Wall clock time and date at job start Mon Mar 30 2020 03:09:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 C 1.53000 * 109.47010 * 115.90218 * 3 2 1
5 5 N 1.46504 * 112.84947 * 304.03966 * 4 3 2
6 6 C 1.34775 * 119.99567 * 293.93489 * 5 4 3
7 7 O 1.21591 * 120.00617 * 354.97014 * 6 5 4
8 8 N 1.34785 * 119.99728 * 174.96676 * 6 5 4
9 9 C 1.46498 * 119.99893 * 180.02562 * 8 6 5
10 10 C 1.50692 * 109.46973 * 179.97438 * 9 8 6
11 11 H 1.08003 * 120.00566 * 359.97438 * 10 9 8
12 12 C 1.37886 * 120.00346 * 179.97438 * 10 9 8
13 13 N 1.31513 * 119.99439 * 359.97438 * 12 10 9
14 14 Si 1.86794 * 120.00275 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47365 * 60.00126 * 14 12 10
16 16 H 1.48506 * 109.46957 * 179.97438 * 14 12 10
17 17 H 1.48506 * 109.47104 * 300.00025 * 14 12 10
18 18 C 1.53783 * 113.69136 * 75.30784 * 4 3 2
19 19 C 1.53780 * 87.08168 * 139.99236 * 18 4 3
20 20 C 1.53778 * 113.61620 * 172.84388 * 4 3 2
21 21 H 4.44641 * 5.63371 * 180.02562 * 4 1 2
22 22 H 1.08995 * 109.47531 * 355.89819 * 3 2 1
23 23 H 1.09001 * 109.46952 * 235.89481 * 3 2 1
24 24 H 0.96999 * 120.00039 * 113.93684 * 5 4 3
25 25 H 0.96994 * 119.99874 * 359.97438 * 8 6 5
26 26 H 1.09000 * 109.46753 * 299.99766 * 9 8 6
27 27 H 1.09001 * 109.47215 * 60.00051 * 9 8 6
28 28 H 0.97001 * 119.99839 * 179.97438 * 13 12 10
29 29 H 1.09008 * 113.61172 * 254.54075 * 18 4 3
30 30 H 1.08991 * 113.61615 * 25.44158 * 18 4 3
31 31 H 1.08996 * 113.61697 * 220.01335 * 19 18 4
32 32 H 1.09004 * 113.61218 * 89.11465 * 19 18 4
33 33 H 1.09005 * 113.61294 * 334.48383 * 20 4 3
34 34 H 1.08996 * 113.61862 * 105.38344 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1557 0.6310 -1.2976
5 7 2.6331 -0.0312 -2.4954
6 6 2.9842 -1.3033 -2.7694
7 8 3.8048 -1.8707 -2.0744
8 7 2.4256 -1.9464 -3.8139
9 6 2.8067 -3.3293 -4.1114
10 6 2.0436 -3.8122 -5.3177
11 1 1.3442 -3.1550 -5.8131
12 6 2.2382 -5.0932 -5.7893
13 7 3.0901 -5.8934 -5.1865
14 14 1.2917 -5.6920 -7.2842
15 1 1.6095 -4.8286 -8.4499
16 1 1.6791 -7.0934 -7.5867
17 1 -0.1656 -5.6300 -7.0050
18 6 3.0242 2.1628 -1.3337
19 6 4.4034 2.1865 -2.0135
20 6 4.6790 0.8398 -1.3242
21 1 -1.0500 0.0001 0.0002
22 1 3.0098 -1.0241 0.0735
23 1 3.0090 0.5771 0.8509
24 1 2.0345 0.4458 -3.0912
25 1 1.7707 -1.4939 -4.3680
26 1 3.8765 -3.3754 -4.3153
27 1 2.5722 -3.9629 -3.2560
28 1 3.2268 -6.7947 -5.5180
29 1 2.2158 2.5167 -1.9736
30 1 3.0162 2.6237 -0.3461
31 1 5.0474 2.9946 -1.6665
32 1 4.3557 2.1191 -3.1004
33 1 5.1235 0.9390 -0.3339
34 1 5.2066 0.1256 -1.9564
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000922229127.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:55
Heat of formation + Delta-G solvation = 13.270158 kcal
Electronic energy + Delta-G solvation = -16481.823172 eV
Core-core repulsion = 13801.800308 eV
Total energy + Delta-G solvation = -2680.022864 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.56008 -39.40805 -36.05286 -34.70619 -34.51930 -33.60646 -30.06897 -28.98432
-26.65125 -25.07322 -23.90216 -21.95797 -20.23516 -19.77034 -18.91652 -18.03522
-17.12667 -16.63816 -16.53018 -15.85811 -15.67506 -15.21780 -14.85032 -14.72712
-14.21736 -14.01497 -13.88341 -13.20729 -12.90905 -12.69538 -12.51298 -12.22985
-12.05189 -11.83338 -11.49880 -11.43336 -11.18908 -11.10925 -10.78617 -10.74496
-10.08205 -9.54996 -8.28458 -6.45162 1.42596 1.47341 1.55386 1.86582
1.93593 2.00056 2.31411 2.39626 3.06255 3.38563 3.51747 3.60625
3.84925 3.99517 4.04641 4.51889 4.63528 4.81260 4.85989 4.91718
5.06989 5.08391 5.13807 5.19673 5.24311 5.27511 5.42712 5.49119
5.69332 5.82559 5.86008 6.28480 6.66673 6.77062 7.24531 7.35052
7.78955 8.83790
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034285 B = 0.005426 C = 0.005146
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 816.486901 B = 5158.942029 C = 5439.542824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.202 4.202
3 C -0.017 4.017
4 C 0.163 3.837
5 N -0.713 5.713
6 C 0.695 3.305
7 O -0.638 6.638
8 N -0.727 5.727
9 C 0.289 3.711
10 C -0.557 4.557
11 H 0.082 0.918
12 C 0.004 3.996
13 N -0.931 5.931
14 Si 0.987 3.013
15 H -0.262 1.262
16 H -0.284 1.284
17 H -0.263 1.263
18 C -0.114 4.114
19 C -0.129 4.129
20 C -0.147 4.147
21 H 0.242 0.758
22 H 0.061 0.939
23 H 0.122 0.878
24 H 0.407 0.593
25 H 0.402 0.598
26 H -0.016 1.016
27 H -0.018 1.018
28 H 0.269 0.731
29 H 0.083 0.917
30 H 0.118 0.882
31 H 0.092 0.908
32 H 0.072 0.928
33 H 0.105 0.895
34 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.765 18.506 6.530 19.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.202 4.202
3 C -0.055 4.055
4 C 0.076 3.924
5 N -0.369 5.369
6 C 0.395 3.605
7 O -0.520 6.520
8 N -0.381 5.381
9 C 0.166 3.834
10 C -0.595 4.595
11 H 0.100 0.900
12 C -0.195 4.195
13 N -0.569 5.569
14 Si 0.809 3.191
15 H -0.186 1.186
16 H -0.210 1.210
17 H -0.187 1.187
18 C -0.152 4.152
19 C -0.166 4.166
20 C -0.185 4.185
21 H 0.258 0.742
22 H 0.079 0.921
23 H 0.140 0.860
24 H 0.243 0.757
25 H 0.236 0.764
26 H 0.002 0.998
27 H 0.000 1.000
28 H 0.078 0.922
29 H 0.101 0.899
30 H 0.136 0.864
31 H 0.111 0.889
32 H 0.090 0.910
33 H 0.123 0.877
34 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -2.943 17.797 7.151 19.404
hybrid contribution -0.753 -0.775 -1.058 1.512
sum -3.695 17.023 6.093 18.454
Atomic orbital electron populations
1.25548 0.96681 1.00642 1.00335 1.23322 0.94968 1.00923 1.00962
1.19095 0.85272 1.02269 0.98833 1.21257 0.94722 0.93482 0.82926
1.44612 1.53115 1.11418 1.27762 1.16265 0.81129 0.81901 0.81202
1.90819 1.38898 1.68570 1.53666 1.45336 1.46011 1.15570 1.31187
1.18337 0.93835 0.76800 0.94420 1.21576 1.25389 0.99520 1.12984
0.90004 1.26074 0.96115 0.96459 1.00894 1.70141 1.36203 1.08252
1.42353 0.85186 0.78716 0.77151 0.78006 1.18630 1.20959 1.18719
1.23206 0.98085 0.90516 1.03359 1.22782 0.97389 0.96779 0.99683
1.23324 0.94942 0.97976 1.02269 0.74187 0.92056 0.86032 0.75697
0.76360 0.99760 1.00026 0.92223 0.89863 0.86393 0.88904 0.90969
0.87684 0.94113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -5.25 19.25 74.32 1.43 -3.82 16
2 C -0.20 -5.60 12.83 31.13 0.40 -5.20 16
3 C -0.02 -0.46 5.01 28.79 0.14 -0.32 16
4 C 0.16 4.17 0.54 4.13 0.00 4.18 16
5 N -0.71 -21.73 4.74 -435.59 -2.06 -23.79 16
6 C 0.70 29.86 8.12 179.05 1.45 31.31 16
7 O -0.64 -33.04 14.23 -4.00 -0.06 -33.10 16
8 N -0.73 -32.73 5.55 -482.30 -2.68 -35.41 16
9 C 0.29 16.55 5.43 85.63 0.46 17.02 16
10 C -0.56 -31.14 9.28 25.60 0.24 -30.91 16
11 H 0.08 4.14 7.60 -2.91 -0.02 4.11 16
12 C 0.00 0.24 5.46 84.66 0.46 0.70 16
13 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16
14 Si 0.99 42.96 29.54 68.60 2.03 44.98 16
15 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16
16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16
17 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16
18 C -0.11 -1.86 7.24 31.12 0.23 -1.64 16
19 C -0.13 -2.33 7.99 31.12 0.25 -2.08 16
20 C -0.15 -3.71 6.95 31.12 0.22 -3.49 16
21 H 0.24 3.99 7.80 -4.42 -0.03 3.95 16
22 H 0.06 2.18 7.16 -2.39 -0.02 2.16 16
23 H 0.12 2.42 8.10 -2.39 -0.02 2.40 16
24 H 0.41 9.91 8.68 -92.71 -0.80 9.11 16
25 H 0.40 15.13 8.34 -92.71 -0.77 14.35 16
26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
27 H -0.02 -1.18 8.14 -2.39 -0.02 -1.19 16
28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16
29 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16
30 H 0.12 1.42 8.07 -2.39 -0.02 1.40 16
31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
33 H 0.10 2.20 8.10 -2.38 -0.02 2.18 16
34 H 0.04 1.38 7.18 -2.39 -0.02 1.37 16
Total: -1.00 -75.25 296.77 2.33 -72.92
By element:
Atomic # 1 Polarization: 26.06 SS G_CDS: -0.47 Total: 25.59 kcal
Atomic # 6 Polarization: 0.47 SS G_CDS: 5.29 Total: 5.75 kcal
Atomic # 7 Polarization: -111.69 SS G_CDS: -4.46 Total: -116.14 kcal
Atomic # 8 Polarization: -33.04 SS G_CDS: -0.06 Total: -33.10 kcal
Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal
Total: -75.25 2.33 -72.92 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000922229127.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.190 kcal
(2) G-P(sol) polarization free energy of solvation -75.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.945 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds