Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09004 * 109.46991 * 305.36153 * 3 2 1 5 5 C 1.50698 * 109.47055 * 185.36228 * 3 2 1 6 6 H 1.08001 * 120.00188 * 333.96007 * 5 3 2 7 7 C 1.37880 * 119.99565 * 153.96380 * 5 3 2 8 8 N 1.31508 * 120.00409 * 6.24098 * 7 5 3 9 9 Si 1.86805 * 119.99694 * 186.24161 * 7 5 3 10 10 H 1.48497 * 109.47115 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47016 * 299.99980 * 9 7 5 12 12 H 1.48505 * 109.47149 * 59.99844 * 9 7 5 13 13 N 1.46499 * 109.47060 * 65.36040 * 3 2 1 14 14 C 1.34519 * 125.20656 * 59.69675 * 13 3 2 15 15 O 1.21398 * 125.79105 * 359.97438 * 14 13 3 16 16 C 1.47962 * 108.41259 * 179.85280 * 14 13 3 17 17 C 1.50693 * 126.60393 * 180.17540 * 16 14 13 18 18 C 1.34326 * 106.79366 * 0.40447 * 16 14 13 19 19 C 1.50697 * 126.60499 * 179.73874 * 18 16 14 20 20 C 1.34518 * 125.20881 * 240.00298 * 13 3 2 21 21 O 1.21408 * 125.79337 * 0.02562 * 20 13 3 22 22 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 23 23 H 1.09000 * 109.46865 * 59.99923 * 1 2 3 24 24 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 26 26 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 27 27 H 0.97002 * 119.99994 * 354.61898 * 8 7 5 28 28 H 1.09009 * 109.47208 * 270.27812 * 17 16 14 29 29 H 1.09008 * 109.47637 * 30.27729 * 17 16 14 30 30 H 1.09003 * 109.47905 * 150.28051 * 17 16 14 31 31 H 1.08992 * 109.47328 * 180.02562 * 19 18 16 32 32 H 1.09000 * 109.47357 * 300.00722 * 19 18 16 33 33 H 1.09004 * 109.47026 * 60.00338 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 -0.8381 5 6 3.5411 1.4445 -0.1328 6 1 4.1141 0.5925 0.2023 7 6 4.1831 2.5342 -0.6819 8 7 3.5013 3.6195 -0.9765 9 14 6.0214 2.4689 -1.0075 10 1 6.4657 3.7572 -1.5974 11 1 6.7422 2.2337 0.2694 12 1 6.3175 1.3634 -1.9539 13 7 1.6599 2.0949 1.2554 14 6 2.0249 1.6854 2.4837 15 8 2.7184 0.7209 2.7336 16 6 1.4401 2.6118 3.4782 17 6 1.5931 2.5363 4.9754 18 6 0.7423 3.5302 2.7897 19 6 -0.0388 4.6830 3.3659 20 6 0.8877 3.1916 1.3568 21 8 0.3934 3.8002 0.4297 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5361 3.6268 -0.8809 28 1 0.7933 1.9238 5.3920 29 1 2.5572 2.0903 5.2202 30 1 1.5395 3.5399 5.3974 31 1 -0.4968 5.2519 2.5570 32 1 -0.8169 4.3006 4.0266 33 1 0.6321 5.3300 3.9311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070800716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = -52.754584 kcal Electronic energy + Delta-G solvation = -17636.969453 eV Core-core repulsion = 14856.364880 eV Total energy + Delta-G solvation = -2780.604574 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36301 -37.67660 -35.70227 -35.34619 -32.65866 -32.04020 -29.66294 -27.70232 -25.57505 -23.48386 -23.13646 -20.98621 -19.34369 -18.89322 -17.28076 -15.90963 -15.62043 -14.99631 -14.52634 -13.84800 -13.66166 -13.43624 -13.27014 -13.07993 -13.00930 -12.94810 -12.65431 -12.52692 -12.13376 -12.07952 -11.31095 -11.00436 -10.84058 -10.55094 -10.23937 -10.07566 -9.68534 -9.45588 -9.04815 -8.97747 -8.65426 -8.12563 -6.57752 -4.36943 0.74250 3.20692 3.30399 3.37777 3.53246 3.58409 3.84463 4.30944 4.40983 4.77243 5.21215 5.22969 5.41961 5.57720 5.68481 5.74088 5.76564 5.78565 5.81887 5.96083 6.01066 6.07059 6.42017 6.48276 6.49902 6.60585 6.63009 7.01540 7.20314 7.65496 7.99972 8.13183 8.33632 8.64964 8.70850 9.39773 10.80694 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.010356 C = 0.009757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.113222 B = 2703.166620 C = 2869.034387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.237 3.763 4 H 0.068 0.932 5 C -0.594 4.594 6 H 0.063 0.937 7 C 0.028 3.972 8 N -0.886 5.886 9 Si 1.070 2.930 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.559 5.559 14 C 0.552 3.448 15 O -0.466 6.466 16 C -0.144 4.144 17 C -0.089 4.089 18 C -0.143 4.143 19 C -0.091 4.091 20 C 0.540 3.460 21 O -0.477 6.477 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.281 0.719 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -0.773 9.005 10.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.143 3.857 4 H 0.086 0.914 5 C -0.633 4.633 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.520 5.520 9 Si 0.897 3.103 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.299 5.299 14 C 0.340 3.660 15 O -0.339 6.339 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.148 4.148 20 C 0.328 3.672 21 O -0.351 6.351 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.451 -0.128 7.966 9.126 hybrid contribution -1.255 -0.816 0.543 1.593 sum -5.706 -0.944 8.509 10.289 Atomic orbital electron populations 1.21813 0.97644 1.00224 1.00957 1.21798 0.93585 0.98310 1.02502 1.19404 0.96413 0.89272 0.80656 0.91441 1.22178 0.90723 1.06466 1.43921 0.91830 1.26125 1.07455 0.91711 0.92868 1.70739 1.10586 1.27050 1.43637 0.83533 0.73652 0.76258 0.76854 1.20559 1.21155 1.20862 1.48804 1.44533 1.26589 1.10011 1.18996 0.79347 0.84207 0.83466 1.90635 1.33267 1.26664 1.83297 1.23234 0.97778 0.96329 0.97482 1.20357 1.03360 1.02766 0.88110 1.23198 0.99040 0.97952 0.94512 1.20366 0.98794 0.94486 1.01125 1.19317 0.77817 0.80940 0.89132 1.90681 1.46496 1.52982 1.44930 0.94133 0.93112 0.93555 0.91109 0.91678 0.90625 0.90285 0.90343 0.90736 0.90416 0.90477 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.80 37.16 0.36 -2.42 16 2 C -0.12 -2.70 5.35 -26.73 -0.14 -2.85 16 3 C 0.24 6.03 1.79 -69.08 -0.12 5.90 16 4 H 0.07 1.87 6.41 -51.93 -0.33 1.53 16 5 C -0.59 -16.61 7.95 -34.44 -0.27 -16.88 16 6 H 0.06 1.81 7.82 -52.49 -0.41 1.40 16 7 C 0.03 0.79 5.45 -17.82 -0.10 0.69 16 8 N -0.89 -26.76 13.63 55.43 0.76 -26.00 16 9 Si 1.07 25.08 29.91 -169.99 -5.08 19.99 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.56 -13.31 1.99 -111.66 -0.22 -13.53 16 14 C 0.55 12.32 7.39 -12.39 -0.09 12.23 16 15 O -0.47 -11.28 16.22 5.46 0.09 -11.19 16 16 C -0.14 -2.50 6.38 -102.02 -0.65 -3.15 16 17 C -0.09 -1.11 10.22 36.00 0.37 -0.74 16 18 C -0.14 -2.50 6.38 -102.02 -0.65 -3.15 16 19 C -0.09 -1.15 10.01 36.00 0.36 -0.79 16 20 C 0.54 12.18 7.77 -12.39 -0.10 12.08 16 21 O -0.48 -11.81 16.71 5.45 0.09 -11.72 16 22 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.06 1.47 6.73 -51.93 -0.35 1.13 16 27 H 0.28 8.61 5.69 -40.82 -0.23 8.37 16 28 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 285.75 15.07 4.31 4.31 Total: -1.00 -32.54 285.75 -5.42 -37.95 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.32 Total: -0.74 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.03 Total: 0.92 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.53 Total: -39.53 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.18 Total: -22.90 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.54 -5.42 -37.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.802 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds