Wall clock time and date at job start Mon Mar 30 2020 03:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35939 * 117.00275 * 2 1 4 4 C 1.38565 * 120.08622 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.01193 * 180.02562 * 4 3 2 6 6 C 1.38318 * 120.18373 * 359.72380 * 5 4 3 7 7 C 1.38149 * 120.17093 * 0.55075 * 6 5 4 8 8 C 1.50701 * 120.00914 * 179.72342 * 7 6 5 9 9 C 1.52997 * 109.47212 * 264.72913 * 8 7 6 10 10 N 1.46894 * 109.47515 * 179.97438 * 9 8 7 11 11 C 1.38765 * 119.98330 * 359.45351 * 7 6 5 12 12 O 1.35799 * 120.08760 * 180.25329 * 11 7 6 13 13 C 1.34805 * 117.00175 * 89.99964 * 12 11 7 14 14 H 1.07997 * 120.00525 * 359.97438 * 13 12 11 15 15 C 1.38647 * 120.00200 * 179.97438 * 13 12 11 16 16 N 1.31572 * 119.99502 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00414 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46898 * 59.99561 * 17 15 13 19 19 H 1.48500 * 109.47178 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46794 * 299.99831 * 17 15 13 21 21 H 1.09000 * 109.47776 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46868 * 300.00328 * 1 2 3 23 23 H 1.09003 * 109.47398 * 59.99749 * 1 2 3 24 24 H 1.07997 * 119.99210 * 359.97438 * 4 3 2 25 25 H 1.08006 * 119.90574 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.91324 * 180.30285 * 6 5 4 27 27 H 1.09002 * 109.47060 * 24.72968 * 8 7 6 28 28 H 1.09001 * 109.47380 * 144.73056 * 8 7 6 29 29 H 1.09002 * 109.47153 * 299.99998 * 9 8 7 30 30 H 1.08998 * 109.47533 * 59.99628 * 9 8 7 31 31 H 1.00903 * 111.00455 * 179.97438 * 10 9 8 32 32 H 1.00899 * 111.00176 * 303.95826 * 10 9 8 33 33 H 0.96998 * 119.99662 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2934 2.3745 -0.0005 5 6 1.9226 3.6054 -0.0011 6 6 3.3038 3.6803 0.0047 7 6 4.0618 2.5254 -0.0005 8 6 5.5664 2.6114 -0.0005 9 6 6.0828 2.5144 -1.4374 10 7 7.5493 2.5988 -1.4375 11 6 3.4375 1.2861 0.0000 12 8 4.1806 0.1495 0.0001 13 6 4.5158 -0.3625 1.2013 14 1 4.1946 0.1302 2.1070 15 6 5.2730 -1.5216 1.2740 16 7 5.6640 -2.1222 0.1705 17 14 5.7381 -2.2307 2.9384 18 1 4.5054 -2.5591 3.6985 19 1 6.5425 -3.4637 2.7439 20 1 6.5357 -1.2331 3.6960 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2148 2.3195 -0.0014 25 1 1.3341 4.5110 -0.0019 26 1 3.7908 4.6443 0.0092 27 1 5.8760 3.5622 0.4335 28 1 5.9772 1.7919 0.5893 29 1 5.7732 1.5636 -1.8713 30 1 5.6720 3.3338 -2.0272 31 1 7.9150 2.5366 -2.3759 32 1 7.8630 3.4426 -0.9819 33 1 6.1934 -2.9333 0.2214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037721628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:30 Heat of formation + Delta-G solvation = -39.768319 kcal Electronic energy + Delta-G solvation = -17062.305179 eV Core-core repulsion = 14282.263732 eV Total energy + Delta-G solvation = -2780.041447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71445 -37.45081 -36.01172 -34.72103 -31.81930 -30.92849 -29.01816 -27.14856 -26.38375 -24.61874 -22.15688 -21.56421 -20.17799 -17.89487 -17.10094 -16.14228 -15.92607 -15.29404 -15.10780 -14.57334 -14.42239 -13.87659 -13.65807 -13.23484 -12.89423 -12.74532 -11.92676 -11.74928 -11.38007 -11.32315 -11.25589 -10.92975 -10.73765 -10.45576 -10.36107 -10.28827 -9.88610 -9.48862 -8.25584 -8.05425 -7.93785 -7.30904 -5.92078 -3.59443 1.89532 2.05001 3.35916 3.37224 3.40270 3.90433 4.19426 4.46753 4.96733 5.27459 5.31730 5.40656 5.47641 5.50180 5.56158 5.69930 5.80159 5.85304 5.87426 6.01939 6.09764 6.16467 6.65341 6.78608 6.81546 6.93438 7.00834 7.18729 7.46443 7.53625 7.56817 7.82812 8.08374 8.44531 9.50916 10.23051 11.27401 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.011509 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.312884 B = 2432.362662 C = 3692.371160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.290 6.290 3 C 0.095 3.905 4 C -0.210 4.210 5 C -0.114 4.114 6 C -0.147 4.147 7 C -0.080 4.080 8 C -0.069 4.069 9 C 0.075 3.925 10 N -0.846 5.846 11 C 0.118 3.882 12 O -0.222 6.222 13 C -0.357 4.357 14 H 0.063 0.937 15 C 0.032 3.968 16 N -0.880 5.880 17 Si 0.926 3.074 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.276 1.276 21 H 0.093 0.907 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.014 0.986 31 H 0.337 0.663 32 H 0.331 0.669 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 10.238 -1.050 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.202 6.202 3 C 0.049 3.951 4 C -0.229 4.229 5 C -0.132 4.132 6 C -0.166 4.166 7 C -0.082 4.082 8 C -0.106 4.106 9 C -0.055 4.055 10 N -0.374 5.374 11 C 0.071 3.929 12 O -0.134 6.134 13 C -0.433 4.433 14 H 0.081 0.919 15 C -0.167 4.167 16 N -0.521 5.521 17 Si 0.753 3.247 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.202 1.202 21 H 0.112 0.888 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.137 0.863 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.032 0.968 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.371 9.089 -0.839 10.591 hybrid contribution -0.449 0.776 0.376 0.972 sum -5.820 9.865 -0.463 11.463 Atomic orbital electron populations 1.22968 0.80427 1.03217 1.00254 1.86348 1.19363 1.26217 1.88319 1.19901 0.92591 0.84299 0.98336 1.21012 0.99158 0.92341 1.10343 1.20638 0.94370 0.96320 1.01881 1.20724 0.93509 0.97166 1.05161 1.20078 0.96060 0.91819 1.00211 1.20363 0.90289 1.02629 0.97349 1.21695 0.86611 1.00904 0.96278 1.58593 1.10122 1.44873 1.23844 1.18380 0.86830 0.88944 0.98735 1.83938 1.66631 1.33963 1.28895 1.20723 1.32828 1.08168 0.81625 0.91892 1.24921 0.97702 0.96145 0.97947 1.70014 1.37163 1.18947 1.26021 0.86033 0.78417 0.78542 0.81743 1.20379 1.20803 1.20193 0.88821 0.93473 0.93499 0.86302 0.86772 0.86799 0.92651 0.88100 0.89824 0.96762 0.85130 0.85711 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.29 -6.45 10.28 -33.99 -0.35 -6.80 16 3 C 0.09 2.08 6.70 -39.05 -0.26 1.82 16 4 C -0.21 -3.69 9.04 -39.46 -0.36 -4.05 16 5 C -0.11 -1.83 10.04 -39.55 -0.40 -2.23 16 6 C -0.15 -2.53 9.67 -39.58 -0.38 -2.91 16 7 C -0.08 -1.66 5.15 -104.46 -0.54 -2.20 16 8 C -0.07 -1.35 5.33 -27.88 -0.15 -1.50 16 9 C 0.08 1.38 6.77 -3.83 -0.03 1.36 16 10 N -0.85 -13.65 9.62 -10.37 -0.10 -13.75 16 11 C 0.12 2.87 5.58 -38.98 -0.22 2.65 16 12 O -0.22 -6.48 8.79 -14.47 -0.13 -6.61 16 13 C -0.36 -10.56 9.02 30.88 0.28 -10.28 16 14 H 0.06 1.81 7.76 -52.49 -0.41 1.41 16 15 C 0.03 0.96 5.49 -17.51 -0.10 0.86 16 16 N -0.88 -27.65 13.67 55.48 0.76 -26.89 16 17 Si 0.93 22.49 29.55 -169.99 -5.02 17.47 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 23 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 24 H 0.12 1.72 6.30 -52.49 -0.33 1.39 16 25 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 26 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 28 H 0.10 2.39 7.00 -51.93 -0.36 2.02 16 29 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.34 4.66 9.08 -39.29 -0.36 4.30 16 32 H 0.33 4.47 8.99 -39.29 -0.35 4.12 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -34.27 287.19 -5.94 -40.22 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.27 Total: 7.12 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.15 Total: -15.08 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.66 Total: -40.64 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.48 Total: -13.41 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.27 -5.94 -40.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037721628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.447 kcal (2) G-P(sol) polarization free energy of solvation -34.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds