Wall clock time and date at job start Mon Mar 30 2020 03:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35982 * 117.00081 * 2 1 4 4 C 1.38697 * 120.00231 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.00233 * 180.02562 * 4 3 2 6 6 C 1.38698 * 120.00100 * 359.97438 * 5 4 3 7 7 O 1.35979 * 120.00213 * 179.97438 * 6 5 4 8 8 C 1.42905 * 117.00260 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47264 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47192 * 54.99822 * 9 8 7 11 11 N 1.46905 * 109.46980 * 294.99675 * 9 8 7 12 12 C 1.50695 * 109.47139 * 175.00271 * 9 8 7 13 13 H 1.08002 * 120.00212 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00437 * 179.97438 * 12 9 8 15 15 N 1.31524 * 119.99554 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00479 * 179.97438 * 14 12 9 17 17 H 1.48505 * 109.47241 * 59.99792 * 16 14 12 18 18 H 1.48503 * 109.47148 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47236 * 299.99906 * 16 14 12 20 20 C 1.38697 * 119.99913 * 0.26548 * 6 5 4 21 21 C 1.38135 * 119.99788 * 359.48382 * 20 6 5 22 22 H 1.09003 * 109.47383 * 59.99583 * 1 2 3 23 23 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46907 * 300.00082 * 1 2 3 25 25 H 1.08004 * 119.99469 * 359.97438 * 4 3 2 26 26 H 1.07999 * 120.00154 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47103 * 300.00642 * 8 7 6 28 28 H 1.09004 * 109.47054 * 60.00146 * 8 7 6 29 29 H 1.00899 * 110.99949 * 176.04486 * 11 9 8 30 30 H 1.00896 * 111.00242 * 300.00523 * 11 9 8 31 31 H 0.97002 * 119.99496 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.00375 * 179.72029 * 20 6 5 33 33 H 1.08009 * 119.99784 * 180.23597 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4315 1.2842 -0.0005 5 6 4.0585 2.5149 0.0000 6 6 3.3032 3.6782 0.0005 7 8 3.9205 4.8897 0.0016 8 6 3.0806 6.0459 0.0027 9 6 3.9478 7.3063 0.0031 10 1 4.6390 7.2721 -0.8390 11 7 4.7080 7.3772 1.2581 12 6 3.0665 8.5225 -0.1195 13 1 1.9949 8.4080 -0.1911 14 6 3.6279 9.7816 -0.1404 15 7 4.9328 9.9212 -0.0527 16 14 2.5355 11.2891 -0.2931 17 1 1.5929 11.3356 0.8535 18 1 3.3772 12.5126 -0.2913 19 1 1.7679 11.2177 -1.5623 20 6 1.9181 3.6056 0.0061 21 6 1.2910 2.3748 0.0003 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.0196 0.3784 -0.0005 26 1 5.1370 2.5715 0.0000 27 1 2.4512 6.0386 -0.8873 28 1 2.4513 6.0371 0.8927 29 1 5.3367 8.1664 1.2560 30 1 4.0892 7.4099 2.0544 31 1 5.3278 10.8070 -0.0678 32 1 1.3299 4.5113 0.0111 33 1 0.2124 2.3183 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057493902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:55 Heat of formation + Delta-G solvation = -56.917844 kcal Electronic energy + Delta-G solvation = -16175.443697 eV Core-core repulsion = 13394.658591 eV Total energy + Delta-G solvation = -2780.785106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10628 -38.60965 -36.19139 -34.47978 -31.36354 -30.96756 -29.16969 -27.29666 -26.89832 -25.11514 -22.55028 -21.60742 -20.05755 -18.23800 -17.42560 -16.29092 -16.13347 -15.72613 -15.28412 -14.79828 -14.56551 -14.16370 -13.73027 -13.31420 -13.06931 -12.61815 -12.55504 -12.31463 -11.95438 -11.61476 -11.14016 -11.04466 -10.85352 -10.77461 -10.43238 -10.02636 -9.88400 -9.57054 -8.88535 -8.67494 -7.40116 -7.18359 -6.15509 -4.34154 1.44894 1.73625 3.19251 3.25054 3.26327 3.34327 3.93983 3.97343 4.31403 4.87308 4.95408 5.06200 5.07299 5.10391 5.33250 5.43706 5.61534 5.68159 5.98208 5.99481 6.09025 6.25154 6.36821 6.47343 6.65477 6.76149 6.89644 7.44928 7.55273 7.64971 7.98119 8.10921 8.62833 8.91994 9.13017 9.39436 10.82580 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048735 B = 0.004582 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.398778 B = 6109.488910 C = 6578.996274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.069 3.931 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.114 3.886 7 O -0.298 6.298 8 C 0.076 3.924 9 C 0.216 3.784 10 H 0.047 0.953 11 N -0.846 5.846 12 C -0.558 4.558 13 H 0.056 0.944 14 C 0.069 3.931 15 N -0.889 5.889 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.178 4.178 21 C -0.165 4.165 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.354 0.646 30 H 0.309 0.691 31 H 0.268 0.732 32 H 0.131 0.869 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 -14.417 0.444 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.025 3.975 4 C -0.130 4.130 5 C -0.142 4.142 6 C 0.067 3.933 7 O -0.210 6.210 8 C 0.001 3.999 9 C 0.105 3.895 10 H 0.065 0.935 11 N -0.375 5.375 12 C -0.597 4.597 13 H 0.074 0.926 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.197 4.197 21 C -0.184 4.184 22 H 0.070 0.930 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.150 0.850 26 H 0.155 0.845 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.170 0.830 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.280 -15.109 0.214 16.364 hybrid contribution -1.710 2.108 -0.003 2.714 sum -7.990 -13.001 0.211 15.261 Atomic orbital electron populations 1.22961 0.79102 1.03357 1.01147 1.86028 1.20759 1.27074 1.89866 1.18811 0.92288 0.83923 1.02507 1.20154 0.91170 0.97695 1.03933 1.20279 1.00313 0.89130 1.04445 1.19183 0.90862 0.87180 0.96039 1.86292 1.36239 1.11432 1.87068 1.23231 0.93835 0.83698 0.99160 1.18916 0.91883 0.87203 0.91456 0.93507 1.59420 1.23367 1.50955 1.03757 1.21689 0.93860 0.91457 1.52722 0.92602 1.24991 0.95152 0.99181 0.94144 1.69755 1.09575 1.23912 1.49442 0.86518 0.80261 0.81607 0.78791 1.20171 1.21051 1.20085 1.21162 0.93964 0.98279 1.06320 1.20977 0.99571 0.91823 1.06044 0.92973 0.88688 0.92961 0.85024 0.84547 0.93180 0.93522 0.83003 0.88229 0.92251 0.85123 0.85770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.13 10.50 -19.68 -0.21 -4.33 16 3 C 0.07 0.98 6.69 -39.24 -0.26 0.72 16 4 C -0.11 -1.56 9.98 -39.45 -0.39 -1.96 16 5 C -0.12 -1.93 9.98 -39.45 -0.39 -2.32 16 6 C 0.11 2.05 6.69 -39.24 -0.26 1.79 16 7 O -0.30 -6.25 10.09 -19.67 -0.20 -6.45 16 8 C 0.08 1.62 4.27 37.16 0.16 1.78 16 9 C 0.22 5.44 2.99 -68.87 -0.21 5.23 16 10 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 11 N -0.85 -20.73 9.14 -5.66 -0.05 -20.78 16 12 C -0.56 -14.78 8.73 -34.44 -0.30 -15.08 16 13 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.07 1.83 5.38 -17.82 -0.10 1.73 16 15 N -0.89 -24.45 11.54 55.43 0.64 -23.81 16 16 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 C -0.18 -2.88 9.03 -39.45 -0.36 -3.24 16 21 C -0.17 -2.33 9.03 -39.45 -0.36 -2.68 16 22 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 23 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 26 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 27 H 0.05 1.02 7.67 -51.93 -0.40 0.62 16 28 H 0.05 0.96 7.65 -51.93 -0.40 0.56 16 29 H 0.35 9.22 7.08 -39.29 -0.28 8.94 16 30 H 0.31 7.20 8.99 -39.29 -0.35 6.85 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 33 H 0.12 1.42 6.29 -52.48 -0.33 1.09 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -28.66 282.43 -6.17 -34.84 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -4.11 Total: 13.55 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.48 Total: -12.77 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.59 Total: -44.60 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.41 Total: -10.79 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.66 -6.17 -34.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057493902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.082 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds