Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47687 * 2 1 4 4 C 1.50701 * 109.47288 * 239.99824 * 2 1 3 5 5 H 1.08000 * 119.99765 * 245.50667 * 4 2 1 6 6 C 1.37874 * 120.00303 * 65.50535 * 4 2 1 7 7 N 1.31518 * 119.99684 * 9.67854 * 6 4 2 8 8 Si 1.86797 * 120.00159 * 189.68287 * 6 4 2 9 9 H 1.48494 * 109.47505 * 84.99466 * 8 6 4 10 10 H 1.48504 * 109.46633 * 204.99635 * 8 6 4 11 11 H 1.48503 * 109.47052 * 324.98940 * 8 6 4 12 12 N 1.46902 * 109.46795 * 119.99731 * 2 1 3 13 13 C 1.46899 * 111.00141 * 58.95667 * 12 2 1 14 14 C 1.46895 * 111.00185 * 294.99878 * 12 2 1 15 15 C 1.50704 * 109.47138 * 189.99979 * 14 12 2 16 16 C 1.35294 * 125.46724 * 90.00330 * 15 14 12 17 17 C 1.40115 * 107.22381 * 179.97438 * 16 15 14 18 18 C 1.38069 * 106.52165 * 359.97438 * 17 16 15 19 19 C 1.41319 * 126.11866 * 179.97438 * 18 17 16 20 20 O 1.21434 * 119.99946 * 179.97438 * 19 18 17 21 21 O 1.33830 * 125.47379 * 269.69475 * 15 14 12 22 22 H 1.08997 * 109.47108 * 301.15239 * 1 2 3 23 23 H 1.08999 * 109.46959 * 61.15157 * 1 2 3 24 24 H 1.08998 * 109.47157 * 181.14973 * 1 2 3 25 25 H 0.96993 * 120.00103 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.47318 * 59.99363 * 13 12 2 27 27 H 1.08996 * 109.47423 * 179.97438 * 13 12 2 28 28 H 1.08997 * 109.47126 * 299.99753 * 13 12 2 29 29 H 1.08997 * 109.47069 * 309.99787 * 14 12 2 30 30 H 1.08999 * 109.47106 * 70.00132 * 14 12 2 31 31 H 1.07997 * 126.38313 * 359.93929 * 16 15 14 32 32 H 1.08001 * 126.74251 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.99525 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5780 -1.6375 -1.1337 6 6 1.7955 -0.1770 -2.4795 7 7 1.3032 1.0372 -2.5934 8 14 2.1736 -1.1789 -4.0101 9 1 1.0193 -2.0589 -4.3234 10 1 2.4223 -0.2630 -5.1522 11 1 3.3801 -2.0112 -3.7713 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6487 0.0392 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5828 -0.1734 4.0556 17 6 3.8830 -0.9759 5.1643 18 6 2.8103 -1.8284 5.3339 19 6 2.6815 -2.8160 6.3365 20 8 1.6844 -3.5076 6.3830 21 8 1.9047 -1.5472 4.3728 22 1 -0.3633 0.5316 0.8794 23 1 -0.3633 0.4958 -0.9001 24 1 -0.3633 -1.0274 0.0206 25 1 1.1369 1.4127 -3.4721 26 1 1.8762 -2.6151 0.3648 27 1 1.9059 -2.5658 2.1436 28 1 0.4385 -2.0742 1.2640 29 1 1.9298 1.0870 2.3125 30 1 0.5722 -0.0344 2.5726 31 1 4.2054 0.6057 3.6412 32 1 4.7775 -0.9351 5.7681 33 1 3.4700 -2.9557 7.0612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161284287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -9.578122 kcal Electronic energy + Delta-G solvation = -16634.407977 eV Core-core repulsion = 13855.675675 eV Total energy + Delta-G solvation = -2778.732302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.57310 -38.76811 -37.31635 -33.22439 -32.91764 -31.02916 -28.78713 -27.27900 -25.21682 -24.59821 -22.55138 -21.79140 -20.19816 -19.39181 -17.27338 -16.39195 -16.26156 -15.86431 -15.26961 -14.81669 -14.33088 -13.91474 -13.73533 -13.27130 -12.96789 -12.90382 -12.58120 -12.08282 -11.78314 -11.14596 -11.12695 -10.88496 -10.84059 -10.59772 -10.17153 -10.14774 -9.96607 -9.84984 -9.05982 -8.44812 -8.38206 -7.35924 -6.09684 -4.09449 0.70545 2.36097 2.83222 2.97180 3.29140 3.35634 3.38820 4.35803 4.41575 4.84996 4.89212 5.01773 5.06868 5.25464 5.59248 5.73562 5.78734 5.89211 6.02043 6.12888 6.29677 6.43605 6.54027 6.67426 6.78603 6.92425 6.96928 7.28206 7.43799 7.48982 7.75127 7.96489 8.18661 8.45624 8.94695 9.54111 11.00184 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043403 B = 0.005292 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.959856 B = 5289.887751 C = 5394.547263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.527 5.527 13 C 0.030 3.970 14 C 0.117 3.883 15 C 0.069 3.931 16 C -0.221 4.221 17 C -0.113 4.113 18 C -0.154 4.154 19 C 0.409 3.591 20 O -0.464 6.464 21 O -0.145 6.145 22 H 0.013 0.987 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.262 0.738 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.023 0.977 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -1.784 13.810 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.251 5.251 13 C -0.118 4.118 14 C -0.011 4.011 15 C 0.014 3.986 16 C -0.241 4.241 17 C -0.133 4.133 18 C -0.203 4.203 19 C 0.270 3.730 20 O -0.339 6.339 21 O -0.040 6.040 22 H 0.032 0.968 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.873 -2.193 13.638 14.346 hybrid contribution -0.427 -0.223 -0.911 1.031 sum 3.446 -2.415 12.726 13.404 Atomic orbital electron populations 1.22398 1.01036 0.99382 1.00133 1.19392 0.89453 0.95235 0.85453 0.93179 1.21032 1.35432 1.08282 0.89560 0.91817 1.24908 0.95340 0.94689 0.98995 1.69954 1.45247 1.13860 1.23919 0.86573 0.78739 0.80041 0.82456 1.20653 1.21317 1.19869 1.62496 1.59453 1.02215 1.00943 1.22312 0.97494 0.90698 1.01328 1.20786 0.96669 0.97829 0.85805 1.23394 0.94757 0.87645 0.92795 1.21587 0.97489 1.05594 0.99409 1.22498 0.98261 0.94697 0.97846 1.22327 0.92650 1.06827 0.98536 1.21932 0.89422 0.78602 0.83049 1.90624 1.31265 1.41586 1.70416 1.84173 1.41931 1.43836 1.34011 0.96794 0.90859 0.94549 0.92878 0.90372 0.93919 0.95865 0.87697 0.93281 0.82450 0.82319 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.36 37.16 0.31 -3.59 16 2 C 0.21 5.06 2.21 -68.86 -0.15 4.91 16 3 H 0.05 1.31 7.98 -51.93 -0.41 0.90 16 4 C -0.50 -13.43 7.97 -34.44 -0.27 -13.71 16 5 H 0.06 1.71 6.56 -52.49 -0.34 1.37 16 6 C 0.06 1.69 5.19 -17.82 -0.09 1.59 16 7 N -0.89 -24.86 12.17 55.43 0.67 -24.18 16 8 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.53 -11.02 4.73 -237.73 -1.13 -12.14 16 13 C 0.03 0.61 8.72 60.06 0.52 1.13 16 14 C 0.12 2.05 4.93 -4.98 -0.02 2.03 16 15 C 0.07 1.11 5.87 -35.36 -0.21 0.90 16 16 C -0.22 -3.03 10.76 -39.93 -0.43 -3.46 16 17 C -0.11 -1.28 10.90 -38.94 -0.42 -1.71 16 18 C -0.15 -2.07 6.96 -38.47 -0.27 -2.34 16 19 C 0.41 4.66 11.40 31.90 0.36 5.02 16 20 O -0.46 -7.41 17.89 -4.88 -0.09 -7.50 16 21 O -0.15 -2.46 9.91 -5.35 -0.05 -2.51 16 22 H 0.01 0.27 6.81 -51.93 -0.35 -0.08 16 23 H 0.07 1.85 6.89 -51.93 -0.36 1.49 16 24 H 0.04 0.81 6.32 -51.93 -0.33 0.48 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.08 1.65 6.43 -51.93 -0.33 1.32 16 27 H 0.04 0.82 6.61 -51.93 -0.34 0.47 16 28 H 0.02 0.46 6.26 -51.93 -0.32 0.14 16 29 H 0.10 1.70 8.00 -51.93 -0.42 1.28 16 30 H 0.05 0.86 6.96 -51.93 -0.36 0.50 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -30.75 280.14 -6.05 -36.79 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.98 Total: -1.41 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.67 Total: -9.22 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.45 Total: -36.32 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.14 Total: -10.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.75 -6.05 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161284287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.215 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds