0.049 4.049
7 C -0.264 4.264
8 C 0.172 3.828
9 N -0.341 5.341
10 C 0.004 3.996
11 C -0.024 4.024
12 C -0.564 4.564
13 H 0.077 0.923
14 C -0.142 4.142
15 N -0.530 5.530
16 Si 0.725 3.275
17 H -0.201 1.201
18 H -0.212 1.212
19 H -0.201 1.201
20 N -0.268 5.268
21 C 0.000 4.000
22 H 0.077 0.923
23 H 0.081 0.919
24 H 0.085 0.915
25 H 0.220 0.780
26 H 0.146 0.854
27 H 0.152 0.848
28 H 0.239 0.761
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.042 0.958
32 H 0.042 0.958
33 H 0.073 0.927
34 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -7.573 7.116 15.056 18.294
hybrid contribution 0.060 0.389 -1.131 1.197
sum -7.513 7.505 13.926 17.513
Atomic orbital electron populations
1.22508 0.96014 1.02691 1.02522 1.20502 0.92408 0.95550 0.81393
0.88130 1.86599 1.77455 1.29056 1.43579 1.21002 1.10737 0.95622
0.98648 1.21058 0.92707 0.99598 0.91529 1.21448 1.10215 0.93404
1.01365 1.18593 0.88625 0.88675 0.86866 1.45164 1.66630 1.09344
1.12947 1.21820 0.97394 0.96651 0.83754 1.19286 0.97052 0.94105
0.91948 1.20966 1.43386 0.93105 0.98972 0.92321 1.25006 0.95519
0.94882 0.98834 1.69948 1.46501 1.05829 1.30748 0.86560 0.79247
0.79445 0.82202 1.20091 1.21183 1.20094 1.67210 1.18317 1.40558
1.00756 1.21913 0.92845 0.90896 0.94364 0.92251 0.91860 0.91479
0.77957 0.85400 0.84801 0.76134 0.92843 0.92836 0.95786 0.95796
0.92673 0.83892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.43 9.52 37.16 0.35 -1.07 16
2 C 0.16 1.55 3.84 -27.88 -0.11 1.44 16
3 H 0.10 0.91 8.03 -51.93 -0.42 0.50 16
4 O -0.56 -5.69 13.19 -35.23 -0.46 -6.15 16
5 C -0.25 -3.05 4.99 -104.46 -0.52 -3.58 16
6 C -0.02 -0.29 9.81 -39.32 -0.39 -0.68 16
7 C -0.24 -3.63 9.33 -39.23 -0.37 -4.00 16
8 C 0.41 7.05 7.65 -155.02 -1.19 5.86 16
9 N -0.71 -13.04 5.73 -60.43 -0.35 -13.38 16
10 C 0.13 2.52 4.83 -4.04 -0.02 2.50 16
11 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16
12 C -0.53 -14.20 9.11 -34.44 -0.31 -14.52 16
13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16
14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
15 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16
16 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
20 N -0.55 -9.06 10.39 -12.44 -0.13 -9.19 16
21 C 0.16 2.09 10.48 -17.57 -0.18 1.91 16
22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
23 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16
24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
25 H 0.37 2.55 7.51 45.56 0.34 2.89 16
26 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16
27 H 0.13 1.97 6.71 -52.49 -0.35 1.61 16
28 H 0.40 7.34 8.60 -40.82 -0.35 6.99 16
29 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16
30 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16
31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
34 H 0.14 1.39 6.78 -52.49 -0.36 1.04 16
LS Contribution 291.86 15.07 4.40 4.40
Total: -1.00 -30.54 291.86 -7.83 -38.37
By element:
Atomic # 1 Polarization: 9.70 SS G_CDS: -4.03 Total: 5.67 kcal
Atomic # 6 Polarization: -7.42 SS G_CDS: -2.97 Total: -10.38 kcal
Atomic # 7 Polarization: -48.11 SS G_CDS: 0.26 Total: -47.84 kcal
Atomic # 8 Polarization: -5.69 SS G_CDS: -0.46 Total: -6.15 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -30.54 -7.83 -38.37 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000865670675.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.845 kcal
(2) G-P(sol) polarization free energy of solvation -30.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.699 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.528 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds