Wall clock time and date at job start Mon Mar 30 2020 03:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35983 * 116.99869 * 2 1 4 4 C 1.38719 * 120.00233 * 359.97438 * 3 2 1 5 5 C 1.38104 * 120.00180 * 180.02562 * 4 3 2 6 6 C 1.38719 * 120.00169 * 0.02562 * 5 4 3 7 7 O 1.35980 * 120.00415 * 180.02562 * 6 5 4 8 8 C 1.42908 * 116.99735 * 359.97438 * 7 6 5 9 9 C 1.38682 * 119.99550 * 359.97438 * 6 5 4 10 10 C 1.50700 * 119.99651 * 180.02562 * 9 6 5 11 11 H 1.08994 * 109.47551 * 39.99511 * 10 9 6 12 12 N 1.46900 * 109.47395 * 159.99973 * 10 9 6 13 13 C 1.50702 * 109.46869 * 279.99566 * 10 9 6 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.38147 * 120.00246 * 0.27553 * 9 6 5 22 22 H 1.08997 * 109.46955 * 60.00224 * 1 2 3 23 23 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47314 * 300.00087 * 1 2 3 25 25 H 1.08000 * 119.99433 * 359.97438 * 4 3 2 26 26 H 1.07998 * 120.00324 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.46789 * 299.99672 * 8 7 6 28 28 H 1.09002 * 109.46702 * 59.99895 * 8 7 6 29 29 H 1.08996 * 109.46506 * 179.97438 * 8 7 6 30 30 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 31 31 H 1.00902 * 111.00206 * 183.95155 * 12 10 9 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 33 33 H 1.08003 * 120.00167 * 179.69965 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 -0.0005 5 6 1.9178 3.6056 -0.0011 6 6 3.3031 3.6782 -0.0016 7 8 3.9205 4.8898 -0.0016 8 6 3.0805 6.0459 -0.0016 9 6 4.0584 2.5151 -0.0011 10 6 5.5633 2.5940 -0.0011 11 1 5.8850 3.3995 0.6590 12 7 6.1205 1.3202 0.4732 13 6 6.0520 2.8660 -1.4005 14 1 5.3437 2.9716 -2.2089 15 6 7.4032 2.9862 -1.6477 16 7 8.2657 2.8580 -0.6632 17 14 8.0085 3.3309 -3.3809 18 1 6.8466 3.4311 -4.3002 19 1 8.7631 4.6099 -3.3964 20 1 8.8970 2.2266 -3.8238 21 6 3.4312 1.2842 -0.0058 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2123 2.3184 -0.0014 26 1 1.3296 4.5113 -0.0019 27 1 2.4513 6.0378 -0.8916 28 1 2.4512 6.0378 0.8884 29 1 3.6983 6.9438 -0.0011 30 1 5.8365 0.5571 -0.1227 31 1 7.1259 1.3692 0.5437 32 1 9.2163 2.9423 -0.8371 33 1 4.0194 0.3784 -0.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071510022.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:08 Heat of formation + Delta-G solvation = -69.621473 kcal Electronic energy + Delta-G solvation = -16965.551704 eV Core-core repulsion = 14184.215727 eV Total energy + Delta-G solvation = -2781.335977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31437 -39.74209 -37.72335 -36.10137 -33.54037 -31.15395 -30.58132 -28.07488 -27.88304 -27.60543 -24.74273 -22.76563 -21.58457 -19.02839 -18.59794 -18.29678 -17.63747 -16.63925 -16.59206 -16.26330 -15.79977 -15.54172 -15.20069 -14.83308 -14.50518 -13.75853 -13.57005 -13.54528 -13.08070 -13.00208 -12.78618 -12.67410 -12.38745 -12.31142 -11.94449 -11.89011 -11.23981 -11.17643 -10.70602 -9.68495 -9.21513 -8.52296 -8.07305 -6.32966 0.47094 0.65563 1.35756 1.37661 1.49688 2.37725 2.49866 2.70836 2.93314 3.08018 3.90342 3.95818 4.23410 4.35578 4.44401 4.47126 4.48822 4.61080 4.67522 4.75084 4.78870 4.81561 5.05476 5.12383 5.39345 5.42081 5.66183 5.72324 5.87913 6.10192 6.54548 6.67135 6.77956 6.93675 7.12026 7.40844 8.86559 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.008152 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.385807 B = 3433.736452 C = 4024.975429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.082 3.918 4 C -0.181 4.181 5 C -0.169 4.169 6 C 0.072 3.928 7 O -0.334 6.334 8 C 0.019 3.981 9 C -0.060 4.060 10 C 0.257 3.743 11 H 0.012 0.988 12 N -0.843 5.843 13 C -0.543 4.543 14 H 0.040 0.960 15 C 0.020 3.980 16 N -0.918 5.918 17 Si 0.960 3.040 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.275 1.275 21 C -0.124 4.124 22 H 0.063 0.937 23 H 0.118 0.882 24 H 0.064 0.936 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.318 0.682 31 H 0.346 0.654 32 H 0.267 0.733 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 0.650 0.470 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.038 3.962 4 C -0.199 4.199 5 C -0.187 4.187 6 C 0.027 3.973 7 O -0.249 6.249 8 C -0.076 4.076 9 C -0.061 4.061 10 C 0.147 3.853 11 H 0.030 0.970 12 N -0.372 5.372 13 C -0.583 4.583 14 H 0.058 0.942 15 C -0.180 4.180 16 N -0.559 5.559 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.201 1.201 21 C -0.143 4.143 22 H 0.081 0.919 23 H 0.136 0.864 24 H 0.083 0.917 25 H 0.179 0.821 26 H 0.176 0.824 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.661 0.657 1.193 15.720 hybrid contribution 0.904 0.490 -1.689 1.978 sum -14.756 1.147 -0.496 14.809 Atomic orbital electron populations 1.23314 0.76712 1.05368 1.02139 1.86042 1.23303 1.26499 1.89482 1.18907 0.91634 0.85156 1.00553 1.21163 1.00882 0.90645 1.07221 1.21205 0.91820 0.99703 1.05979 1.18971 0.91630 0.85299 1.01405 1.86236 1.36651 1.12875 1.89099 1.23263 0.96154 0.86174 1.01962 1.19584 0.96791 0.90686 0.99030 1.17501 0.85997 0.89101 0.92749 0.97026 1.59530 1.17289 1.05390 1.55010 1.21901 0.92042 1.49455 0.94862 0.94187 1.25730 0.96809 0.94445 1.00973 1.69858 1.02461 1.50918 1.32629 0.85491 0.78007 0.77972 0.80013 1.19911 1.20368 1.20081 1.20054 0.91866 0.97365 1.05000 0.91863 0.86412 0.91691 0.82104 0.82448 0.91882 0.91409 0.87559 0.87174 0.83976 0.92368 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -10.55 10.50 -93.36 -0.98 -11.53 16 3 C 0.08 2.93 6.69 22.49 0.15 3.08 16 4 C -0.18 -5.43 9.03 22.35 0.20 -5.23 16 5 C -0.17 -5.46 9.03 22.35 0.20 -5.26 16 6 C 0.07 3.05 6.65 22.49 0.15 3.20 16 7 O -0.33 -14.19 9.73 -93.33 -0.91 -15.10 16 8 C 0.02 0.52 9.81 113.37 1.11 1.64 16 9 C -0.06 -2.85 5.03 -19.78 -0.10 -2.95 16 10 C 0.26 14.08 2.60 43.42 0.11 14.19 16 11 H 0.01 0.74 7.85 -2.39 -0.02 0.72 16 12 N -0.84 -43.59 8.67 -174.96 -1.52 -45.11 16 13 C -0.54 -31.38 8.70 25.60 0.22 -31.16 16 14 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 15 C 0.02 1.12 5.38 84.66 0.46 1.58 16 16 N -0.92 -53.22 11.55 21.45 0.25 -52.97 16 17 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 21 C -0.12 -5.34 9.19 22.35 0.21 -5.13 16 22 H 0.06 1.03 7.66 -2.39 -0.02 1.02 16 23 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 25 H 0.16 3.41 6.29 -2.91 -0.02 3.39 16 26 H 0.16 3.82 6.29 -2.91 -0.02 3.80 16 27 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 28 H 0.07 1.53 7.66 -2.39 -0.02 1.51 16 29 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.32 15.56 7.28 -89.69 -0.65 14.91 16 31 H 0.35 18.94 7.09 -89.69 -0.64 18.30 16 32 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 33 H 0.13 5.50 6.25 -2.91 -0.02 5.48 16 Total: -1.00 -68.73 277.25 2.55 -66.19 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.15 Total: 36.23 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.83 Total: -24.56 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -1.27 Total: -98.08 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.89 Total: -26.63 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.73 2.55 -66.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071510022.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.435 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds