Wall clock time and date at job start Mon Mar 30 2020 03:38:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.43195 * 179.97438 * 2 1
4 4 O 1.21620 * 119.99831 * 17.68364 * 3 2 1
5 5 N 1.34773 * 120.00224 * 197.68669 * 3 2 1
6 6 C 1.46966 * 120.59153 * 0.02562 * 5 3 2
7 7 C 1.52934 * 108.68894 * 235.07911 * 6 5 3
8 8 H 1.08993 * 109.45954 * 70.59457 * 7 6 5
9 9 C 1.53002 * 109.52265 * 190.95532 * 7 6 5
10 10 N 1.46963 * 108.87302 * 310.79280 * 7 6 5
11 11 C 1.36945 * 120.59279 * 235.21293 * 10 7 6
12 12 H 1.07991 * 120.00030 * 126.76834 * 11 10 7
13 13 C 1.38814 * 119.99694 * 306.76430 * 11 10 7
14 14 N 1.31623 * 120.00171 * 337.61928 * 13 11 10
15 15 Si 1.86794 * 119.99851 * 157.61483 * 13 11 10
16 16 H 1.48495 * 109.47417 * 180.02562 * 15 13 11
17 17 H 1.48506 * 109.47426 * 300.00076 * 15 13 11
18 18 H 1.48505 * 109.47140 * 59.99891 * 15 13 11
19 19 C 1.46966 * 118.81315 * 54.93396 * 10 7 6
20 20 H 1.09004 * 109.60741 * 64.77298 * 19 10 7
21 21 C 1.52996 * 109.60939 * 185.10890 * 19 10 7
22 22 C 1.46963 * 120.59645 * 180.02562 * 5 3 2
23 23 H 4.39218 * 13.43335 * 359.97438 * 4 2 1
24 24 H 1.08999 * 109.61045 * 354.95119 * 6 5 3
25 25 H 1.09002 * 109.60391 * 115.29498 * 6 5 3
26 26 H 1.09002 * 109.47370 * 187.81599 * 9 7 6
27 27 H 1.09004 * 109.47173 * 307.81934 * 9 7 6
28 28 H 1.09001 * 109.47199 * 67.81350 * 9 7 6
29 29 H 0.96999 * 119.99831 * 175.07511 * 14 13 11
30 30 H 1.08999 * 109.47094 * 60.00107 * 21 19 10
31 31 H 1.08999 * 109.47205 * 180.02562 * 21 19 10
32 32 H 1.09001 * 109.47547 * 300.00501 * 21 19 10
33 33 H 1.09000 * 109.60778 * 5.05384 * 22 5 3
34 34 H 1.09000 * 109.75237 * 244.62175 * 22 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6059 0.0006 0.0000
4 8 3.2144 -1.0026 -0.3199
5 7 3.2793 1.1129 0.3546
6 6 2.5572 2.3322 0.7441
7 6 3.0381 3.4882 -0.1341
8 1 2.6732 3.3475 -1.1515
9 6 2.5096 4.8102 0.4263
10 7 4.5076 3.5051 -0.1350
11 6 5.1918 4.6351 0.2261
12 1 5.9496 4.5852 0.9939
13 6 4.9113 5.8445 -0.3947
14 7 4.3474 5.8586 -1.5839
15 14 5.3340 7.4520 0.4576
16 1 4.9359 8.5910 -0.4081
17 1 4.6054 7.5342 1.7490
18 1 6.7964 7.5089 0.7099
19 6 5.2297 2.2859 -0.5246
20 1 5.0245 2.0575 -1.5705
21 6 6.7328 2.4950 -0.3301
22 6 4.7489 1.1283 0.3587
23 1 -1.0500 -0.0011 0.0001
24 1 1.4866 2.1843 0.6026
25 1 2.7601 2.5588 1.7908
26 1 2.7338 5.6165 -0.2721
27 1 1.4309 4.7402 0.5663
28 1 2.9877 5.0158 1.3841
29 1 4.0862 6.7014 -1.9869
30 1 6.9361 2.7173 0.7175
31 1 7.2661 1.5897 -0.6200
32 1 7.0670 3.3273 -0.9495
33 1 5.1256 0.1853 -0.0374
34 1 5.1130 1.2692 1.3764
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000911708843.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:42
Heat of formation + Delta-G solvation = 55.907196 kcal
Electronic energy + Delta-G solvation = -17418.893164 eV
Core-core repulsion = 14740.719181 eV
Total energy + Delta-G solvation = -2678.173983 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.70309 -37.35636 -34.25892 -33.41855 -32.56851 -31.26853 -27.88017 -26.56433
-25.77491 -24.20200 -22.08905 -20.42897 -19.49083 -18.04276 -16.62434 -15.99444
-15.79634 -14.96790 -14.78520 -14.47498 -13.84381 -13.64779 -13.07429 -12.67356
-12.17194 -11.63287 -11.58833 -11.45470 -11.04404 -10.96204 -10.77229 -10.65163
-10.56425 -10.49937 -10.39276 -10.12018 -9.97832 -9.89875 -9.64060 -8.44498
-8.03802 -6.48896 -5.80639 -3.62917 1.83376 2.53493 3.28840 3.35704
3.36552 3.39365 3.83776 4.35920 4.44030 5.08422 5.22840 5.57384
5.68793 5.69422 5.94366 6.02132 6.10187 6.14258 6.30363 6.39145
6.51354 6.54799 6.66413 6.78147 6.88821 7.06851 7.21969 7.32021
7.33178 7.56532 7.74900 7.80328 8.38424 8.52511 9.09651 9.63543
10.40651 11.08086
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033347 B = 0.008474 C = 0.007233
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.454409 B = 3303.475186 C = 3870.242931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.208 4.208
3 C 0.616 3.384
4 O -0.544 6.544
5 N -0.583 5.583
6 C 0.087 3.913
7 C 0.182 3.818
8 H 0.032 0.968
9 C -0.144 4.144
10 N -0.576 5.576
11 C -0.267 4.267
12 H 0.055 0.945
13 C 0.039 3.961
14 N -0.870 5.870
15 Si 0.881 3.119
16 H -0.290 1.290
17 H -0.278 1.278
18 H -0.278 1.278
19 C 0.155 3.845
20 H 0.031 0.969
21 C -0.126 4.126
22 C 0.100 3.900
23 H 0.231 0.769
24 H 0.071 0.929
25 H 0.068 0.932
26 H 0.090 0.910
27 H 0.024 0.976
28 H 0.055 0.945
29 H 0.255 0.745
30 H 0.053 0.947
31 H 0.038 0.962
32 H 0.068 0.932
33 H 0.083 0.917
34 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.117 -4.996 4.187 8.287
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.211 4.211
3 C 0.404 3.596
4 O -0.424 6.424
5 N -0.312 5.312
6 C -0.037 4.037
7 C 0.075 3.925
8 H 0.050 0.950
9 C -0.202 4.202
10 N -0.300 5.300
11 C -0.397 4.397
12 H 0.072 0.928
13 C -0.164 4.164
14 N -0.509 5.509
15 Si 0.709 3.291
16 H -0.215 1.215
17 H -0.204 1.204
18 H -0.204 1.204
19 C 0.048 3.952
20 H 0.048 0.952
21 C -0.184 4.184
22 C -0.024 4.024
23 H 0.247 0.753
24 H 0.089 0.911
25 H 0.086 0.914
26 H 0.109 0.891
27 H 0.043 0.957
28 H 0.074 0.926
29 H 0.066 0.934
30 H 0.072 0.928
31 H 0.057 0.943
32 H 0.087 0.913
33 H 0.102 0.898
34 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -4.721 -5.347 3.857 8.109
hybrid contribution -0.244 0.985 0.362 1.077
sum -4.966 -4.362 4.219 7.841
Atomic orbital electron populations
1.25146 0.95783 0.98100 0.94636 1.21672 0.93643 1.01828 1.03944
1.14983 0.82890 0.83489 0.78228 1.90795 1.68767 1.33057 1.49751
1.47925 1.07865 1.11266 1.64190 1.22648 0.95253 0.85370 1.00421
1.20514 0.85363 0.91656 0.94991 0.95002 1.22011 0.96114 0.99218
1.02848 1.43964 0.99267 1.08600 1.78187 1.18632 1.20332 0.85804
1.14906 0.92781 1.25501 0.98168 0.99059 0.93659 1.70214 1.42423
1.26058 1.12193 0.86758 0.78900 0.83782 0.79667 1.21531 1.20405
1.20361 1.20886 0.92466 0.87038 0.94775 0.95159 1.21639 0.94442
1.00279 1.02084 1.22408 0.77533 1.01112 1.01308 0.75272 0.91060
0.91374 0.89120 0.95704 0.92628 0.93447 0.92826 0.94297 0.91290
0.89816 0.91517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.40 19.19 29.55 0.57 -0.84 16
2 C -0.21 -3.36 11.57 -38.84 -0.45 -3.81 16
3 C 0.62 11.87 7.55 -14.34 -0.11 11.76 16
4 O -0.54 -11.84 16.49 5.26 0.09 -11.75 16
5 N -0.58 -11.10 2.95 -175.65 -0.52 -11.61 16
6 C 0.09 1.59 5.77 -3.82 -0.02 1.57 16
7 C 0.18 3.94 3.25 -67.71 -0.22 3.72 16
8 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
9 C -0.14 -3.03 7.81 37.16 0.29 -2.74 16
10 N -0.58 -13.47 2.76 -157.30 -0.43 -13.90 16
11 C -0.27 -6.69 6.63 -15.06 -0.10 -6.79 16
12 H 0.05 1.37 7.17 -52.49 -0.38 1.00 16
13 C 0.04 0.99 3.19 -17.43 -0.06 0.94 16
14 N -0.87 -23.54 11.80 55.49 0.65 -22.89 16
15 Si 0.88 19.98 29.61 -169.99 -5.03 14.94 16
16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
19 C 0.16 3.28 3.65 -67.50 -0.25 3.04 16
20 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
21 C -0.13 -2.42 8.19 37.16 0.30 -2.12 16
22 C 0.10 1.89 5.91 -3.61 -0.02 1.87 16
23 H 0.23 1.53 7.80 -54.09 -0.42 1.11 16
24 H 0.07 1.15 6.30 -51.93 -0.33 0.83 16
25 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16
26 H 0.09 2.16 4.96 -51.93 -0.26 1.90 16
27 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16
28 H 0.05 1.19 7.53 -51.93 -0.39 0.80 16
29 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16
30 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16
31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16
33 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16
34 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16
LS Contribution 280.67 15.07 4.23 4.23
Total: -1.00 -29.39 280.67 -5.67 -35.06
By element:
Atomic # 1 Polarization: 3.91 SS G_CDS: -4.59 Total: -0.68 kcal
Atomic # 6 Polarization: 6.66 SS G_CDS: -0.06 Total: 6.60 kcal
Atomic # 7 Polarization: -48.11 SS G_CDS: -0.30 Total: -48.40 kcal
Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal
Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.94 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -29.39 -5.67 -35.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000911708843.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.968 kcal
(2) G-P(sol) polarization free energy of solvation -29.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds