Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09004 * 109.46991 * 305.36153 * 3 2 1 5 5 C 1.50698 * 109.47055 * 185.36228 * 3 2 1 6 6 H 1.08001 * 120.00188 * 333.96007 * 5 3 2 7 7 C 1.37880 * 119.99565 * 153.96380 * 5 3 2 8 8 N 1.31508 * 120.00409 * 6.24098 * 7 5 3 9 9 Si 1.86805 * 119.99694 * 186.24161 * 7 5 3 10 10 H 1.48497 * 109.47115 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47016 * 299.99980 * 9 7 5 12 12 H 1.48505 * 109.47149 * 59.99844 * 9 7 5 13 13 N 1.46499 * 109.47060 * 65.36040 * 3 2 1 14 14 C 1.34519 * 125.20656 * 59.69675 * 13 3 2 15 15 O 1.21398 * 125.79105 * 359.97438 * 14 13 3 16 16 C 1.47962 * 108.41259 * 179.85280 * 14 13 3 17 17 C 1.50693 * 126.60393 * 180.17540 * 16 14 13 18 18 C 1.34326 * 106.79366 * 0.40447 * 16 14 13 19 19 C 1.50697 * 126.60499 * 179.73874 * 18 16 14 20 20 C 1.34518 * 125.20881 * 240.00298 * 13 3 2 21 21 O 1.21408 * 125.79337 * 0.02562 * 20 13 3 22 22 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 23 23 H 1.09000 * 109.46865 * 59.99923 * 1 2 3 24 24 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 26 26 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 27 27 H 0.97002 * 119.99994 * 354.61898 * 8 7 5 28 28 H 1.09009 * 109.47208 * 270.27812 * 17 16 14 29 29 H 1.09008 * 109.47637 * 30.27729 * 17 16 14 30 30 H 1.09003 * 109.47905 * 150.28051 * 17 16 14 31 31 H 1.08992 * 109.47328 * 180.02562 * 19 18 16 32 32 H 1.09000 * 109.47357 * 300.00722 * 19 18 16 33 33 H 1.09004 * 109.47026 * 60.00338 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 -0.8381 5 6 3.5411 1.4445 -0.1328 6 1 4.1141 0.5925 0.2023 7 6 4.1831 2.5342 -0.6819 8 7 3.5013 3.6195 -0.9765 9 14 6.0214 2.4689 -1.0075 10 1 6.4657 3.7572 -1.5974 11 1 6.7422 2.2337 0.2694 12 1 6.3175 1.3634 -1.9539 13 7 1.6599 2.0949 1.2554 14 6 2.0249 1.6854 2.4837 15 8 2.7184 0.7209 2.7336 16 6 1.4401 2.6118 3.4782 17 6 1.5931 2.5363 4.9754 18 6 0.7423 3.5302 2.7897 19 6 -0.0388 4.6830 3.3659 20 6 0.8877 3.1916 1.3568 21 8 0.3934 3.8002 0.4297 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.5361 3.6268 -0.8809 28 1 0.7933 1.9238 5.3920 29 1 2.5572 2.0903 5.2202 30 1 1.5395 3.5399 5.3974 31 1 -0.4968 5.2519 2.5570 32 1 -0.8169 4.3006 4.0266 33 1 0.6321 5.3300 3.9311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070800716.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = -73.698353 kcal Electronic energy + Delta-G solvation = -17637.877643 eV Core-core repulsion = 14856.364880 eV Total energy + Delta-G solvation = -2781.512764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.09643 -39.50853 -37.44610 -37.14645 -34.57399 -33.75098 -30.74666 -29.41823 -27.18450 -25.18907 -25.06802 -22.71094 -20.95301 -20.64741 -19.30437 -17.70251 -17.41005 -16.71289 -16.23666 -15.76492 -15.38450 -15.08685 -14.95051 -14.67083 -14.46948 -14.30138 -14.24529 -13.50545 -13.36152 -13.14763 -13.08619 -12.80882 -12.67822 -12.24344 -12.09116 -11.94519 -11.49215 -11.34905 -10.92489 -10.76672 -10.39488 -9.99709 -8.82734 -6.63008 -0.81666 1.45358 1.46700 1.62224 1.73323 1.76519 2.07173 2.44183 2.89445 3.05998 3.31959 3.99145 4.04147 4.10425 4.14340 4.26107 4.56171 4.59830 4.74043 4.76788 4.81910 4.86213 4.86475 4.90399 5.01053 5.10280 5.22659 5.31302 5.35955 5.64641 5.92856 6.18235 6.34726 6.44613 6.87714 7.22044 8.55030 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021548 B = 0.010356 C = 0.009757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.113222 B = 2703.166620 C = 2869.034387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.237 3.763 4 H 0.035 0.965 5 C -0.608 4.608 6 H 0.052 0.948 7 C -0.019 4.019 8 N -0.917 5.917 9 Si 1.115 2.885 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.261 1.261 13 N -0.575 5.575 14 C 0.536 3.464 15 O -0.493 6.493 16 C -0.130 4.130 17 C -0.085 4.085 18 C -0.135 4.135 19 C -0.086 4.086 20 C 0.523 3.477 21 O -0.510 6.510 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.266 0.734 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -0.662 11.405 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C 0.141 3.859 4 H 0.053 0.947 5 C -0.646 4.646 6 H 0.070 0.930 7 C -0.221 4.221 8 N -0.552 5.552 9 Si 0.935 3.065 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.186 1.186 13 N -0.315 5.315 14 C 0.326 3.674 15 O -0.368 6.368 16 C -0.134 4.134 17 C -0.141 4.141 18 C -0.139 4.139 19 C -0.142 4.142 20 C 0.314 3.686 21 O -0.386 6.386 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.952 -0.028 10.397 11.517 hybrid contribution -1.166 -0.924 -0.213 1.503 sum -6.119 -0.952 10.184 11.919 Atomic orbital electron populations 1.21709 0.94979 1.02294 1.00567 1.21712 0.95944 0.95839 1.02110 1.19178 0.95237 0.90842 0.80672 0.94709 1.22362 0.92122 1.06047 1.44115 0.93005 1.27510 1.11265 0.91190 0.92143 1.70862 1.09814 1.28205 1.46349 0.82989 0.69011 0.76916 0.77596 1.20469 1.20072 1.18601 1.48378 1.45368 1.27466 1.10294 1.19866 0.78892 0.84602 0.84012 1.90605 1.34471 1.28010 1.83689 1.23415 0.96766 0.94120 0.99109 1.20584 1.04042 1.05537 0.83941 1.23371 1.00158 0.99806 0.90574 1.20577 0.99536 0.92713 1.01407 1.20206 0.76867 0.79978 0.91565 1.90649 1.47675 1.53609 1.46704 0.94647 0.93346 0.90171 0.90831 0.92588 0.92238 0.87486 0.90890 0.87107 0.91469 0.86611 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.80 71.98 0.71 -4.42 16 2 C -0.12 -5.26 5.35 30.59 0.16 -5.10 16 3 C 0.24 12.57 1.79 44.25 0.08 12.65 16 4 H 0.03 2.05 6.41 -2.39 -0.02 2.03 16 5 C -0.61 -35.14 7.95 25.60 0.20 -34.94 16 6 H 0.05 3.05 7.82 -2.91 -0.02 3.02 16 7 C -0.02 -1.09 5.45 84.66 0.46 -0.63 16 8 N -0.92 -57.38 13.63 21.45 0.29 -57.09 16 9 Si 1.11 51.11 29.91 68.60 2.05 53.17 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 13 N -0.57 -28.04 1.99 -744.14 -1.48 -29.52 16 14 C 0.54 23.91 7.39 86.86 0.64 24.55 16 15 O -0.49 -24.07 16.22 -3.39 -0.06 -24.12 16 16 C -0.13 -4.20 6.38 -18.18 -0.12 -4.32 16 17 C -0.08 -1.72 10.22 71.23 0.73 -1.00 16 18 C -0.13 -4.46 6.38 -18.18 -0.12 -4.57 16 19 C -0.09 -1.84 10.01 71.23 0.71 -1.13 16 20 C 0.52 23.97 7.77 86.86 0.68 24.64 16 21 O -0.51 -26.19 16.71 -3.43 -0.06 -26.25 16 22 H 0.03 1.32 7.76 -2.39 -0.02 1.30 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.06 2.58 6.73 -2.38 -0.02 2.57 16 27 H 0.27 17.15 5.69 -92.71 -0.53 16.62 16 28 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.11 1.52 7.94 -2.39 -0.02 1.50 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -75.35 285.75 6.24 -69.12 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.35 Total: 8.96 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.14 Total: 5.73 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.19 Total: -86.61 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.11 Total: -50.37 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.17 kcal Total: -75.35 6.24 -69.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070800716.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.582 kcal (2) G-P(sol) polarization free energy of solvation -75.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds