Wall clock time and date at job start Mon Mar 30 2020 03:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45204 * 109.46790 * 2 1 4 4 C 1.34872 * 116.99533 * 179.97438 * 3 2 1 5 5 O 1.21600 * 120.00000 * 359.97438 * 4 3 2 6 6 C 1.46715 * 120.00021 * 179.97438 * 4 3 2 7 7 N 1.37977 * 125.70738 * 0.26489 * 6 4 3 8 8 H 0.96994 * 125.32860 * 0.03045 * 7 6 4 9 9 C 1.34354 * 109.34858 * 180.14894 * 7 6 4 10 10 C 1.50703 * 125.91029 * 179.88751 * 9 7 6 11 11 C 1.39535 * 108.18451 * 359.62907 * 9 7 6 12 12 C 1.41516 * 126.57886 * 180.21061 * 11 9 7 13 13 H 1.07998 * 119.99572 * 309.15006 * 12 11 9 14 14 C 1.39686 * 119.99694 * 129.15674 * 12 11 9 15 15 N 1.31045 * 119.99391 * 171.37585 * 14 12 11 16 16 Si 1.86793 * 120.00482 * 351.37719 * 14 12 11 17 17 H 1.48503 * 109.47341 * 95.73553 * 16 14 12 18 18 H 1.48499 * 109.47450 * 215.73822 * 16 14 12 19 19 H 1.48498 * 109.47111 * 335.73599 * 16 14 12 20 20 C 1.36285 * 125.71010 * 179.97438 * 6 4 3 21 21 C 1.50698 * 126.47899 * 0.02768 * 20 6 4 22 22 H 1.08998 * 109.47109 * 300.00164 * 1 2 3 23 23 H 1.09002 * 109.46993 * 60.00520 * 1 2 3 24 24 H 1.09002 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47268 * 239.99399 * 2 1 3 26 26 H 1.09002 * 109.46993 * 119.99479 * 2 1 3 27 27 H 1.08998 * 109.47249 * 264.61314 * 10 9 7 28 28 H 1.09004 * 109.47081 * 144.61064 * 10 9 7 29 29 H 1.08999 * 109.46745 * 24.61682 * 10 9 7 30 30 H 0.97001 * 119.99127 * 180.02562 * 15 14 12 31 31 H 1.09007 * 109.46959 * 276.15843 * 21 20 6 32 32 H 1.08995 * 109.47385 * 36.15824 * 21 20 6 33 33 H 1.09005 * 109.46942 * 156.16314 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3511 1.5457 0.0005 5 8 4.0918 0.5813 0.0015 6 6 3.9119 2.9014 0.0000 7 7 3.1844 4.0739 0.0041 8 1 2.2163 4.1332 0.0083 9 6 4.0269 5.1205 -0.0011 10 6 3.6302 6.5744 -0.0014 11 6 5.3326 4.6285 -0.0003 12 6 6.5225 5.3946 -0.0005 13 1 6.6570 6.1828 -0.7264 14 6 7.5229 5.1311 0.9381 15 7 8.6890 5.7201 0.8355 16 14 7.1985 3.9393 2.3394 17 1 7.7043 2.5926 1.9711 18 1 7.8951 4.4122 3.5627 19 1 5.7382 3.8658 2.5987 20 6 5.2385 3.2135 0.0010 21 6 6.3881 2.2391 0.0021 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.6231 6.9488 -1.0250 28 1 4.3456 7.1462 0.5897 29 1 2.6352 6.6796 0.4310 30 1 9.3838 5.5368 1.4871 31 1 6.5932 1.9204 1.0242 32 1 6.1294 1.3711 -0.6041 33 1 7.2734 2.7212 -0.4127 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037624461.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:36 Heat of formation + Delta-G solvation = -75.741684 kcal Electronic energy + Delta-G solvation = -16981.772949 eV Core-core repulsion = 14200.171580 eV Total energy + Delta-G solvation = -2781.601369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.19149 -40.79731 -37.61486 -35.36254 -33.59780 -32.89391 -32.13609 -29.32036 -27.73613 -26.76464 -24.12045 -22.62481 -20.90578 -20.32845 -19.48987 -18.18257 -17.78199 -17.59819 -16.53969 -15.96096 -15.63345 -15.09551 -14.82144 -14.61158 -14.22906 -14.00093 -13.61376 -13.53244 -13.24747 -13.22562 -13.05928 -12.83761 -12.53507 -12.38492 -12.23274 -11.87731 -11.79228 -11.54756 -11.37743 -10.76590 -9.29928 -8.77352 -8.42292 -6.21807 0.30837 1.28866 1.36591 1.51712 1.61935 1.86505 2.20012 2.33217 2.44114 3.18385 3.93069 3.99945 4.09628 4.26254 4.33814 4.42458 4.52097 4.72910 4.76944 4.80571 4.91161 4.94190 5.02768 5.12296 5.21903 5.33944 5.36653 5.42542 5.67051 5.91460 6.19022 6.55573 6.76271 6.86651 6.96390 7.23339 8.67776 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.008231 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.872538 B = 3400.783985 C = 3977.408250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.540 3.460 5 O -0.534 6.534 6 C -0.079 4.079 7 N -0.509 5.509 8 H 0.427 0.573 9 C 0.007 3.993 10 C -0.064 4.064 11 C -0.042 4.042 12 C -0.465 4.465 13 H 0.050 0.950 14 C 0.054 3.946 15 N -0.907 5.907 16 Si 0.925 3.075 17 H -0.246 1.246 18 H -0.293 1.293 19 H -0.265 1.265 20 C -0.126 4.126 21 C -0.089 4.089 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.275 0.725 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 -7.038 0.065 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.281 6.281 4 C 0.388 3.612 5 O -0.426 6.426 6 C -0.189 4.189 7 N -0.106 5.106 8 H 0.267 0.733 9 C -0.112 4.112 10 C -0.121 4.121 11 C -0.047 4.047 12 C -0.501 4.501 13 H 0.068 0.932 14 C -0.152 4.152 15 N -0.542 5.542 16 Si 0.752 3.248 17 H -0.171 1.171 18 H -0.220 1.220 19 H -0.190 1.190 20 C -0.137 4.137 21 C -0.146 4.146 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.452 -7.347 0.132 18.018 hybrid contribution 0.209 -0.470 0.527 0.737 sum -16.242 -7.818 0.659 18.038 Atomic orbital electron populations 1.21820 0.89810 1.04567 1.03729 1.23340 0.97307 0.78818 1.02593 1.86550 1.22620 1.34265 1.84617 1.19913 0.80765 0.87857 0.72619 1.90795 1.60930 1.41740 1.49097 1.18421 0.90856 0.83704 1.25893 1.41120 1.08780 1.03661 1.57060 0.73288 1.21817 0.89478 0.90922 1.08962 1.20203 1.02014 0.86871 1.03040 1.17441 0.92598 0.90263 1.04424 1.18249 0.98980 1.17282 1.15546 0.93155 1.26103 0.93632 0.96006 0.99411 1.69788 1.04426 1.43481 1.36515 0.86303 0.79379 0.80474 0.78690 1.17118 1.21993 1.18983 1.20216 0.92035 0.95635 1.05802 1.20507 0.95689 0.97063 1.01292 0.91269 0.91141 0.87813 0.91286 0.91490 0.90520 0.91180 0.89330 0.91510 0.92532 0.91032 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 10.29 71.98 0.74 -1.29 16 2 C 0.05 1.19 6.20 71.98 0.45 1.64 16 3 O -0.36 -10.90 10.23 -57.86 -0.59 -11.49 16 4 C 0.54 20.61 7.94 70.04 0.56 21.16 16 5 O -0.53 -22.45 14.60 19.51 0.28 -22.17 16 6 C -0.08 -3.30 7.01 39.94 0.28 -3.02 16 7 N -0.51 -18.08 6.01 -170.63 -1.03 -19.11 16 8 H 0.43 11.37 8.96 -92.71 -0.83 10.54 16 9 C 0.01 0.30 7.26 42.49 0.31 0.61 16 10 C -0.06 -2.00 10.20 71.24 0.73 -1.27 16 11 C -0.04 -2.08 4.59 -21.28 -0.10 -2.18 16 12 C -0.47 -26.43 9.28 23.43 0.22 -26.21 16 13 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 14 C 0.05 3.06 5.10 85.16 0.43 3.50 16 15 N -0.91 -54.08 13.94 21.79 0.30 -53.77 16 16 Si 0.92 45.89 23.70 68.60 1.63 47.51 16 17 H -0.25 -11.62 5.40 99.48 0.54 -11.08 16 18 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.27 -13.37 6.86 99.48 0.68 -12.69 16 20 C -0.13 -6.07 4.84 -19.44 -0.09 -6.17 16 21 C -0.09 -4.20 7.42 71.24 0.53 -3.68 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 2.44 8.06 -2.39 -0.02 2.42 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.28 15.26 8.30 -92.71 -0.77 14.49 16 31 H 0.06 2.67 4.84 -2.38 -0.01 2.66 16 32 H 0.07 3.19 6.74 -2.39 -0.02 3.17 16 33 H 0.06 2.77 7.33 -2.38 -0.02 2.76 16 Total: -1.00 -68.65 277.26 4.74 -63.91 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.10 Total: 12.03 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.05 Total: -16.92 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -0.72 Total: -72.88 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.31 Total: -33.66 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.63 Total: 47.51 kcal Total: -68.65 4.74 -63.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037624461.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.831 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds