Wall clock time and date at job start Mon Mar 30 2020 03:09:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 C 1.53000 * 109.47010 * 115.90218 * 3 2 1
5 5 N 1.46504 * 112.84947 * 304.03966 * 4 3 2
6 6 C 1.34775 * 119.99567 * 293.93489 * 5 4 3
7 7 O 1.21591 * 120.00617 * 354.97014 * 6 5 4
8 8 N 1.34785 * 119.99728 * 174.96676 * 6 5 4
9 9 C 1.46498 * 119.99893 * 180.02562 * 8 6 5
10 10 C 1.50692 * 109.46973 * 179.97438 * 9 8 6
11 11 H 1.08003 * 120.00566 * 359.97438 * 10 9 8
12 12 C 1.37886 * 120.00346 * 179.97438 * 10 9 8
13 13 N 1.31513 * 119.99439 * 359.97438 * 12 10 9
14 14 Si 1.86794 * 120.00275 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47365 * 60.00126 * 14 12 10
16 16 H 1.48506 * 109.46957 * 179.97438 * 14 12 10
17 17 H 1.48506 * 109.47104 * 300.00025 * 14 12 10
18 18 C 1.53783 * 113.69136 * 75.30784 * 4 3 2
19 19 C 1.53780 * 87.08168 * 139.99236 * 18 4 3
20 20 C 1.53778 * 113.61620 * 172.84388 * 4 3 2
21 21 H 4.44641 * 5.63371 * 180.02562 * 4 1 2
22 22 H 1.08995 * 109.47531 * 355.89819 * 3 2 1
23 23 H 1.09001 * 109.46952 * 235.89481 * 3 2 1
24 24 H 0.96999 * 120.00039 * 113.93684 * 5 4 3
25 25 H 0.96994 * 119.99874 * 359.97438 * 8 6 5
26 26 H 1.09000 * 109.46753 * 299.99766 * 9 8 6
27 27 H 1.09001 * 109.47215 * 60.00051 * 9 8 6
28 28 H 0.97001 * 119.99839 * 179.97438 * 13 12 10
29 29 H 1.09008 * 113.61172 * 254.54075 * 18 4 3
30 30 H 1.08991 * 113.61615 * 25.44158 * 18 4 3
31 31 H 1.08996 * 113.61697 * 220.01335 * 19 18 4
32 32 H 1.09004 * 113.61218 * 89.11465 * 19 18 4
33 33 H 1.09005 * 113.61294 * 334.48383 * 20 4 3
34 34 H 1.08996 * 113.61862 * 105.38344 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1557 0.6310 -1.2976
5 7 2.6331 -0.0312 -2.4954
6 6 2.9842 -1.3033 -2.7694
7 8 3.8048 -1.8707 -2.0744
8 7 2.4256 -1.9464 -3.8139
9 6 2.8067 -3.3293 -4.1114
10 6 2.0436 -3.8122 -5.3177
11 1 1.3442 -3.1550 -5.8131
12 6 2.2382 -5.0932 -5.7893
13 7 3.0901 -5.8934 -5.1865
14 14 1.2917 -5.6920 -7.2842
15 1 1.6095 -4.8286 -8.4499
16 1 1.6791 -7.0934 -7.5867
17 1 -0.1656 -5.6300 -7.0050
18 6 3.0242 2.1628 -1.3337
19 6 4.4034 2.1865 -2.0135
20 6 4.6790 0.8398 -1.3242
21 1 -1.0500 0.0001 0.0002
22 1 3.0098 -1.0241 0.0735
23 1 3.0090 0.5771 0.8509
24 1 2.0345 0.4458 -3.0912
25 1 1.7707 -1.4939 -4.3680
26 1 3.8765 -3.3754 -4.3153
27 1 2.5722 -3.9629 -3.2560
28 1 3.2268 -6.7947 -5.5180
29 1 2.2158 2.5167 -1.9736
30 1 3.0162 2.6237 -0.3461
31 1 5.0474 2.9946 -1.6665
32 1 4.3557 2.1191 -3.1004
33 1 5.1235 0.9390 -0.3339
34 1 5.2066 0.1256 -1.9564
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000922229127.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:56
Heat of formation + Delta-G solvation = 36.605516 kcal
Electronic energy + Delta-G solvation = -16480.811275 eV
Core-core repulsion = 13801.800308 eV
Total energy + Delta-G solvation = -2679.010967 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.26985 -37.93320 -34.05795 -33.63540 -32.74326 -31.90485 -28.93300 -26.96783
-25.72585 -23.48270 -22.40054 -20.31862 -19.03483 -18.17560 -17.74541 -16.12059
-15.68861 -15.37445 -14.85333 -14.26710 -14.15026 -14.00042 -13.70522 -13.11355
-12.87396 -12.35006 -11.92316 -11.89627 -11.48920 -11.07379 -10.96227 -10.91174
-10.81873 -10.39440 -10.26955 -10.03485 -9.90519 -9.35285 -9.21199 -8.69577
-8.58878 -7.71068 -6.12500 -4.18848 2.98950 3.04860 3.27604 3.30325
3.32911 3.39304 3.99174 4.35150 4.37225 4.54557 4.74380 4.89404
4.96146 5.16227 5.23488 5.53698 5.64753 5.65245 5.69865 5.83088
6.04290 6.05864 6.19897 6.29822 6.37497 7.04387 7.17089 7.56412
7.59800 7.61455 7.81835 7.95344 8.08953 8.80283 9.00297 9.38690
9.53129 10.97759
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034285 B = 0.005426 C = 0.005146
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 816.486901 B = 5158.942029 C = 5439.542824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.164 4.164
3 C -0.019 4.019
4 C 0.183 3.817
5 N -0.735 5.735
6 C 0.697 3.303
7 O -0.597 6.597
8 N -0.730 5.730
9 C 0.269 3.731
10 C -0.542 4.542
11 H 0.061 0.939
12 C 0.064 3.936
13 N -0.886 5.886
14 Si 0.904 3.096
15 H -0.276 1.276
16 H -0.285 1.285
17 H -0.276 1.276
18 C -0.137 4.137
19 C -0.140 4.140
20 C -0.139 4.139
21 H 0.212 0.788
22 H 0.103 0.897
23 H 0.091 0.909
24 H 0.392 0.608
25 H 0.385 0.615
26 H 0.024 0.976
27 H 0.024 0.976
28 H 0.266 0.734
29 H 0.069 0.931
30 H 0.092 0.908
31 H 0.067 0.933
32 H 0.080 0.920
33 H 0.086 0.914
34 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.873 16.162 7.200 17.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C -0.164 4.164
3 C -0.056 4.056
4 C 0.095 3.905
5 N -0.391 5.391
6 C 0.397 3.603
7 O -0.476 6.476
8 N -0.382 5.382
9 C 0.148 3.852
10 C -0.580 4.580
11 H 0.079 0.921
12 C -0.140 4.140
13 N -0.523 5.523
14 Si 0.731 3.269
15 H -0.201 1.201
16 H -0.211 1.211
17 H -0.201 1.201
18 C -0.174 4.174
19 C -0.177 4.177
20 C -0.177 4.177
21 H 0.229 0.771
22 H 0.121 0.879
23 H 0.109 0.891
24 H 0.225 0.775
25 H 0.217 0.783
26 H 0.042 0.958
27 H 0.042 0.958
28 H 0.076 0.924
29 H 0.088 0.912
30 H 0.111 0.889
31 H 0.086 0.914
32 H 0.098 0.902
33 H 0.105 0.895
34 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -1.018 15.365 7.815 17.268
hybrid contribution -1.368 -0.070 -1.370 1.938
sum -2.387 15.295 6.445 16.768
Atomic orbital electron populations
1.24747 0.95813 1.02260 1.01644 1.22989 0.94318 0.99458 0.99631
1.19125 0.85099 1.04075 0.97350 1.20811 0.94341 0.91076 0.84274
1.44811 1.53843 1.13511 1.26960 1.16100 0.81687 0.80484 0.82042
1.90846 1.37149 1.67086 1.52477 1.45725 1.45213 1.17123 1.30167
1.18941 0.96016 0.74571 0.95702 1.21201 1.25081 0.98765 1.12996
0.92075 1.24940 0.95295 0.96388 0.97371 1.69971 1.34392 1.07710
1.40263 0.86479 0.80076 0.77848 0.82500 1.20117 1.21072 1.20117
1.23240 0.98160 0.94273 1.01767 1.22827 0.96638 0.97957 1.00280
1.23248 0.95648 0.97205 1.01610 0.77063 0.87938 0.89135 0.77476
0.78308 0.95804 0.95844 0.92439 0.91183 0.88942 0.91411 0.90159
0.89545 0.89780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -3.02 19.25 29.55 0.57 -2.45 16
2 C -0.16 -2.38 12.83 -37.12 -0.48 -2.85 16
3 C -0.02 -0.26 5.01 -29.52 -0.15 -0.41 16
4 C 0.18 2.43 0.54 -131.00 -0.07 2.36 16
5 N -0.73 -11.31 4.74 -51.65 -0.24 -11.56 16
6 C 0.70 14.45 8.12 -86.91 -0.71 13.74 16
7 O -0.60 -14.53 14.23 5.29 0.08 -14.45 16
8 N -0.73 -15.98 5.55 -66.42 -0.37 -16.35 16
9 C 0.27 7.31 5.43 -5.20 -0.03 7.29 16
10 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16
11 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16
12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16
13 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16
14 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16
15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
18 C -0.14 -1.35 7.24 -25.92 -0.19 -1.54 16
19 C -0.14 -1.44 7.99 -25.92 -0.21 -1.64 16
20 C -0.14 -1.78 6.95 -25.92 -0.18 -1.96 16
21 H 0.21 2.09 7.80 -54.09 -0.42 1.66 16
22 H 0.10 1.72 7.16 -51.93 -0.37 1.35 16
23 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16
24 H 0.39 5.08 8.68 -40.82 -0.35 4.73 16
25 H 0.39 7.30 8.34 -40.82 -0.34 6.96 16
26 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16
27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
29 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16
30 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16
31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16
34 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16
LS Contribution 296.77 15.07 4.47 4.47
Total: -1.00 -32.79 296.77 -6.97 -39.76
By element:
Atomic # 1 Polarization: 13.60 SS G_CDS: -4.77 Total: 8.84 kcal
Atomic # 6 Polarization: 0.77 SS G_CDS: -1.85 Total: -1.08 kcal
Atomic # 7 Polarization: -53.75 SS G_CDS: 0.12 Total: -53.63 kcal
Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -32.79 -6.97 -39.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000922229127.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.362 kcal
(2) G-P(sol) polarization free energy of solvation -32.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.574 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.606 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds