Wall clock time and date at job start Mon Mar 30 2020 03:38:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.43195 * 179.97438 * 2 1
4 4 O 1.21620 * 119.99831 * 17.68364 * 3 2 1
5 5 N 1.34773 * 120.00224 * 197.68669 * 3 2 1
6 6 C 1.46966 * 120.59153 * 0.02562 * 5 3 2
7 7 C 1.52934 * 108.68894 * 235.07911 * 6 5 3
8 8 H 1.08993 * 109.45954 * 70.59457 * 7 6 5
9 9 C 1.53002 * 109.52265 * 190.95532 * 7 6 5
10 10 N 1.46963 * 108.87302 * 310.79280 * 7 6 5
11 11 C 1.36945 * 120.59279 * 235.21293 * 10 7 6
12 12 H 1.07991 * 120.00030 * 126.76834 * 11 10 7
13 13 C 1.38814 * 119.99694 * 306.76430 * 11 10 7
14 14 N 1.31623 * 120.00171 * 337.61928 * 13 11 10
15 15 Si 1.86794 * 119.99851 * 157.61483 * 13 11 10
16 16 H 1.48495 * 109.47417 * 180.02562 * 15 13 11
17 17 H 1.48506 * 109.47426 * 300.00076 * 15 13 11
18 18 H 1.48505 * 109.47140 * 59.99891 * 15 13 11
19 19 C 1.46966 * 118.81315 * 54.93396 * 10 7 6
20 20 H 1.09004 * 109.60741 * 64.77298 * 19 10 7
21 21 C 1.52996 * 109.60939 * 185.10890 * 19 10 7
22 22 C 1.46963 * 120.59645 * 180.02562 * 5 3 2
23 23 H 4.39218 * 13.43335 * 359.97438 * 4 2 1
24 24 H 1.08999 * 109.61045 * 354.95119 * 6 5 3
25 25 H 1.09002 * 109.60391 * 115.29498 * 6 5 3
26 26 H 1.09002 * 109.47370 * 187.81599 * 9 7 6
27 27 H 1.09004 * 109.47173 * 307.81934 * 9 7 6
28 28 H 1.09001 * 109.47199 * 67.81350 * 9 7 6
29 29 H 0.96999 * 119.99831 * 175.07511 * 14 13 11
30 30 H 1.08999 * 109.47094 * 60.00107 * 21 19 10
31 31 H 1.08999 * 109.47205 * 180.02562 * 21 19 10
32 32 H 1.09001 * 109.47547 * 300.00501 * 21 19 10
33 33 H 1.09000 * 109.60778 * 5.05384 * 22 5 3
34 34 H 1.09000 * 109.75237 * 244.62175 * 22 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6059 0.0006 0.0000
4 8 3.2144 -1.0026 -0.3199
5 7 3.2793 1.1129 0.3546
6 6 2.5572 2.3322 0.7441
7 6 3.0381 3.4882 -0.1341
8 1 2.6732 3.3475 -1.1515
9 6 2.5096 4.8102 0.4263
10 7 4.5076 3.5051 -0.1350
11 6 5.1918 4.6351 0.2261
12 1 5.9496 4.5852 0.9939
13 6 4.9113 5.8445 -0.3947
14 7 4.3474 5.8586 -1.5839
15 14 5.3340 7.4520 0.4576
16 1 4.9359 8.5910 -0.4081
17 1 4.6054 7.5342 1.7490
18 1 6.7964 7.5089 0.7099
19 6 5.2297 2.2859 -0.5246
20 1 5.0245 2.0575 -1.5705
21 6 6.7328 2.4950 -0.3301
22 6 4.7489 1.1283 0.3587
23 1 -1.0500 -0.0011 0.0001
24 1 1.4866 2.1843 0.6026
25 1 2.7601 2.5588 1.7908
26 1 2.7338 5.6165 -0.2721
27 1 1.4309 4.7402 0.5663
28 1 2.9877 5.0158 1.3841
29 1 4.0862 6.7014 -1.9869
30 1 6.9361 2.7173 0.7175
31 1 7.2661 1.5897 -0.6200
32 1 7.0670 3.3273 -0.9495
33 1 5.1256 0.1853 -0.0374
34 1 5.1130 1.2692 1.3764
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000911708843.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:42
Heat of formation + Delta-G solvation = 37.255691 kcal
Electronic energy + Delta-G solvation = -17419.701954 eV
Core-core repulsion = 14740.719181 eV
Total energy + Delta-G solvation = -2678.982773 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.20556 -39.00369 -35.91261 -34.93370 -33.84463 -33.10359 -29.63501 -28.07945
-27.40727 -25.92417 -23.52489 -22.10408 -21.20446 -19.46713 -18.10966 -17.70573
-17.10355 -16.75494 -16.37252 -16.19994 -15.48765 -15.21917 -14.86135 -14.20785
-13.76430 -13.39113 -13.25258 -13.05554 -12.69089 -12.58635 -12.35186 -12.26639
-12.15347 -11.93128 -11.89146 -11.78106 -11.68009 -11.54630 -11.21552 -10.21551
-9.76013 -8.41558 -7.71084 -5.60425 0.60758 1.41593 1.48274 1.51954
1.56795 2.07083 2.50845 2.58250 3.21024 3.28119 3.48355 4.07492
4.18045 4.27989 4.45764 4.48087 4.53867 4.70415 4.76400 4.82199
4.89218 4.95321 4.97747 5.18080 5.34549 5.36967 5.58741 5.60601
5.75060 5.87473 6.30140 6.30701 6.56732 6.93873 7.21584 7.75696
8.50398 9.12820
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033347 B = 0.008474 C = 0.007233
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.454409 B = 3303.475186 C = 3870.242931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.033 4.033
2 C -0.297 4.297
3 C 0.614 3.386
4 O -0.582 6.582
5 N -0.590 5.590
6 C 0.102 3.898
7 C 0.179 3.821
8 H -0.002 1.002
9 C -0.135 4.135
10 N -0.590 5.590
11 C -0.267 4.267
12 H 0.052 0.948
13 C 0.003 3.997
14 N -0.905 5.905
15 Si 0.936 3.064
16 H -0.296 1.296
17 H -0.269 1.269
18 H -0.277 1.277
19 C 0.150 3.850
20 H -0.001 1.001
21 C -0.116 4.116
22 C 0.109 3.891
23 H 0.287 0.713
24 H 0.097 0.903
25 H 0.078 0.922
26 H 0.062 0.938
27 H 0.058 0.942
28 H 0.050 0.950
29 H 0.251 0.749
30 H 0.059 0.941
31 H 0.067 0.933
32 H 0.042 0.958
33 H 0.084 0.916
34 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.937 -5.377 5.734 10.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 C -0.299 4.299
3 C 0.405 3.595
4 O -0.465 6.465
5 N -0.319 5.319
6 C -0.022 4.022
7 C 0.072 3.928
8 H 0.016 0.984
9 C -0.194 4.194
10 N -0.315 5.315
11 C -0.396 4.396
12 H 0.070 0.930
13 C -0.197 4.197
14 N -0.546 5.546
15 Si 0.763 3.237
16 H -0.222 1.222
17 H -0.194 1.194
18 H -0.202 1.202
19 C 0.044 3.956
20 H 0.016 0.984
21 C -0.174 4.174
22 C -0.014 4.014
23 H 0.302 0.698
24 H 0.115 0.885
25 H 0.097 0.903
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.069 0.931
29 H 0.061 0.939
30 H 0.078 0.922
31 H 0.086 0.914
32 H 0.061 0.939
33 H 0.102 0.898
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -6.545 -5.729 5.428 10.253
hybrid contribution 0.231 1.050 -0.171 1.089
sum -6.314 -4.678 5.257 9.455
Atomic orbital electron populations
1.26337 0.96256 0.93178 0.89365 1.21457 0.93524 1.06432 1.08512
1.15384 0.84558 0.82708 0.76874 1.90749 1.70138 1.34241 1.51389
1.48009 1.07819 1.11725 1.64363 1.22457 0.96467 0.83476 0.99764
1.20500 0.84523 0.93637 0.94102 0.98395 1.21871 0.98244 0.97782
1.01459 1.44235 1.00209 1.08809 1.78230 1.18784 1.20147 0.86453
1.14265 0.93033 1.26034 0.98370 1.01428 0.93885 1.70321 1.44321
1.26297 1.13649 0.85886 0.78589 0.80387 0.78827 1.22242 1.19435
1.20236 1.20964 0.93730 0.87352 0.93586 0.98353 1.21525 0.93317
1.00656 1.01852 1.22204 0.78180 0.99794 1.01246 0.69758 0.88511
0.90345 0.91958 0.92334 0.93061 0.93927 0.92239 0.91372 0.93933
0.89783 0.90252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.03 -0.63 19.19 74.32 1.43 0.80 16
2 C -0.30 -8.89 11.57 30.01 0.35 -8.54 16
3 C 0.61 23.50 7.55 85.49 0.65 24.14 16
4 O -0.58 -25.72 16.49 -4.09 -0.07 -25.78 16
5 N -0.59 -22.22 2.95 -827.88 -2.44 -24.66 16
6 C 0.10 3.57 5.77 86.27 0.50 4.07 16
7 C 0.18 7.75 3.25 44.88 0.15 7.90 16
8 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16
9 C -0.14 -5.58 7.81 71.98 0.56 -5.02 16
10 N -0.59 -27.93 2.76 -651.57 -1.80 -29.73 16
11 C -0.27 -13.43 6.63 84.03 0.56 -12.87 16
12 H 0.05 2.61 7.17 -2.91 -0.02 2.59 16
13 C 0.00 0.14 3.19 84.86 0.27 0.41 16
14 N -0.90 -50.19 11.80 21.65 0.26 -49.93 16
15 Si 0.94 41.18 29.61 68.60 2.03 43.21 16
16 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16
17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
19 C 0.15 6.49 3.65 45.02 0.16 6.65 16
20 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16
21 C -0.12 -4.44 8.19 71.98 0.59 -3.85 16
22 C 0.11 4.13 5.91 86.41 0.51 4.65 16
23 H 0.29 1.63 7.80 -4.42 -0.03 1.60 16
24 H 0.10 2.87 6.30 -2.39 -0.02 2.86 16
25 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16
26 H 0.06 2.97 4.96 -2.39 -0.01 2.96 16
27 H 0.06 1.95 8.13 -2.39 -0.02 1.94 16
28 H 0.05 2.12 7.53 -2.39 -0.02 2.10 16
29 H 0.25 13.57 8.32 -92.71 -0.77 12.80 16
30 H 0.06 2.19 7.47 -2.39 -0.02 2.17 16
31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
32 H 0.04 1.83 7.71 -2.39 -0.02 1.81 16
33 H 0.08 3.16 6.99 -2.39 -0.02 3.15 16
34 H 0.08 2.79 8.12 -2.39 -0.02 2.77 16
Total: -1.00 -66.57 280.67 4.78 -61.79
By element:
Atomic # 1 Polarization: 5.70 SS G_CDS: 1.08 Total: 6.78 kcal
Atomic # 6 Polarization: 12.60 SS G_CDS: 5.72 Total: 18.32 kcal
Atomic # 7 Polarization: -100.34 SS G_CDS: -3.98 Total: -104.32 kcal
Atomic # 8 Polarization: -25.72 SS G_CDS: -0.07 Total: -25.78 kcal
Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal
Total: -66.57 4.78 -61.79 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000911708843.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.044 kcal
(2) G-P(sol) polarization free energy of solvation -66.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds