Wall clock time and date at job start Mon Mar 30 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 O 1.42906 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.36034 * 116.99708 * 179.97438 * 4 3 2 6 6 C 1.36634 * 120.38529 * 0.02562 * 5 4 3 7 7 C 1.40268 * 119.24737 * 179.97438 * 6 5 4 8 8 C 1.35229 * 120.01966 * 0.02562 * 7 6 5 9 9 N 1.35951 * 120.78476 * 359.95239 * 8 7 6 10 10 C 1.46502 * 119.61770 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47504 * 89.99967 * 10 9 8 12 12 H 1.08001 * 120.00075 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00427 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00427 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99778 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46750 * 89.99883 * 15 13 11 17 17 H 1.48501 * 109.47201 * 209.99921 * 15 13 11 18 18 H 1.48495 * 109.47141 * 330.00477 * 15 13 11 19 19 C 1.34673 * 120.76354 * 359.77944 * 9 8 7 20 20 O 1.22073 * 120.02118 * 180.25988 * 19 9 8 21 21 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 25 25 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 27 27 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 28 28 H 1.07996 * 120.37710 * 359.97438 * 6 5 4 29 29 H 1.08009 * 119.98923 * 179.97438 * 7 6 5 30 30 H 1.07999 * 119.60647 * 179.97438 * 8 7 6 31 31 H 1.09003 * 109.47157 * 209.99878 * 10 9 8 32 32 H 1.09005 * 109.47032 * 329.99710 * 10 9 8 33 33 H 0.97004 * 120.00243 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0864 2.6548 0.0001 6 6 3.3499 3.8056 -0.0003 7 6 4.0113 5.0425 -0.0003 8 6 5.3629 5.0870 -0.0002 9 7 6.0968 3.9426 0.0007 10 6 7.5597 4.0206 0.0012 11 6 8.0608 4.0482 1.4221 12 1 7.3597 4.0116 2.2428 13 6 9.4143 4.1200 1.6746 14 7 9.8516 4.1445 2.9146 15 14 10.6272 4.1824 0.2552 16 1 10.8746 5.5972 -0.1225 17 1 11.9055 3.5494 0.6681 18 1 10.0654 3.4505 -0.9084 19 6 5.4945 2.7381 0.0060 20 8 6.1667 1.7191 0.0116 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6765 1.9564 -0.8900 27 1 1.6764 1.9564 0.8900 28 1 2.2708 3.7633 -0.0008 29 1 3.4409 5.9597 -0.0010 30 1 5.8652 6.0431 -0.0006 31 1 7.9701 3.1510 -0.5120 32 1 7.8753 4.9285 -0.5130 33 1 10.8040 4.1946 3.0922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057792479.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:43 Heat of formation + Delta-G solvation = -68.751875 kcal Electronic energy + Delta-G solvation = -16534.412461 eV Core-core repulsion = 13753.114193 eV Total energy + Delta-G solvation = -2781.298268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.31554 -39.77821 -37.88213 -35.75587 -34.79849 -33.94908 -30.28904 -30.21243 -27.63990 -25.54583 -24.04848 -23.36188 -22.10133 -19.30875 -19.26664 -18.54500 -17.73335 -17.38241 -16.84337 -16.43164 -15.80069 -15.52245 -15.30261 -14.70385 -14.61956 -14.02685 -13.79786 -13.48818 -13.22396 -12.98760 -12.81585 -12.72110 -12.56462 -12.43837 -11.98825 -11.87904 -11.83847 -11.54168 -10.92659 -10.89078 -10.41751 -8.45555 -8.41416 -6.51858 0.02579 0.95268 1.31242 1.35660 1.46679 1.56981 2.26720 2.60814 2.74592 2.92156 3.69118 3.95716 3.96574 4.03777 4.13738 4.22317 4.35432 4.45430 4.52788 4.57665 4.69871 4.82404 4.96989 5.11584 5.13937 5.18685 5.25380 5.26845 5.36170 5.70507 6.07598 6.14039 6.48446 6.49383 7.07377 7.16542 8.75007 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040917 B = 0.005661 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.154091 B = 4944.745631 C = 5238.144851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.050 3.950 4 O -0.331 6.331 5 C -0.032 4.032 6 C -0.104 4.104 7 C -0.200 4.200 8 C 0.099 3.901 9 N -0.469 5.469 10 C 0.203 3.797 11 C -0.551 4.551 12 H 0.027 0.973 13 C 0.019 3.981 14 N -0.938 5.938 15 Si 0.951 3.049 16 H -0.239 1.239 17 H -0.280 1.280 18 H -0.256 1.256 19 C 0.491 3.509 20 O -0.604 6.604 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.173 0.827 29 H 0.193 0.807 30 H 0.190 0.810 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.256 2.945 -9.445 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.025 4.025 4 O -0.246 6.246 5 C -0.080 4.080 6 C -0.127 4.127 7 C -0.222 4.222 8 C -0.028 4.028 9 N -0.178 5.178 10 C 0.082 3.918 11 C -0.589 4.589 12 H 0.046 0.954 13 C -0.180 4.180 14 N -0.577 5.577 15 Si 0.772 3.228 16 H -0.163 1.163 17 H -0.206 1.206 18 H -0.180 1.180 19 C 0.292 3.708 20 O -0.491 6.491 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.191 0.809 29 H 0.210 0.790 30 H 0.207 0.793 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.561 2.134 -9.329 19.999 hybrid contribution 0.909 -0.320 0.218 0.988 sum -16.652 1.813 -9.110 19.068 Atomic orbital electron populations 1.21649 0.91696 1.03287 1.03082 1.21526 0.97859 0.94074 1.02829 1.23223 0.76547 1.00066 1.02644 1.86065 1.23041 1.25921 1.89531 1.19475 0.90791 0.87164 1.10608 1.21800 1.01950 0.90646 0.98254 1.20864 0.91927 0.99327 1.10072 1.22637 0.93690 0.90700 0.95753 1.45393 1.10044 1.06254 1.56070 1.20002 0.74856 0.99601 0.97327 1.21260 0.93230 1.53222 0.91168 0.95447 1.25843 1.00081 0.93064 0.99036 1.70028 1.15824 1.50333 1.21483 0.85676 0.77722 0.80556 0.78843 1.16292 1.20567 1.17966 1.16864 0.88631 0.83577 0.81685 1.90882 1.67487 1.35039 1.55680 0.91033 0.91571 0.91181 0.91678 0.92227 0.90072 0.90847 0.80933 0.78976 0.79338 0.94733 0.89909 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.13 -2.57 6.30 30.60 0.19 -2.38 16 3 C 0.05 1.16 4.75 71.98 0.34 1.51 16 4 O -0.33 -12.49 9.94 -78.11 -0.78 -13.27 16 5 C -0.03 -1.24 6.71 22.58 0.15 -1.09 16 6 C -0.10 -2.79 9.09 22.39 0.20 -2.58 16 7 C -0.20 -4.78 10.00 22.07 0.22 -4.56 16 8 C 0.10 3.07 10.28 83.36 0.86 3.93 16 9 N -0.47 -20.59 2.57 -654.43 -1.68 -22.27 16 10 C 0.20 9.90 4.15 85.63 0.36 10.26 16 11 C -0.55 -32.61 9.94 25.60 0.25 -32.36 16 12 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 13 C 0.02 1.12 5.47 84.65 0.46 1.59 16 14 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 15 Si 0.95 43.02 27.47 68.60 1.88 44.90 16 16 H -0.24 -9.57 7.11 99.48 0.71 -8.87 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.26 -11.22 6.54 99.48 0.65 -10.57 16 19 C 0.49 24.05 7.42 84.95 0.63 24.68 16 20 O -0.60 -36.05 16.44 10.28 0.17 -35.88 16 21 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.49 7.68 -2.39 -0.02 1.47 16 27 H 0.07 1.47 7.68 -2.39 -0.02 1.45 16 28 H 0.17 3.04 6.33 -2.91 -0.02 3.02 16 29 H 0.19 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.19 4.56 8.04 -2.91 -0.02 4.54 16 31 H 0.03 1.85 6.45 -2.39 -0.02 1.83 16 32 H 0.08 3.36 7.44 -2.38 -0.02 3.34 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -83.75 283.92 5.31 -78.44 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 1.04 Total: 8.69 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 4.38 Total: -2.11 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.39 Total: -80.77 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.61 Total: -49.15 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -83.75 5.31 -78.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792479.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.687 kcal (2) G-P(sol) polarization free energy of solvation -83.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds