Wall clock time and date at job start Mon Mar 30 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47201 * 2 1 4 4 C 1.35947 * 117.00022 * 179.97438 * 3 2 1 5 5 C 1.38571 * 120.08346 * 359.97438 * 4 3 2 6 6 C 1.38239 * 120.00756 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.90560 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.46717 * 90.00109 * 7 6 5 9 9 C 1.38320 * 120.18600 * 359.97438 * 6 5 4 10 10 C 1.38163 * 120.17089 * 359.72711 * 9 6 5 11 11 C 1.38760 * 119.98128 * 0.54795 * 10 9 6 12 12 O 1.35802 * 120.08468 * 179.72506 * 11 10 9 13 13 C 1.34804 * 117.00441 * 354.40504 * 12 11 10 14 14 H 1.07997 * 119.99976 * 5.05871 * 13 12 11 15 15 C 1.38641 * 119.99806 * 185.06475 * 13 12 11 16 16 N 1.31561 * 120.00498 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99683 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47009 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46917 * 119.99987 * 17 15 13 20 20 H 1.48499 * 109.46971 * 239.99928 * 17 15 13 21 21 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47279 * 300.00204 * 1 2 3 23 23 H 1.09002 * 109.46918 * 60.00748 * 1 2 3 24 24 H 1.08996 * 109.47279 * 239.99796 * 2 1 3 25 25 H 1.09007 * 109.46721 * 119.99954 * 2 1 3 26 26 H 1.07994 * 119.99272 * 359.97438 * 5 4 3 27 27 H 1.08995 * 109.47301 * 210.00129 * 7 6 5 28 28 H 1.09003 * 109.47133 * 330.00699 * 7 6 5 29 29 H 1.00899 * 111.00174 * 56.04876 * 8 7 6 30 30 H 1.00904 * 110.99583 * 180.02562 * 8 7 6 31 31 H 1.08002 * 119.91466 * 179.97438 * 9 6 5 32 32 H 1.07997 * 120.00776 * 180.27683 * 10 9 6 33 33 H 0.96999 * 120.00737 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3541 1.5254 0.0005 5 6 4.1998 0.4277 0.0016 6 6 5.5700 0.6106 0.0027 7 6 6.4877 -0.5848 0.0044 8 7 6.7870 -0.9742 -1.3801 9 6 6.1012 1.8878 0.0022 10 6 5.2650 2.9876 -0.0051 11 6 3.8885 2.8121 -0.0004 12 8 3.0647 3.8917 -0.0019 13 6 3.6439 5.1039 0.1091 14 1 4.7205 5.1897 0.1117 15 6 2.8576 6.2403 0.2200 16 7 1.5461 6.1359 0.2165 17 14 3.6603 7.9200 0.3746 18 1 5.1372 7.7666 0.3537 19 1 3.2351 8.7782 -0.7604 20 1 3.2467 8.5505 1.6539 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 3.7884 -0.5708 0.0024 27 1 7.4144 -0.3308 0.5189 28 1 6.0024 -1.4146 0.5183 29 1 7.1787 -0.2010 -1.8966 30 1 7.4009 -1.7746 -1.4059 31 1 7.1724 2.0256 0.0035 32 1 5.6825 3.9836 -0.0100 33 1 0.9960 6.9310 0.2937 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037699084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:36 Heat of formation + Delta-G solvation = -43.611192 kcal Electronic energy + Delta-G solvation = -16588.881969 eV Core-core repulsion = 13808.673883 eV Total energy + Delta-G solvation = -2780.208086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.60039 -37.55308 -36.68524 -33.81814 -32.18240 -31.30930 -29.40260 -28.45787 -25.58350 -23.99218 -23.22667 -21.13308 -20.48161 -17.94578 -17.52503 -16.25517 -15.77790 -15.51031 -14.97473 -14.55133 -14.27363 -13.81486 -13.56030 -13.39955 -13.17345 -12.41288 -12.29772 -12.26860 -12.00622 -11.56376 -11.17954 -11.04885 -10.98580 -10.78206 -10.47160 -10.25320 -10.12903 -9.39101 -8.79829 -8.56731 -7.83292 -6.88784 -6.39015 -3.95566 2.18570 2.28573 3.14870 3.16145 3.21861 3.94337 3.99525 4.45622 4.95984 5.10863 5.20690 5.26546 5.30828 5.43452 5.46623 5.58667 5.79344 5.80561 5.88875 5.92076 6.14423 6.25753 6.37240 6.48965 6.67293 6.94322 7.14132 7.21973 7.29522 7.37422 7.56785 7.67136 8.01375 8.25515 9.05273 9.77489 10.78522 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020711 B = 0.007769 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.626906 B = 3603.152243 C = 4863.059315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.301 6.301 4 C 0.058 3.942 5 C -0.145 4.145 6 C -0.151 4.151 7 C 0.118 3.882 8 N -0.847 5.847 9 C -0.096 4.096 10 C -0.213 4.213 11 C 0.135 3.865 12 O -0.164 6.164 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.857 5.857 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.118 0.882 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.341 0.659 30 H 0.333 0.667 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -10.589 -0.132 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.216 6.216 4 C 0.013 3.987 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.011 4.011 8 N -0.377 5.377 9 C -0.115 4.115 10 C -0.232 4.232 11 C 0.081 3.919 12 O -0.068 6.068 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.492 5.492 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.136 0.864 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.123 0.877 32 H 0.151 0.849 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.388 -10.392 -0.187 11.282 hybrid contribution 1.564 0.840 0.321 1.803 sum 5.952 -9.552 0.134 11.256 Atomic orbital electron populations 1.21729 0.93490 1.01786 1.03678 1.22593 0.95419 0.83564 1.00337 1.86228 1.18824 1.26921 1.89605 1.18172 0.82395 0.91509 1.06645 1.20524 0.93167 0.96281 1.06467 1.18930 0.92937 0.93412 1.09982 1.20456 0.96163 0.95526 0.88995 1.58770 1.53685 1.10950 1.14308 1.20507 0.98099 0.91754 1.01108 1.20880 0.91918 0.99499 1.10946 1.18684 0.89568 0.86570 0.97059 1.84071 1.32438 1.11973 1.78295 1.21395 0.92706 0.80671 1.51958 0.89091 1.25289 0.95405 0.99205 0.96665 1.70078 1.03523 1.29983 1.45596 0.85662 0.78999 0.80571 0.78250 1.19127 1.20160 1.20170 0.91192 0.91606 0.91601 0.92889 0.93057 0.86430 0.95618 0.91324 0.84615 0.85554 0.87727 0.84941 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 37.16 0.38 -1.71 16 2 C 0.06 0.94 5.46 37.16 0.20 1.14 16 3 O -0.30 -6.85 9.92 -34.01 -0.34 -7.19 16 4 C 0.06 1.33 6.70 -39.05 -0.26 1.07 16 5 C -0.14 -2.78 8.69 -39.46 -0.34 -3.13 16 6 C -0.15 -2.69 5.39 -104.59 -0.56 -3.25 16 7 C 0.12 1.64 6.91 -4.97 -0.03 1.60 16 8 N -0.85 -10.61 9.61 -11.40 -0.11 -10.72 16 9 C -0.10 -1.79 9.69 -39.58 -0.38 -2.17 16 10 C -0.21 -4.74 9.16 -39.42 -0.36 -5.10 16 11 C 0.14 3.45 6.66 -38.98 -0.26 3.19 16 12 O -0.16 -4.91 9.54 -14.47 -0.14 -5.05 16 13 C -0.39 -11.20 9.49 30.88 0.29 -10.90 16 14 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 15 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 17 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.80 7.67 -51.93 -0.40 0.41 16 25 H 0.05 0.76 7.66 -51.92 -0.40 0.37 16 26 H 0.12 1.98 6.30 -52.49 -0.33 1.65 16 27 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.07 0.89 8.08 -51.93 -0.42 0.48 16 29 H 0.34 4.18 8.99 -39.29 -0.35 3.83 16 30 H 0.33 3.21 9.08 -39.29 -0.36 2.85 16 31 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 285.05 15.07 4.30 4.30 Total: -1.00 -32.65 285.05 -6.05 -38.70 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.07 Total: 7.45 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.43 Total: -18.28 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.65 Total: -35.73 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.48 Total: -12.24 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.65 -6.05 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037699084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.907 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds