Wall clock time and date at job start Mon Mar 30 2020 03:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47415 * 2 1 4 4 C 1.52992 * 109.47310 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47170 * 180.02562 * 4 3 2 6 6 C 1.36023 * 117.00192 * 179.97438 * 5 4 3 7 7 C 1.36689 * 120.36996 * 359.97438 * 6 5 4 8 8 C 1.40376 * 119.26815 * 180.02562 * 7 6 5 9 9 C 1.35211 * 120.00692 * 359.97438 * 8 7 6 10 10 N 1.36267 * 120.75769 * 0.02816 * 9 8 7 11 11 C 1.37002 * 119.63263 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99854 * 150.80946 * 11 10 9 13 13 C 1.39139 * 119.99791 * 330.80402 * 11 10 9 14 14 N 1.31205 * 119.99860 * 342.67536 * 13 11 10 15 15 Si 1.86793 * 120.00012 * 162.67624 * 13 11 10 16 16 H 1.48494 * 109.47479 * 59.99914 * 15 13 11 17 17 H 1.48500 * 109.47347 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47073 * 299.99947 * 15 13 11 19 19 C 1.34680 * 120.74046 * 359.65238 * 10 9 8 20 20 O 1.22027 * 120.01793 * 180.30288 * 19 10 9 21 21 H 1.09000 * 109.47340 * 59.99141 * 1 2 3 22 22 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46994 * 299.99692 * 1 2 3 24 24 H 1.09007 * 109.46994 * 240.00308 * 2 1 3 25 25 H 1.09000 * 109.47387 * 120.00072 * 2 1 3 26 26 H 1.08998 * 109.46796 * 59.99936 * 3 2 1 27 27 H 1.09000 * 109.46902 * 300.00369 * 3 2 1 28 28 H 1.08998 * 109.47554 * 60.00020 * 4 3 2 29 29 H 1.09007 * 109.46988 * 300.00233 * 4 3 2 30 30 H 1.07999 * 120.36601 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.99476 * 179.97438 * 8 7 6 32 32 H 1.07996 * 119.62329 * 179.97438 * 9 8 7 33 33 H 0.97007 * 120.00253 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7897 0.0000 6 6 5.3948 2.9680 0.0000 7 6 6.2344 1.8894 0.0001 8 6 7.6223 2.1000 0.0007 9 6 8.1151 3.3591 0.0007 10 7 7.2787 4.4349 0.0007 11 6 7.8030 5.7006 0.0013 12 1 7.2554 6.5121 -0.4548 13 6 9.0408 5.9406 0.5896 14 7 9.5496 5.0676 1.4266 15 14 9.9783 7.5055 0.1879 16 1 9.1626 8.6844 0.5750 17 1 11.2596 7.5215 0.9384 18 1 10.2583 7.5544 -1.2697 19 6 5.9423 4.2678 -0.0063 20 8 5.2055 5.2405 -0.0118 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 3.9330 0.9288 -0.8908 29 1 3.9336 0.9285 0.8891 30 1 5.8345 0.8862 -0.0004 31 1 8.2965 1.2563 0.0012 32 1 9.1839 3.5141 0.0016 33 1 10.4125 5.2350 1.8371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057793052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:42 Heat of formation + Delta-G solvation = -74.239521 kcal Electronic energy + Delta-G solvation = -16487.959222 eV Core-core repulsion = 13706.422992 eV Total energy + Delta-G solvation = -2781.536230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06519 -39.65570 -37.55754 -36.18632 -35.40247 -33.24840 -30.68789 -29.44078 -27.86937 -25.34821 -23.66386 -23.35898 -21.92045 -20.47784 -18.37442 -18.27420 -17.54192 -17.32901 -16.84673 -16.21792 -15.86640 -15.30509 -15.23171 -15.02882 -14.40225 -13.87292 -13.56906 -13.35934 -13.17074 -13.03850 -12.74631 -12.53537 -12.38769 -12.13174 -12.00023 -11.92885 -11.83349 -11.47754 -11.18181 -10.61783 -10.37050 -8.86610 -8.26619 -6.53394 0.32953 1.15817 1.36409 1.43660 1.50362 1.95603 2.28718 2.49788 3.07282 3.23480 3.90512 3.93894 4.10895 4.18238 4.29939 4.38179 4.40901 4.49173 4.63637 4.68695 4.87021 4.92443 5.03951 5.11771 5.22308 5.33243 5.36034 5.42518 5.45542 5.55924 5.79354 6.21953 6.53802 6.73974 6.98510 7.65153 8.24898 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.058424 B = 0.005144 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.136398 B = 5441.571799 C = 5806.364615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.116 4.116 4 C 0.052 3.948 5 O -0.333 6.333 6 C -0.049 4.049 7 C -0.125 4.125 8 C -0.227 4.227 9 C 0.100 3.900 10 N -0.302 5.302 11 C -0.388 4.388 12 H 0.091 0.909 13 C 0.023 3.977 14 N -0.858 5.858 15 Si 1.012 2.988 16 H -0.272 1.272 17 H -0.254 1.254 18 H -0.254 1.254 19 C 0.429 3.571 20 O -0.642 6.642 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 -11.681 -2.163 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.154 4.154 4 C -0.023 4.023 5 O -0.248 6.248 6 C -0.098 4.098 7 C -0.148 4.148 8 C -0.249 4.249 9 C -0.033 4.033 10 N 0.005 4.995 11 C -0.515 4.515 12 H 0.109 0.891 13 C -0.186 4.186 14 N -0.490 5.490 15 Si 0.831 3.169 16 H -0.197 1.197 17 H -0.178 1.178 18 H -0.178 1.178 19 C 0.237 3.763 20 O -0.536 6.536 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.179 0.821 31 H 0.189 0.811 32 H 0.179 0.821 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.097 -10.976 -2.011 11.887 hybrid contribution 0.319 0.770 0.156 0.848 sum -3.777 -10.206 -1.855 11.039 Atomic orbital electron populations 1.21759 0.94638 1.02540 1.01926 1.21411 0.96788 0.93625 1.03256 1.21592 0.91685 0.99342 1.02764 1.23068 0.96099 0.81148 1.01965 1.85996 1.17857 1.30647 1.90278 1.19325 0.84329 0.93175 1.12966 1.21476 0.93649 0.98013 1.01704 1.20570 0.94911 0.95893 1.13476 1.22288 0.97705 0.86119 0.97166 1.41423 1.04983 1.08094 1.45002 1.20169 1.04351 0.86379 1.40637 0.89071 1.26564 0.96699 1.03674 0.91712 1.69823 1.19219 1.38235 1.21678 0.84750 0.77071 0.75245 0.79832 1.19700 1.17787 1.17818 1.16975 0.82798 0.89695 0.86851 1.90691 1.58859 1.43576 1.60492 0.92767 0.91042 0.92877 0.90645 0.90821 0.92062 0.91839 0.91072 0.91457 0.82094 0.81072 0.82064 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.65 16 2 C -0.11 -2.01 5.93 30.59 0.18 -1.83 16 3 C -0.12 -2.98 5.58 30.59 0.17 -2.81 16 4 C 0.05 1.59 4.75 71.98 0.34 1.94 16 5 O -0.33 -15.29 9.94 -77.95 -0.77 -16.06 16 6 C -0.05 -2.43 6.71 22.60 0.15 -2.28 16 7 C -0.12 -4.84 9.10 22.43 0.20 -4.64 16 8 C -0.23 -8.76 10.01 22.09 0.22 -8.54 16 9 C 0.10 4.73 9.06 83.31 0.75 5.48 16 10 N -0.30 -17.02 2.74 -476.12 -1.30 -18.33 16 11 C -0.39 -22.31 9.06 84.10 0.76 -21.55 16 12 H 0.09 5.54 7.54 -2.91 -0.02 5.52 16 13 C 0.02 1.12 4.99 85.00 0.42 1.55 16 14 N -0.86 -42.60 11.18 21.69 0.24 -42.36 16 15 Si 1.01 38.63 29.59 68.60 2.03 40.66 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 18 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 19 C 0.43 25.54 7.38 84.95 0.63 26.17 16 20 O -0.64 -43.53 16.62 10.46 0.17 -43.36 16 21 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 29 H 0.07 1.84 7.68 -2.38 -0.02 1.83 16 30 H 0.16 4.68 6.32 -2.91 -0.02 4.66 16 31 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16 32 H 0.16 7.41 6.21 -2.91 -0.02 7.39 16 33 H 0.30 13.16 8.30 -92.70 -0.77 12.39 16 Total: -1.00 -73.40 282.66 6.02 -67.38 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.10 Total: 20.24 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.55 Total: -8.17 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -1.06 Total: -60.69 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: -0.60 Total: -59.42 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -73.40 6.02 -67.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.860 kcal (2) G-P(sol) polarization free energy of solvation -73.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds