Wall clock time and date at job start Mon Mar 30 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00072 * 2 1 4 4 C 1.38797 * 120.02645 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05322 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11049 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.97374 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47022 * 219.99909 * 7 6 5 9 9 N 1.46903 * 109.47016 * 339.99934 * 7 6 5 10 10 C 1.50704 * 109.47285 * 99.99658 * 7 6 5 11 11 H 1.07996 * 119.99747 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99922 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00091 * 179.97438 * 12 10 7 14 14 Si 1.86796 * 119.99824 * 0.02562 * 12 10 7 15 15 H 1.48506 * 109.47508 * 89.99964 * 14 12 10 16 16 H 1.48500 * 109.47101 * 209.99783 * 14 12 10 17 17 H 1.48500 * 109.47502 * 329.99950 * 14 12 10 18 18 C 1.38750 * 120.05532 * 0.02562 * 6 5 4 19 19 O 1.35900 * 120.02845 * 180.02562 * 18 6 5 20 20 C 1.42903 * 116.99934 * 179.97438 * 19 18 6 21 21 C 1.38615 * 120.02764 * 179.97438 * 3 2 1 22 22 H 1.08997 * 109.47251 * 300.00322 * 1 2 3 23 23 H 1.09003 * 109.46850 * 60.00726 * 1 2 3 24 24 H 1.09002 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.07992 * 119.97014 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.94483 * 179.97438 * 5 4 3 27 27 H 1.00898 * 111.00381 * 59.99732 * 9 7 6 28 28 H 1.00896 * 110.99860 * 183.95961 * 9 7 6 29 29 H 0.96999 * 120.00332 * 179.97438 * 13 12 10 30 30 H 1.08997 * 109.47042 * 59.99597 * 20 19 18 31 31 H 1.08997 * 109.47120 * 179.97438 * 20 19 18 32 32 H 1.08997 * 109.46951 * 299.99975 * 20 19 18 33 33 H 1.08004 * 120.05142 * 359.74932 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 3.9775 5.0268 0.0028 8 1 4.8442 4.9960 -0.6575 9 7 3.0374 6.0516 -0.4706 10 6 4.4239 5.3627 1.4024 11 1 4.2343 4.6714 2.2102 12 6 5.0753 6.5522 1.6515 13 7 5.4644 6.8456 2.8729 14 14 5.4038 7.7474 0.2541 15 1 4.2607 8.6870 0.1271 16 1 6.6442 8.5127 0.5386 17 1 5.5676 6.9930 -1.0145 18 6 4.0567 2.5210 0.0011 19 8 5.4137 2.5960 0.0021 20 6 6.1317 1.3604 0.0021 21 6 3.4302 1.2840 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2121 2.3187 0.0014 26 1 1.3277 4.5114 0.0011 27 1 2.2246 6.0997 0.1254 28 1 3.4885 6.9514 -0.5404 29 1 5.9230 7.6822 3.0481 30 1 5.8706 0.7886 -0.8883 31 1 7.2027 1.5627 0.0025 32 1 5.8693 0.7877 0.8916 33 1 4.0196 0.3791 0.0050 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071510024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:03 Heat of formation + Delta-G solvation = -37.842068 kcal Electronic energy + Delta-G solvation = -16985.699490 eV Core-core repulsion = 14205.741572 eV Total energy + Delta-G solvation = -2779.957918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04650 -38.52830 -36.51157 -34.40389 -31.77870 -29.95841 -29.41213 -27.07283 -26.71719 -25.91168 -22.76067 -21.50744 -19.95591 -18.31152 -17.01047 -16.42161 -15.88170 -15.58631 -15.32984 -15.06815 -14.67023 -14.19186 -14.15849 -13.15388 -12.79347 -12.47048 -12.35292 -12.25695 -11.80205 -11.65212 -11.31324 -11.14477 -10.76352 -10.66710 -10.39661 -10.05931 -9.98389 -9.43656 -8.68535 -8.07345 -7.69901 -7.12747 -6.13186 -4.14197 1.92168 2.04032 3.18861 3.33679 3.36036 3.45739 3.89772 4.32073 4.34089 5.10785 5.14452 5.22725 5.32676 5.38937 5.41710 5.51602 5.53686 5.58604 5.79862 5.94047 6.03963 6.05935 6.26932 6.65803 6.76127 6.99878 7.17058 7.33206 7.56331 7.66986 8.02062 8.14387 8.35258 8.58909 8.94671 9.46734 10.99978 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.007746 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.595225 B = 3613.911432 C = 4096.812399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.136 3.864 4 C -0.245 4.245 5 C -0.041 4.041 6 C -0.086 4.086 7 C 0.218 3.782 8 H 0.055 0.945 9 N -0.851 5.851 10 C -0.530 4.530 11 H 0.074 0.926 12 C 0.071 3.929 13 N -0.894 5.894 14 Si 0.872 3.128 15 H -0.276 1.276 16 H -0.292 1.292 17 H -0.259 1.259 18 C 0.166 3.834 19 O -0.291 6.291 20 C 0.027 3.973 21 C -0.245 4.245 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.329 0.671 28 H 0.317 0.683 29 H 0.264 0.736 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -10.672 -6.505 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.092 3.908 4 C -0.264 4.264 5 C -0.059 4.059 6 C -0.088 4.088 7 C 0.109 3.891 8 H 0.072 0.928 9 N -0.384 5.384 10 C -0.570 4.570 11 H 0.092 0.908 12 C -0.132 4.132 13 N -0.532 5.532 14 Si 0.701 3.299 15 H -0.203 1.203 16 H -0.219 1.219 17 H -0.183 1.183 18 C 0.119 3.881 19 O -0.203 6.203 20 C -0.069 4.069 21 C -0.264 4.264 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.045 -11.001 -7.062 14.403 hybrid contribution 0.195 0.988 0.458 1.106 sum -5.850 -10.013 -6.604 13.346 Atomic orbital electron populations 1.22954 0.79003 1.03117 1.01357 1.85983 1.20910 1.27603 1.89325 1.18507 0.91433 0.83739 0.97133 1.21012 0.99306 0.92337 1.13755 1.20564 0.93380 0.96680 0.95285 1.19365 0.92466 0.94194 1.02726 1.18232 0.90493 0.84985 0.95408 0.92772 1.59778 1.11549 1.09685 1.57412 1.21585 1.37583 1.04540 0.93311 0.90827 1.25013 0.94768 0.98005 0.95382 1.69896 1.39503 1.24314 1.19516 0.87026 0.77748 0.81533 0.83607 1.20316 1.21881 1.18333 1.18500 0.82598 0.92349 0.94636 1.86296 1.15065 1.30978 1.87930 1.23001 0.96954 0.86256 1.00691 1.20215 0.92485 0.97100 1.16650 0.92799 0.92862 0.88885 0.86178 0.85016 0.85839 0.86677 0.92583 0.93295 0.88624 0.92987 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.93 10.49 -19.42 -0.20 -5.14 16 3 C 0.14 2.37 6.68 -39.24 -0.26 2.11 16 4 C -0.25 -4.15 9.04 -39.41 -0.36 -4.51 16 5 C -0.04 -0.78 9.24 -39.63 -0.37 -1.15 16 6 C -0.09 -1.90 5.04 -104.45 -0.53 -2.43 16 7 C 0.22 5.35 2.13 -70.01 -0.15 5.20 16 8 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 9 N -0.85 -18.94 8.62 -6.65 -0.06 -19.00 16 10 C -0.53 -15.04 9.29 -34.44 -0.32 -15.36 16 11 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 14 Si 0.87 21.37 24.61 -169.99 -4.18 17.19 16 15 H -0.28 -6.45 7.01 56.52 0.40 -6.05 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 18 C 0.17 3.44 6.65 -39.24 -0.26 3.18 16 19 O -0.29 -5.99 9.72 -19.43 -0.19 -6.17 16 20 C 0.03 0.39 9.81 101.05 0.99 1.38 16 21 C -0.25 -4.46 8.97 -39.29 -0.35 -4.82 16 22 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 23 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.12 1.66 6.29 -52.49 -0.33 1.33 16 26 H 0.13 2.34 6.24 -52.49 -0.33 2.02 16 27 H 0.33 6.84 7.28 -39.29 -0.29 6.55 16 28 H 0.32 7.21 4.30 -39.29 -0.17 7.04 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.71 7.66 -51.93 -0.40 0.31 16 33 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 LS Contribution 270.73 15.07 4.08 4.08 Total: -1.00 -32.39 270.73 -4.32 -36.70 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -3.83 Total: 11.98 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.71 Total: -13.13 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.72 Total: -45.51 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.39 Total: -11.31 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.18 Total: 17.19 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.39 -4.32 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071510024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.138 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds