Wall clock time and date at job start Mon Mar 30 2020 03:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35944 * 116.99898 * 2 1 4 4 C 1.38559 * 120.08824 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.01652 * 179.70306 * 4 3 2 6 6 C 1.38325 * 120.18020 * 0.55036 * 5 4 3 7 7 C 1.50703 * 119.91535 * 179.72704 * 6 5 4 8 8 C 1.53003 * 109.46690 * 269.72500 * 7 6 5 9 9 N 1.46900 * 109.46905 * 180.02562 * 8 7 6 10 10 C 1.38162 * 120.17012 * 359.44737 * 6 5 4 11 11 C 1.38761 * 119.98444 * 0.27631 * 10 6 5 12 12 O 1.35802 * 120.08862 * 179.97438 * 11 10 6 13 13 C 1.34808 * 117.00124 * 354.39897 * 12 11 10 14 14 H 1.07997 * 119.99931 * 5.07138 * 13 12 11 15 15 C 1.38640 * 119.99823 * 185.06346 * 13 12 11 16 16 N 1.31559 * 120.00173 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99637 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47333 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46795 * 120.00338 * 17 15 13 20 20 H 1.48494 * 109.47001 * 239.99808 * 17 15 13 21 21 H 1.08997 * 109.46995 * 59.99679 * 1 2 3 22 22 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46411 * 299.99747 * 1 2 3 24 24 H 1.07999 * 119.99400 * 0.02562 * 4 3 2 25 25 H 1.07992 * 119.91285 * 180.29739 * 5 4 3 26 26 H 1.08999 * 109.46923 * 149.72406 * 7 6 5 27 27 H 1.09003 * 109.46873 * 29.72161 * 7 6 5 28 28 H 1.08999 * 109.47016 * 59.99683 * 8 7 6 29 29 H 1.08998 * 109.46751 * 299.99664 * 8 7 6 30 30 H 1.00902 * 110.99986 * 56.04565 * 9 8 7 31 31 H 1.00899 * 110.99822 * 179.97438 * 9 8 7 32 32 H 1.07998 * 120.00480 * 180.25060 * 10 6 5 33 33 H 0.97003 * 120.00365 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2933 2.3745 0.0005 5 6 1.9224 3.6054 0.0067 6 6 3.3036 3.6805 0.0009 7 6 3.9832 5.0256 0.0015 8 6 4.2130 5.4814 -1.4408 9 7 4.8760 6.7923 -1.4403 10 6 4.0618 2.5255 0.0004 11 6 3.4376 1.2862 0.0000 12 8 4.1807 0.1496 -0.0011 13 6 5.5161 0.2916 -0.1188 14 1 5.9559 1.2779 -0.1244 15 6 6.3250 -0.8287 -0.2326 16 7 5.7892 -2.0302 -0.2262 17 14 8.1755 -0.6319 -0.3950 18 1 8.5235 0.8116 -0.3750 19 1 8.8475 -1.3184 0.7375 20 1 8.6265 -1.2327 -1.6759 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.2147 2.3195 0.0014 25 1 1.3340 4.5109 0.0120 26 1 4.9414 4.9483 0.5153 27 1 3.3526 5.7510 0.5157 28 1 3.2548 5.5586 -1.9545 29 1 4.8436 4.7560 -1.9549 30 1 5.7366 6.7621 -0.9144 31 1 5.0394 7.1152 -2.3822 32 1 5.1400 2.5872 0.0000 33 1 6.3551 -2.8141 -0.3054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037721758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:31 Heat of formation + Delta-G solvation = -69.161020 kcal Electronic energy + Delta-G solvation = -16573.601166 eV Core-core repulsion = 13792.285156 eV Total energy + Delta-G solvation = -2781.316010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27103 -39.22472 -38.32813 -35.90483 -34.28230 -32.15309 -30.83448 -28.88132 -27.51269 -27.00112 -23.56715 -23.30932 -21.73585 -19.83217 -19.32061 -17.80495 -17.15194 -16.71114 -16.64340 -16.19619 -15.76888 -15.46342 -15.20372 -15.02868 -14.89897 -14.44916 -13.96726 -13.52622 -13.25388 -12.93299 -12.80406 -12.51931 -12.40155 -12.16160 -12.07597 -11.77551 -11.59119 -11.32351 -10.80893 -9.64360 -9.45500 -8.63509 -8.44607 -6.11376 0.50603 0.67754 1.32891 1.42055 1.51730 2.16994 2.60654 2.78455 3.11547 3.44670 3.62928 3.97758 4.14339 4.26945 4.31939 4.37641 4.43825 4.46946 4.60029 4.69704 4.71146 4.80742 4.90996 5.12341 5.15519 5.20875 5.48023 5.50271 5.82867 5.97560 6.08030 6.19417 6.60316 6.65916 6.99089 7.83550 8.79092 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.009447 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.036476 B = 2963.127931 C = 4691.458202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.348 6.348 3 C 0.036 3.964 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.072 4.072 7 C -0.064 4.064 8 C 0.071 3.929 9 N -0.851 5.851 10 C -0.206 4.206 11 C 0.082 3.918 12 O -0.225 6.225 13 C -0.412 4.412 14 H 0.100 0.900 15 C -0.026 4.026 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.250 1.250 19 H -0.268 1.268 20 H -0.269 1.269 21 H 0.066 0.934 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.158 0.842 25 H 0.154 0.846 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.014 0.986 30 H 0.346 0.654 31 H 0.351 0.649 32 H 0.121 0.879 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 13.556 -1.327 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.263 6.263 3 C -0.009 4.009 4 C -0.176 4.176 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.101 4.101 8 C -0.060 4.060 9 N -0.382 5.382 10 C -0.226 4.226 11 C 0.032 3.968 12 O -0.133 6.133 13 C -0.488 4.488 14 H 0.118 0.882 15 C -0.223 4.223 16 N -0.559 5.559 17 Si 0.838 3.162 18 H -0.173 1.173 19 H -0.193 1.193 20 H -0.194 1.194 21 H 0.085 0.915 22 H 0.125 0.875 23 H 0.085 0.915 24 H 0.176 0.824 25 H 0.171 0.829 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.139 0.861 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.949 13.192 -0.955 14.502 hybrid contribution 1.391 -1.040 -0.535 1.817 sum -4.558 12.152 -1.489 13.064 Atomic orbital electron populations 1.23263 0.77085 1.04828 1.02138 1.86174 1.23037 1.27232 1.89843 1.18636 0.89139 0.86042 1.07052 1.21185 1.00366 0.90582 1.05425 1.20851 0.93394 0.97335 1.04999 1.19712 0.93935 0.94095 0.99587 1.20433 1.00502 0.91940 0.97242 1.21653 0.99169 0.89328 0.95839 1.58756 1.31396 1.27204 1.20820 1.20906 1.00195 0.90908 1.10574 1.19359 0.89758 0.88024 0.99698 1.84035 1.19739 1.27600 1.81887 1.21868 0.79243 0.95469 1.52221 0.88232 1.26609 1.05966 0.93594 0.96092 1.70233 1.38133 0.98716 1.48867 0.84541 0.73521 0.79638 0.78541 1.17284 1.19294 1.19354 0.91550 0.87485 0.91476 0.82410 0.82867 0.91655 0.88946 0.90652 0.96770 0.84168 0.83625 0.86118 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.35 -15.90 10.28 -79.12 -0.81 -16.72 16 3 C 0.04 1.65 6.70 22.61 0.15 1.80 16 4 C -0.16 -5.36 9.04 22.35 0.20 -5.16 16 5 C -0.15 -4.58 9.69 22.29 0.22 -4.36 16 6 C -0.07 -2.51 5.13 -19.86 -0.10 -2.61 16 7 C -0.06 -1.70 5.60 29.85 0.17 -1.53 16 8 C 0.07 1.73 6.77 86.30 0.58 2.32 16 9 N -0.85 -16.64 9.62 -186.72 -1.80 -18.44 16 10 C -0.21 -9.21 8.81 22.38 0.20 -9.01 16 11 C 0.08 4.30 6.66 22.66 0.15 4.45 16 12 O -0.23 -14.34 9.54 -9.29 -0.09 -14.43 16 13 C -0.41 -24.86 9.49 67.92 0.64 -24.21 16 14 H 0.10 5.49 5.21 -2.91 -0.02 5.47 16 15 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 16 N -0.92 -58.69 13.67 21.61 0.30 -58.40 16 17 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 22 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 23 H 0.07 1.64 7.66 -2.39 -0.02 1.62 16 24 H 0.16 4.07 6.30 -2.91 -0.02 4.05 16 25 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 26 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.09 2.15 8.08 -2.39 -0.02 2.14 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.35 6.09 8.99 -89.69 -0.81 5.28 16 31 H 0.35 5.59 9.08 -89.69 -0.81 4.78 16 32 H 0.12 5.49 5.64 -2.91 -0.02 5.48 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -77.00 284.70 2.94 -74.07 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.48 Total: 25.56 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.79 Total: -37.62 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.50 Total: -76.83 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.90 Total: -31.14 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.00 2.94 -74.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037721758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.908 kcal (2) G-P(sol) polarization free energy of solvation -77.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds