Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.46300 * 113.99855 * 2 1 4 4 C 1.46900 * 111.00204 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47588 * 173.24788 * 4 3 2 6 6 C 1.53005 * 109.46868 * 53.24906 * 4 3 2 7 7 C 1.50702 * 109.47298 * 293.25523 * 4 3 2 8 8 C 1.38302 * 119.92936 * 229.70979 * 7 4 3 9 9 C 1.38100 * 120.06842 * 179.72248 * 8 7 4 10 10 C 1.38878 * 119.93075 * 0.54448 * 9 8 7 11 11 O 1.35751 * 120.06941 * 179.74904 * 10 9 8 12 12 C 1.34830 * 116.99586 * 185.39306 * 11 10 9 13 13 H 1.07998 * 120.00368 * 354.87973 * 12 11 10 14 14 C 1.38662 * 119.99589 * 174.87458 * 12 11 10 15 15 N 1.31560 * 119.99873 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99957 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47285 * 59.99947 * 16 14 12 18 18 H 1.48498 * 109.47283 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.47273 * 300.00419 * 16 14 12 20 20 C 1.38881 * 119.86164 * 359.72879 * 10 9 8 21 21 C 1.38101 * 119.92779 * 359.97438 * 20 10 9 22 22 H 1.09004 * 109.47429 * 299.99623 * 1 2 3 23 23 H 1.09001 * 109.47338 * 59.99424 * 1 2 3 24 24 H 1.09001 * 109.47570 * 179.97438 * 1 2 3 25 25 H 1.00911 * 110.99786 * 56.05124 * 3 2 1 26 26 H 1.08997 * 109.46981 * 179.97438 * 6 4 3 27 27 H 1.08999 * 109.47289 * 299.99999 * 6 4 3 28 28 H 1.09000 * 109.46826 * 60.00029 * 6 4 3 29 29 H 1.08003 * 119.96277 * 359.97438 * 8 7 4 30 30 H 1.07999 * 120.03447 * 180.26942 * 9 8 7 31 31 H 0.96998 * 119.99885 * 179.97438 * 15 14 12 32 32 H 1.07996 * 120.03470 * 179.97438 * 20 10 9 33 33 H 1.08004 * 119.96499 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 3.4910 1.2597 0.0006 5 1 3.9073 2.2598 -0.1202 6 6 3.9556 0.3709 -1.1549 7 6 3.9628 0.6735 1.3063 8 6 4.9578 1.3076 2.0279 9 6 5.3883 0.7760 3.2275 10 6 4.8291 -0.4027 3.7036 11 8 5.2538 -0.9304 4.8800 12 6 4.7506 -2.1316 5.2291 13 1 3.9820 -2.5912 4.6254 14 6 5.2201 -2.7769 6.3630 15 7 6.1561 -2.2169 7.0985 16 14 4.5225 -4.4408 6.8470 17 1 4.7641 -5.4159 5.7534 18 1 5.1864 -4.9138 8.0883 19 1 3.0619 -4.3152 7.0845 20 6 3.8341 -1.0401 2.9739 21 6 3.4035 -0.5001 1.7780 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6904 1.8809 0.7815 26 1 5.0441 0.3143 -1.1547 27 1 3.5393 -0.6292 -1.0341 28 1 3.6143 0.7949 -2.0993 29 1 5.3956 2.2217 1.6547 30 1 6.1623 1.2740 3.7927 31 1 6.4842 -2.6681 7.8920 32 1 3.3975 -1.9570 3.3413 33 1 2.6295 -0.9951 1.2102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134237418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = -1.907407 kcal Electronic energy + Delta-G solvation = -16539.168033 eV Core-core repulsion = 13760.768358 eV Total energy + Delta-G solvation = -2778.399675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20262 -37.58123 -36.14864 -33.82633 -32.19627 -30.13972 -28.77312 -27.88153 -25.96340 -25.32110 -22.48412 -21.79566 -19.94514 -17.99915 -17.15323 -16.83740 -15.86385 -15.17982 -14.49979 -14.49488 -14.24236 -13.74926 -13.59435 -13.19980 -12.90485 -12.61874 -12.44791 -11.82570 -11.76468 -11.67015 -11.34330 -11.09424 -10.99616 -10.67968 -10.61973 -10.45374 -10.24122 -9.32802 -8.84221 -8.51371 -8.16167 -7.17626 -6.46013 -4.04872 2.22776 2.27801 2.94191 3.12277 3.13811 3.16246 3.96020 4.56221 4.95527 5.07869 5.21994 5.28376 5.36905 5.45544 5.49710 5.62831 5.66778 5.81146 5.90278 5.99882 6.15928 6.22056 6.45086 6.50467 6.68538 6.72389 6.96420 7.05468 7.22508 7.33341 7.43604 7.47404 7.83860 7.99344 8.99575 9.69693 10.71948 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031935 B = 0.005942 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.570214 B = 4711.324353 C = 5317.048903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.246 6.246 3 N -0.500 5.500 4 C 0.133 3.867 5 H 0.099 0.901 6 C -0.131 4.131 7 C -0.225 4.225 8 C -0.066 4.066 9 C -0.197 4.197 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.393 4.393 13 H 0.091 0.909 14 C 0.040 3.960 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 C -0.238 4.238 21 C -0.057 4.057 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.334 0.666 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.271 0.729 32 H 0.125 0.875 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 4.598 -11.733 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 N -0.170 5.170 4 C 0.024 3.976 5 H 0.117 0.883 6 C -0.189 4.189 7 C -0.227 4.227 8 C -0.085 4.085 9 C -0.216 4.216 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.469 4.469 13 H 0.108 0.892 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.257 4.257 21 C -0.075 4.075 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.105 4.491 -12.038 14.682 hybrid contribution -0.356 -0.957 1.372 1.710 sum -7.460 3.535 -10.666 13.488 Atomic orbital electron populations 1.22681 0.82113 1.02170 1.00058 1.90777 1.19184 1.18669 1.96785 1.66967 1.06989 0.97485 1.45582 1.20632 0.84583 0.99478 0.92912 0.88304 1.21679 1.00463 1.00244 0.96525 1.19934 1.03933 0.99821 0.99020 1.20522 0.95864 0.98293 0.93837 1.20176 1.05086 0.97905 0.98479 1.19439 0.91787 0.92443 0.86133 1.83973 1.60636 1.33681 1.29816 1.21287 1.21290 0.93768 1.10535 0.89152 1.25290 0.96156 0.99581 0.95450 1.70030 1.26234 1.38314 1.15202 0.85785 0.78952 0.80332 0.78390 1.19476 1.20222 1.19518 1.21201 1.02746 1.03704 0.98053 1.21010 0.97690 0.94048 0.94743 0.94285 0.93669 0.89484 0.85088 0.92399 0.91928 0.92664 0.87167 0.86615 0.91957 0.85755 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.46 101.05 1.16 1.45 16 2 O -0.25 -3.49 7.46 -13.92 -0.10 -3.60 16 3 N -0.50 -6.63 7.11 -5.65 -0.04 -6.67 16 4 C 0.13 1.85 3.50 -68.86 -0.24 1.60 16 5 H 0.10 1.19 7.91 -51.93 -0.41 0.78 16 6 C -0.13 -1.75 9.04 37.16 0.34 -1.42 16 7 C -0.22 -3.88 4.89 -104.58 -0.51 -4.40 16 8 C -0.07 -1.18 9.66 -39.61 -0.38 -1.57 16 9 C -0.20 -4.23 9.99 -39.40 -0.39 -4.62 16 10 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 11 O -0.18 -5.17 9.76 0.05 0.00 -5.17 16 12 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 13 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 14 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 15 N -0.86 -25.51 13.67 55.48 0.76 -24.76 16 16 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.24 -5.36 9.17 -39.39 -0.36 -5.72 16 21 C -0.06 -1.09 8.83 -39.61 -0.35 -1.44 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.33 4.16 8.92 -39.29 -0.35 3.81 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.93 7.31 -51.93 -0.38 0.55 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.11 1.60 7.97 -52.48 -0.42 1.18 16 30 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.12 2.83 5.64 -52.49 -0.30 2.53 16 33 H 0.12 2.27 5.49 -52.48 -0.29 1.99 16 LS Contribution 282.55 15.07 4.26 4.26 Total: -1.00 -30.98 282.55 -5.05 -36.02 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.09 Total: 6.58 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -0.81 Total: -22.37 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.72 Total: -31.43 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.10 Total: -8.76 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.98 -5.05 -36.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134237418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.114 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds