Wall clock time and date at job start Mon Mar 30 2020 03:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47241 * 296.13702 * 3 2 1 5 5 C 1.37105 * 119.99423 * 270.87201 * 4 3 2 6 6 H 1.07999 * 119.99692 * 180.92982 * 5 4 3 7 7 C 1.38945 * 120.00000 * 0.93374 * 5 4 3 8 8 N 1.31407 * 120.00229 * 29.33495 * 7 5 4 9 9 Si 1.86803 * 119.99764 * 209.32792 * 7 5 4 10 10 H 1.48504 * 109.46939 * 94.99398 * 9 7 5 11 11 H 1.48504 * 109.47539 * 214.99465 * 9 7 5 12 12 H 1.48508 * 109.47294 * 334.99621 * 9 7 5 13 13 C 1.34763 * 120.00308 * 90.87785 * 4 3 2 14 14 O 1.21293 * 120.00416 * 180.02562 * 13 4 3 15 15 C 1.50706 * 120.00101 * 359.97438 * 13 4 3 16 16 C 1.53002 * 109.47096 * 186.10090 * 15 13 4 17 17 N 1.46904 * 112.84967 * 295.01951 * 16 15 13 18 18 C 1.53777 * 113.61613 * 66.21883 * 16 15 13 19 19 C 1.53779 * 87.08406 * 139.97881 * 18 16 15 20 20 C 1.53782 * 87.16939 * 334.52636 * 19 18 16 21 21 H 1.08997 * 109.46972 * 176.13519 * 3 2 1 22 22 H 1.08998 * 109.47305 * 56.13907 * 3 2 1 23 23 H 0.97007 * 119.99917 * 180.02562 * 8 7 5 24 24 H 1.08996 * 109.47019 * 66.10105 * 15 13 4 25 25 H 1.08996 * 109.47239 * 306.09882 * 15 13 4 26 26 H 1.00903 * 110.99864 * 316.47668 * 17 16 15 27 27 H 1.00900 * 110.99584 * 80.43123 * 17 16 15 28 28 H 1.08997 * 113.61407 * 25.42766 * 18 16 15 29 29 H 1.09001 * 113.69251 * 254.54185 * 18 16 15 30 30 H 1.08999 * 113.61534 * 89.10958 * 19 18 16 31 31 H 1.08996 * 113.61394 * 219.93657 * 19 18 16 32 32 H 1.09002 * 113.61681 * 140.02468 * 20 19 18 33 33 H 1.09001 * 113.61281 * 270.91881 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.6076 1.2400 5 6 3.3077 0.1711 2.3485 6 1 3.6822 -0.2747 3.2582 7 6 3.0398 1.5337 2.3017 8 7 2.1035 1.9921 1.5017 9 14 4.0105 2.7138 3.3761 10 1 5.1467 3.2705 2.5987 11 1 3.1256 3.8205 3.8209 12 1 4.5310 1.9888 4.5631 13 6 3.3387 -1.9323 1.2909 14 8 3.7428 -2.4360 2.3177 15 6 3.1062 -2.7882 0.0725 16 6 3.3084 -4.2603 0.4373 17 7 4.6924 -4.5679 0.8218 18 6 2.2603 -4.7998 1.4248 19 6 2.2578 -6.0936 0.5936 20 6 2.7215 -5.2388 -0.5977 21 1 2.9708 1.0261 -0.0693 22 1 2.9716 -0.5718 -0.8533 23 1 1.9167 2.9434 1.4688 24 1 3.8123 -2.5073 -0.7089 25 1 2.0881 -2.6396 -0.2871 26 1 5.3485 -4.1245 0.1964 27 1 4.8692 -4.3024 1.7790 28 1 1.3139 -4.2600 1.3952 29 1 2.6403 -4.9324 2.4378 30 1 2.9975 -6.8242 0.9208 31 1 1.2659 -6.5256 0.4612 32 1 3.4751 -5.7253 -1.2171 33 1 1.9009 -4.8189 -1.1794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086853003.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:43 Heat of formation + Delta-G solvation = 3.783564 kcal Electronic energy + Delta-G solvation = -17212.790293 eV Core-core repulsion = 14466.930148 eV Total energy + Delta-G solvation = -2745.860144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12824 -39.47379 -37.52680 -36.18466 -33.83147 -32.71886 -30.41427 -29.09854 -26.60989 -26.44542 -23.81246 -20.88849 -19.87508 -19.48772 -18.12712 -17.90938 -16.82776 -16.40899 -16.21676 -15.85857 -15.49211 -15.27144 -14.73861 -14.34827 -14.17802 -13.82183 -13.54756 -13.26176 -13.13505 -13.07653 -12.79354 -12.36416 -12.30537 -12.14621 -12.13163 -11.64054 -11.36607 -11.02538 -11.00765 -10.32818 -10.02706 -9.46168 -8.46774 -5.87984 1.36242 1.47110 1.56777 1.79517 2.04847 2.21367 2.33159 2.91449 3.10883 3.57762 3.59823 3.74273 3.87048 4.01844 4.06410 4.30458 4.52014 4.58292 4.69718 4.81590 4.88718 4.95549 4.97998 5.14923 5.24194 5.49097 5.52481 5.53986 5.99766 6.38312 6.42705 6.69939 6.94376 7.13245 7.38724 7.96209 8.56818 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031775 B = 0.007829 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.993105 B = 3575.419411 C = 4133.235477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.257 3.743 3 C 0.214 3.786 4 N -0.457 5.457 5 C -0.348 4.348 6 H 0.082 0.918 7 C 0.011 3.989 8 N -0.883 5.883 9 Si 0.977 3.023 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.280 1.280 13 C 0.448 3.552 14 O -0.607 6.607 15 C -0.148 4.148 16 C 0.111 3.889 17 N -0.816 5.816 18 C -0.136 4.136 19 C -0.122 4.122 20 C -0.113 4.113 21 H 0.131 0.869 22 H 0.136 0.864 23 H 0.276 0.724 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.342 0.658 27 H 0.345 0.655 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -7.027 -7.830 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.061 4.061 3 C 0.087 3.913 4 N -0.177 5.177 5 C -0.475 4.475 6 H 0.100 0.900 7 C -0.192 4.192 8 N -0.522 5.522 9 Si 0.802 3.198 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.205 1.205 13 C 0.239 3.761 14 O -0.492 6.492 15 C -0.190 4.190 16 C 0.017 3.983 17 N -0.346 5.346 18 C -0.174 4.174 19 C -0.159 4.159 20 C -0.151 4.151 21 H 0.149 0.851 22 H 0.153 0.847 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.104 0.896 26 H 0.155 0.845 27 H 0.160 0.840 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.826 -7.847 -7.494 11.213 hybrid contribution 0.493 2.175 1.208 2.536 sum 3.318 -5.672 -6.286 9.094 Atomic orbital electron populations 1.80909 1.14815 1.12532 1.10802 1.29938 0.95926 0.89676 0.90516 1.19377 0.79958 1.03887 0.88054 1.43935 1.56688 1.06513 1.10600 1.19576 1.44215 0.89853 0.93874 0.89997 1.25735 0.95596 0.98426 0.99419 1.70086 1.25403 1.15987 1.40694 0.85167 0.78736 0.77378 0.78499 1.18528 1.21247 1.20477 1.20932 0.82481 0.81793 0.90895 1.90464 1.51620 1.72372 1.34776 1.22375 1.04120 0.96222 0.96291 1.21714 0.89875 0.89657 0.97057 1.58911 1.01846 1.65223 1.08658 1.22935 0.97968 0.98350 0.98141 1.22660 1.01380 0.95564 0.96288 1.22994 1.00293 0.96171 0.95679 0.85122 0.84670 0.91356 0.86712 0.89554 0.84498 0.84020 0.92027 0.93555 0.89916 0.90955 0.89795 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.76 18.54 20.01 0.37 -23.38 16 2 C 0.26 10.96 13.70 89.44 1.23 12.19 16 3 C 0.21 7.96 4.92 84.57 0.42 8.38 16 4 N -0.46 -20.41 2.58 -645.43 -1.67 -22.08 16 5 C -0.35 -17.87 9.43 84.04 0.79 -17.08 16 6 H 0.08 4.63 7.31 -2.91 -0.02 4.61 16 7 C 0.01 0.53 4.91 84.93 0.42 0.95 16 8 N -0.88 -42.83 9.32 21.66 0.20 -42.63 16 9 Si 0.98 39.56 29.64 68.60 2.03 41.59 16 10 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 11 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 C 0.45 18.78 7.35 87.66 0.64 19.43 16 14 O -0.61 -29.45 13.47 -3.07 -0.04 -29.49 16 15 C -0.15 -4.49 3.66 29.85 0.11 -4.38 16 16 C 0.11 3.21 0.90 4.14 0.00 3.22 16 17 N -0.82 -23.41 9.11 -149.13 -1.36 -24.77 16 18 C -0.14 -4.37 6.49 31.12 0.20 -4.17 16 19 C -0.12 -3.00 7.99 31.12 0.25 -2.75 16 20 C -0.11 -2.58 7.46 31.21 0.23 -2.35 16 21 H 0.13 5.11 5.96 -2.39 -0.01 5.09 16 22 H 0.14 3.54 6.58 -2.39 -0.02 3.52 16 23 H 0.28 12.82 8.31 -92.70 -0.77 12.05 16 24 H 0.11 2.71 7.71 -2.39 -0.02 2.69 16 25 H 0.09 2.56 7.60 -2.39 -0.02 2.54 16 26 H 0.34 8.58 8.93 -89.69 -0.80 7.78 16 27 H 0.35 11.77 7.42 -89.69 -0.67 11.10 16 28 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.86 8.06 -2.39 -0.02 1.84 16 Total: -1.00 -61.68 279.34 3.51 -58.17 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.32 Total: 29.15 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 4.29 Total: 13.43 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -2.45 Total: -112.86 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.49 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -61.68 3.51 -58.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086853003.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.957 kcal (2) G-P(sol) polarization free energy of solvation -61.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds