Wall clock time and date at job start Mon Mar 30 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46896 * 109.47514 * 2 1 4 4 C 1.46900 * 110.99712 * 299.01249 * 3 2 1 5 5 C 1.50692 * 109.47450 * 293.95375 * 4 3 2 6 6 H 1.08008 * 120.00078 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00406 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00008 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00399 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47086 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47191 * 120.00063 * 9 7 5 12 12 H 1.48500 * 109.47578 * 240.00316 * 9 7 5 13 13 C 1.46903 * 110.99926 * 62.96564 * 3 2 1 14 14 C 1.50692 * 109.46971 * 71.55845 * 13 3 2 15 15 C 1.35293 * 125.46982 * 89.15798 * 14 13 3 16 16 C 1.40116 * 107.22991 * 179.97438 * 15 14 13 17 17 C 1.38071 * 106.51912 * 359.97438 * 16 15 14 18 18 C 1.41319 * 126.11904 * 180.02562 * 17 16 15 19 19 O 1.21438 * 119.99803 * 180.02562 * 18 17 16 20 20 O 1.33832 * 125.47417 * 268.84585 * 14 13 3 21 21 H 1.08995 * 109.47158 * 178.82277 * 1 2 3 22 22 H 1.08995 * 109.46945 * 298.82216 * 1 2 3 23 23 H 1.08997 * 109.46778 * 58.81941 * 1 2 3 24 24 H 1.08997 * 109.46761 * 239.99550 * 2 1 3 25 25 H 1.09006 * 109.47032 * 119.99888 * 2 1 3 26 26 H 1.09004 * 109.47375 * 53.95752 * 4 3 2 27 27 H 1.09001 * 109.47156 * 173.95056 * 4 3 2 28 28 H 0.97003 * 120.00553 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46895 * 191.55814 * 13 3 2 30 30 H 1.08993 * 109.47059 * 311.55965 * 13 3 2 31 31 H 1.08003 * 126.38547 * 359.95974 * 15 14 13 32 32 H 1.08000 * 126.74509 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.99586 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5682 2.1029 -1.1994 5 6 2.2102 1.4957 -2.4200 6 1 2.8858 0.6595 -2.3154 7 6 1.9343 2.0066 -3.6705 8 7 1.1112 3.0244 -3.7980 9 14 2.7306 1.2543 -5.1835 10 1 3.6093 0.1298 -4.7730 11 1 1.6758 0.7490 -6.0986 12 1 3.5394 2.2856 -5.8818 13 6 1.6076 2.0891 1.2216 14 6 2.3896 1.5584 2.3953 15 6 3.5833 2.0313 2.8218 16 6 3.9607 1.2648 3.9323 17 6 2.9539 0.3413 4.1324 18 6 2.9138 -0.6404 5.1480 19 8 1.9692 -1.4002 5.2212 20 8 2.0121 0.5474 3.1869 21 1 -0.3633 -1.0274 -0.0211 22 1 -0.3633 0.4954 0.9003 23 1 -0.3633 0.5321 -0.8792 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 0.4841 2.0256 -1.2825 27 1 1.8527 3.1524 -1.1232 28 1 0.9173 3.3842 -4.6777 29 1 1.8008 3.1559 1.1087 30 1 0.5431 1.9285 1.3918 31 1 4.1414 2.8474 2.3871 32 1 4.8616 1.3751 4.5176 33 1 3.7232 -0.7150 5.8591 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161278747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:24 Heat of formation + Delta-G solvation = -34.156554 kcal Electronic energy + Delta-G solvation = -16588.507953 eV Core-core repulsion = 13808.709850 eV Total energy + Delta-G solvation = -2779.798102 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.64037 -39.79717 -38.95560 -34.80427 -34.22175 -32.50294 -31.00858 -29.31460 -26.99409 -25.15222 -24.03651 -22.89992 -21.52946 -20.90790 -18.46061 -18.13351 -17.55966 -17.00264 -16.76275 -16.47986 -16.17255 -15.81993 -14.93864 -14.73031 -14.37148 -13.96182 -13.88788 -13.79560 -13.48496 -13.16968 -12.82514 -12.71251 -12.60153 -12.45580 -11.92991 -11.67895 -11.31898 -11.08943 -10.91817 -10.60326 -9.53963 -9.07012 -8.19627 -6.28091 -0.26721 1.29487 1.41225 1.42830 1.55318 1.82859 2.06991 2.41478 3.13704 3.31173 3.52488 3.73698 4.00334 4.13520 4.22151 4.30551 4.35908 4.48790 4.57157 4.76940 4.83635 4.88758 4.91883 4.99581 5.14879 5.29350 5.41842 5.47390 5.65135 5.92550 6.02819 6.23765 6.51857 6.55324 6.86180 7.40841 8.91244 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040399 B = 0.005364 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.922003 B = 5218.645408 C = 5363.580111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 N -0.534 5.534 4 C 0.204 3.796 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.115 3.885 14 C 0.038 3.962 15 C -0.220 4.220 16 C -0.086 4.086 17 C -0.174 4.174 18 C 0.419 3.581 19 O -0.517 6.517 20 O -0.178 6.178 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.060 0.940 26 H -0.016 1.016 27 H 0.012 0.988 28 H 0.264 0.736 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.170 0.830 32 H 0.210 0.790 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -2.547 15.591 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.065 4.065 3 N -0.258 5.258 4 C 0.078 3.922 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.203 1.203 13 C -0.012 4.012 14 C -0.016 4.016 15 C -0.239 4.239 16 C -0.105 4.105 17 C -0.223 4.223 18 C 0.283 3.717 19 O -0.395 6.395 20 O -0.074 6.074 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.002 0.998 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.188 0.812 32 H 0.227 0.773 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.026 -3.024 15.477 16.882 hybrid contribution -0.762 0.144 -1.244 1.466 sum 5.264 -2.880 14.234 15.447 Atomic orbital electron populations 1.22254 0.98082 1.02379 1.01020 1.21927 0.93217 0.90296 1.01022 1.62281 1.59610 1.02584 1.01348 1.19498 0.93209 0.93018 0.86447 1.21418 1.26704 1.16251 0.91389 0.92321 1.25784 0.95785 0.95477 1.02106 1.70064 1.36863 1.25771 1.24523 0.85414 0.78298 0.78501 0.78885 1.19070 1.20632 1.20339 1.20727 0.96261 0.98779 0.85474 1.23089 0.96962 0.88509 0.93005 1.21929 0.96370 1.05589 1.00050 1.22993 0.99299 0.91911 0.96338 1.23212 0.92824 1.07498 0.98812 1.23076 0.89468 0.76830 0.82304 1.90621 1.37122 1.40357 1.71408 1.84131 1.44009 1.44006 1.35209 0.91188 0.92853 0.93532 0.91510 0.92126 0.99806 0.96951 0.92703 0.87058 0.93172 0.81238 0.77322 0.78581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.74 9.28 71.98 0.67 -6.08 16 2 C 0.06 2.57 5.73 86.31 0.49 3.06 16 3 N -0.53 -22.70 4.65 -905.38 -4.21 -26.91 16 4 C 0.20 10.38 4.49 85.55 0.38 10.76 16 5 C -0.52 -28.73 8.50 25.60 0.22 -28.51 16 6 H 0.06 3.24 7.11 -2.91 -0.02 3.22 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 9 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.12 4.07 5.37 85.55 0.46 4.53 16 14 C 0.04 1.20 6.06 25.00 0.15 1.35 16 15 C -0.22 -5.54 10.75 22.05 0.24 -5.30 16 16 C -0.09 -1.61 10.90 22.69 0.25 -1.36 16 17 C -0.17 -4.25 6.96 22.99 0.16 -4.09 16 18 C 0.42 8.21 11.40 68.58 0.78 8.99 16 19 O -0.52 -15.83 17.89 6.33 0.11 -15.72 16 20 O -0.18 -5.86 10.10 4.56 0.05 -5.81 16 21 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.05 1.90 6.30 -2.39 -0.02 1.88 16 23 H 0.05 1.98 6.24 -2.39 -0.01 1.97 16 24 H 0.07 2.91 6.83 -2.39 -0.02 2.89 16 25 H 0.06 2.34 6.97 -2.38 -0.02 2.32 16 26 H -0.02 -0.85 6.01 -2.38 -0.01 -0.87 16 27 H 0.01 0.67 7.87 -2.39 -0.02 0.65 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.11 3.67 7.82 -2.38 -0.02 3.65 16 30 H 0.05 1.77 5.91 -2.39 -0.01 1.76 16 31 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.21 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -70.79 283.36 3.63 -67.16 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.11 Total: 5.63 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 4.26 Total: -15.81 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.93 Total: -81.23 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.16 Total: -21.53 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -70.79 3.63 -67.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161278747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.003 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds