Wall clock time and date at job start Mon Mar 30 2020 03:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35937 * 117.00169 * 2 1 4 4 C 1.38796 * 119.98723 * 0.02562 * 3 2 1 5 5 C 1.38030 * 120.01389 * 179.74616 * 4 3 2 6 6 C 1.38903 * 119.98576 * 0.50662 * 5 4 3 7 7 O 1.35786 * 120.01364 * 179.74511 * 6 5 4 8 8 C 1.34823 * 117.00044 * 5.60241 * 7 6 5 9 9 H 1.07999 * 119.99694 * 354.93333 * 8 7 6 10 10 C 1.38625 * 120.00074 * 174.93566 * 8 7 6 11 11 N 1.31573 * 120.00130 * 359.72759 * 10 8 7 12 12 Si 1.86800 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47113 * 90.00143 * 12 10 8 14 14 H 1.48496 * 109.47515 * 210.00307 * 12 10 8 15 15 H 1.48502 * 109.47372 * 330.00285 * 12 10 8 16 16 C 1.38867 * 119.97068 * 359.46912 * 6 5 4 17 17 C 1.50703 * 120.00175 * 180.30177 * 16 6 5 18 18 C 1.52994 * 109.47094 * 84.99823 * 17 16 6 19 19 N 1.46902 * 109.46972 * 179.97438 * 18 17 16 20 20 C 1.38063 * 119.98748 * 0.27491 * 16 6 5 21 21 H 1.08996 * 109.47437 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47372 * 300.00228 * 1 2 3 23 23 H 1.09004 * 109.46910 * 59.99908 * 1 2 3 24 24 H 1.07998 * 119.99065 * 0.02562 * 4 3 2 25 25 H 1.08003 * 120.00405 * 180.24911 * 5 4 3 26 26 H 0.97001 * 120.00157 * 180.02562 * 11 10 8 27 27 H 1.08996 * 109.46529 * 205.00062 * 17 16 6 28 28 H 1.08994 * 109.47199 * 324.99765 * 17 16 6 29 29 H 1.08996 * 109.47627 * 299.99566 * 18 17 16 30 30 H 1.09008 * 109.47355 * 60.00406 * 18 17 16 31 31 H 1.00898 * 111.00190 * 56.04618 * 19 18 17 32 32 H 1.00897 * 111.00199 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.99176 * 179.97438 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2900 2.3751 0.0005 5 6 1.9161 3.6052 0.0058 6 6 3.3032 3.6782 0.0000 7 8 3.9197 4.8881 0.0000 8 6 3.1329 5.9760 0.1230 9 1 2.0585 5.8669 0.1335 10 6 3.7030 7.2345 0.2361 11 7 5.0120 7.3668 0.2287 12 14 2.6129 8.7419 0.4058 13 1 2.3510 9.0040 1.8439 14 1 3.2947 9.9162 -0.1952 15 1 1.3261 8.5038 -0.2962 16 6 4.0592 2.5134 0.0000 17 6 5.5642 2.5917 0.0005 18 6 6.0664 2.7435 1.4377 19 7 7.5335 2.8193 1.4382 20 6 3.4318 1.2835 0.0000 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.2115 2.3182 0.0014 25 1 1.3275 4.5108 0.0103 26 1 5.4110 8.2474 0.3081 27 1 5.9755 1.6806 -0.4339 28 1 5.8834 3.4514 -0.5886 29 1 5.6551 3.6546 1.8721 30 1 5.7472 1.8837 2.0269 31 1 7.8571 3.5695 0.8462 32 1 7.8900 2.9203 2.3767 33 1 4.0197 0.3775 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037720017.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:03 Heat of formation + Delta-G solvation = -47.418329 kcal Electronic energy + Delta-G solvation = -16678.725727 eV Core-core repulsion = 13898.352551 eV Total energy + Delta-G solvation = -2780.373176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65074 -38.12561 -35.93480 -34.55313 -32.23111 -31.22697 -29.08546 -26.74403 -26.49230 -25.28025 -22.24292 -21.53587 -20.16871 -18.02904 -17.31197 -16.57657 -15.55231 -15.27469 -15.19763 -14.52550 -14.43273 -13.92432 -13.62131 -13.45435 -13.07381 -12.66843 -12.34146 -11.82032 -11.78503 -11.63555 -11.27697 -11.10285 -11.06611 -10.61927 -10.50906 -10.33870 -9.99871 -9.32309 -8.76204 -8.29480 -8.12409 -6.87802 -6.45898 -4.03024 2.02108 2.35303 3.10583 3.11837 3.15997 3.81439 3.95493 4.45980 5.03327 5.07456 5.27864 5.29856 5.38447 5.47928 5.62857 5.66932 5.72038 5.90455 6.04076 6.15879 6.22479 6.36965 6.59460 6.69282 6.75793 7.01730 7.11156 7.18983 7.32955 7.52567 7.54776 7.83864 7.98482 8.05761 9.00572 9.71132 10.72215 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.008455 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.453515 B = 3310.679813 C = 4670.413212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.328 6.328 3 C 0.031 3.969 4 C -0.157 4.157 5 C -0.200 4.200 6 C 0.131 3.869 7 O -0.175 6.175 8 C -0.391 4.391 9 H 0.089 0.911 10 C 0.040 3.960 11 N -0.864 5.864 12 Si 0.938 3.062 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.269 1.269 16 C -0.121 4.121 17 C -0.057 4.057 18 C 0.069 3.931 19 N -0.854 5.854 20 C -0.098 4.098 21 H 0.089 0.911 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.113 0.887 25 H 0.130 0.870 26 H 0.268 0.732 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.342 0.658 32 H 0.334 0.666 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -7.752 1.040 8.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C -0.013 4.013 4 C -0.175 4.175 5 C -0.219 4.219 6 C 0.078 3.922 7 O -0.080 6.080 8 C -0.467 4.467 9 H 0.106 0.894 10 C -0.164 4.164 11 N -0.500 5.500 12 Si 0.763 3.237 13 H -0.200 1.200 14 H -0.203 1.203 15 H -0.193 1.193 16 C -0.123 4.123 17 C -0.095 4.095 18 C -0.062 4.062 19 N -0.382 5.382 20 C -0.117 4.117 21 H 0.107 0.893 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.131 0.869 25 H 0.148 0.852 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.812 -8.410 0.723 9.262 hybrid contribution -1.237 1.950 0.510 2.366 sum -5.049 -6.460 1.234 8.291 Atomic orbital electron populations 1.22834 0.79993 1.02585 1.00761 1.85954 1.19991 1.27651 1.90678 1.18561 0.92017 0.83492 1.07219 1.20863 0.98659 0.92133 1.05894 1.20984 0.94519 0.97471 1.08926 1.19115 0.90613 0.87162 0.95332 1.83974 1.34737 1.09994 1.79264 1.21269 0.90378 0.83036 1.52046 0.89390 1.25207 0.96382 0.98079 0.96718 1.70027 1.09230 1.24238 1.46471 0.85762 0.79208 0.80042 0.78725 1.19996 1.20285 1.19306 1.18721 0.95048 0.89973 1.08520 1.20182 0.90293 1.02375 0.96612 1.21706 0.86974 1.00362 0.97119 1.58871 1.10094 1.53664 1.15586 1.19840 0.90908 0.96715 1.04221 0.89300 0.93430 0.93430 0.86874 0.85211 0.92173 0.91598 0.90587 0.94406 0.91920 0.84599 0.85481 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.33 -5.52 10.50 -19.54 -0.21 -5.73 16 3 C 0.03 0.58 6.69 -39.19 -0.26 0.32 16 4 C -0.16 -2.97 9.03 -39.45 -0.36 -3.32 16 5 C -0.20 -4.34 9.16 -39.41 -0.36 -4.70 16 6 C 0.13 3.10 6.62 -39.10 -0.26 2.84 16 7 O -0.18 -4.80 8.89 -0.04 0.00 -4.80 16 8 C -0.39 -10.68 9.48 30.88 0.29 -10.38 16 9 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 10 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 11 N -0.86 -24.61 13.67 55.48 0.76 -23.86 16 12 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 13 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 16 C -0.12 -2.54 5.15 -104.45 -0.54 -3.07 16 17 C -0.06 -1.10 5.33 -27.88 -0.15 -1.25 16 18 C 0.07 1.27 6.77 -3.83 -0.03 1.24 16 19 N -0.85 -13.67 9.62 -10.37 -0.10 -13.77 16 20 C -0.10 -1.88 9.61 -39.46 -0.38 -2.26 16 21 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.11 1.80 6.29 -52.49 -0.33 1.47 16 25 H 0.13 2.80 5.63 -52.48 -0.30 2.50 16 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.07 1.15 8.05 -51.93 -0.42 0.74 16 28 H 0.08 1.63 7.69 -51.93 -0.40 1.23 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.34 5.50 8.99 -39.29 -0.35 5.15 16 32 H 0.33 4.64 9.08 -39.29 -0.36 4.28 16 33 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 283.75 15.07 4.28 4.28 Total: -1.00 -29.96 283.75 -5.48 -35.44 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.05 Total: 11.38 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.14 Total: -18.21 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.66 Total: -37.63 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.21 Total: -10.53 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.96 -5.48 -35.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037720017.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.974 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds