Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47687 * 2 1 4 4 C 1.50701 * 109.47288 * 239.99824 * 2 1 3 5 5 H 1.08000 * 119.99765 * 245.50667 * 4 2 1 6 6 C 1.37874 * 120.00303 * 65.50535 * 4 2 1 7 7 N 1.31518 * 119.99684 * 9.67854 * 6 4 2 8 8 Si 1.86797 * 120.00159 * 189.68287 * 6 4 2 9 9 H 1.48494 * 109.47505 * 84.99466 * 8 6 4 10 10 H 1.48504 * 109.46633 * 204.99635 * 8 6 4 11 11 H 1.48503 * 109.47052 * 324.98940 * 8 6 4 12 12 N 1.46902 * 109.46795 * 119.99731 * 2 1 3 13 13 C 1.46899 * 111.00141 * 58.95667 * 12 2 1 14 14 C 1.46895 * 111.00185 * 294.99878 * 12 2 1 15 15 C 1.50704 * 109.47138 * 189.99979 * 14 12 2 16 16 C 1.35294 * 125.46724 * 90.00330 * 15 14 12 17 17 C 1.40115 * 107.22381 * 179.97438 * 16 15 14 18 18 C 1.38069 * 106.52165 * 359.97438 * 17 16 15 19 19 C 1.41319 * 126.11866 * 179.97438 * 18 17 16 20 20 O 1.21434 * 119.99946 * 179.97438 * 19 18 17 21 21 O 1.33830 * 125.47379 * 269.69475 * 15 14 12 22 22 H 1.08997 * 109.47108 * 301.15239 * 1 2 3 23 23 H 1.08999 * 109.46959 * 61.15157 * 1 2 3 24 24 H 1.08998 * 109.47157 * 181.14973 * 1 2 3 25 25 H 0.96993 * 120.00103 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.47318 * 59.99363 * 13 12 2 27 27 H 1.08996 * 109.47423 * 179.97438 * 13 12 2 28 28 H 1.08997 * 109.47126 * 299.99753 * 13 12 2 29 29 H 1.08997 * 109.47069 * 309.99787 * 14 12 2 30 30 H 1.08999 * 109.47106 * 70.00132 * 14 12 2 31 31 H 1.07997 * 126.38313 * 359.93929 * 16 15 14 32 32 H 1.08001 * 126.74251 * 180.02562 * 17 16 15 33 33 H 1.08002 * 119.99525 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5780 -1.6375 -1.1337 6 6 1.7955 -0.1770 -2.4795 7 7 1.3032 1.0372 -2.5934 8 14 2.1736 -1.1789 -4.0101 9 1 1.0193 -2.0589 -4.3234 10 1 2.4223 -0.2630 -5.1522 11 1 3.3801 -2.0112 -3.7713 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6487 0.0392 2.4181 15 6 2.3678 -0.5571 3.6006 16 6 3.5828 -0.1734 4.0556 17 6 3.8830 -0.9759 5.1643 18 6 2.8103 -1.8284 5.3339 19 6 2.6815 -2.8160 6.3365 20 8 1.6844 -3.5076 6.3830 21 8 1.9047 -1.5472 4.3728 22 1 -0.3633 0.5316 0.8794 23 1 -0.3633 0.4958 -0.9001 24 1 -0.3633 -1.0274 0.0206 25 1 1.1369 1.4127 -3.4721 26 1 1.8762 -2.6151 0.3648 27 1 1.9059 -2.5658 2.1436 28 1 0.4385 -2.0742 1.2640 29 1 1.9298 1.0870 2.3125 30 1 0.5722 -0.0344 2.5726 31 1 4.2054 0.6057 3.6412 32 1 4.7775 -0.9351 5.7681 33 1 3.4700 -2.9557 7.0612 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161284287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -30.093278 kcal Electronic energy + Delta-G solvation = -16635.297581 eV Core-core repulsion = 13855.675675 eV Total energy + Delta-G solvation = -2779.621906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.65112 -39.80209 -38.99309 -34.90966 -34.19787 -32.42192 -30.46379 -28.68067 -27.20738 -26.09627 -23.79718 -22.85760 -21.43997 -20.97739 -18.43695 -18.10476 -17.63243 -16.92622 -16.81784 -16.20787 -15.97717 -15.54803 -14.96942 -14.76999 -14.40744 -13.95512 -13.86978 -13.63921 -13.45321 -12.91054 -12.84429 -12.72094 -12.62362 -12.35385 -12.08271 -11.78707 -11.10651 -11.04053 -10.90986 -10.47265 -9.55252 -9.02679 -8.15535 -6.21300 -0.27221 1.29369 1.42749 1.44365 1.53264 1.82725 2.06633 2.43226 3.16059 3.34615 3.53357 3.74725 4.00540 4.25498 4.32397 4.39893 4.51341 4.61918 4.72052 4.76859 4.82606 4.88624 4.96353 5.02714 5.07812 5.42694 5.47287 5.61323 5.70381 5.92608 6.07927 6.34199 6.54992 6.58978 6.88773 7.45839 8.93753 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043403 B = 0.005292 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.959856 B = 5289.887751 C = 5394.547263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.025 0.975 4 C -0.519 4.519 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.534 5.534 13 C 0.041 3.959 14 C 0.120 3.880 15 C 0.035 3.965 16 C -0.218 4.218 17 C -0.086 4.086 18 C -0.175 4.175 19 C 0.419 3.581 20 O -0.518 6.518 21 O -0.180 6.180 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.262 0.738 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.020 0.980 29 H 0.113 0.887 30 H 0.044 0.956 31 H 0.172 0.828 32 H 0.210 0.790 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -2.260 15.320 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.043 0.957 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.258 5.258 13 C -0.108 4.108 14 C -0.007 4.007 15 C -0.018 4.018 16 C -0.238 4.238 17 C -0.105 4.105 18 C -0.224 4.224 19 C 0.283 3.717 20 O -0.396 6.396 21 O -0.076 6.076 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.189 0.811 32 H 0.227 0.773 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.600 -2.664 15.161 16.380 hybrid contribution -0.897 -0.055 -1.266 1.553 sum 4.703 -2.719 13.895 14.919 Atomic orbital electron populations 1.22215 1.00399 0.99284 0.99786 1.19135 0.89798 0.93855 0.86328 0.95703 1.21306 1.35377 1.08146 0.90905 0.92536 1.25614 0.95340 0.95516 1.01659 1.70056 1.46155 1.15043 1.24487 0.85639 0.78599 0.78677 0.79147 1.20276 1.20944 1.19479 1.62347 1.59659 1.02470 1.01358 1.22181 0.97201 0.90391 1.00991 1.20702 0.96749 0.98107 0.85154 1.23128 0.96040 0.89248 0.93428 1.21940 0.96393 1.05684 0.99774 1.23003 0.98802 0.92104 0.96588 1.23218 0.92847 1.07918 0.98410 1.23088 0.89671 0.76326 0.82602 1.90621 1.33827 1.43457 1.71677 1.84136 1.43692 1.44464 1.35284 0.94700 0.93400 0.94531 0.92855 0.91796 0.92976 0.96135 0.86864 0.93801 0.81067 0.77262 0.78531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.34 8.36 71.98 0.60 -6.74 16 2 C 0.22 10.56 2.21 44.17 0.10 10.66 16 3 H 0.03 1.35 7.98 -2.39 -0.02 1.33 16 4 C -0.52 -28.01 7.97 25.60 0.20 -27.81 16 5 H 0.06 3.07 6.56 -2.91 -0.02 3.05 16 6 C 0.02 0.98 5.19 84.65 0.44 1.42 16 7 N -0.92 -51.93 12.17 21.45 0.26 -51.67 16 8 Si 0.95 43.19 29.55 68.60 2.03 45.22 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.53 -22.54 4.73 -906.06 -4.29 -26.83 16 13 C 0.04 1.66 8.72 127.69 1.11 2.77 16 14 C 0.12 4.23 4.93 85.56 0.42 4.65 16 15 C 0.04 1.11 5.87 25.01 0.15 1.25 16 16 C -0.22 -5.43 10.76 22.05 0.24 -5.20 16 17 C -0.09 -1.59 10.90 22.69 0.25 -1.34 16 18 C -0.17 -4.27 6.96 22.99 0.16 -4.11 16 19 C 0.42 8.25 11.40 68.58 0.78 9.03 16 20 O -0.52 -15.98 17.89 6.34 0.11 -15.87 16 21 O -0.18 -5.97 9.91 4.67 0.05 -5.93 16 22 H 0.03 1.43 6.81 -2.39 -0.02 1.41 16 23 H 0.05 2.46 6.89 -2.39 -0.02 2.44 16 24 H 0.04 1.66 6.32 -2.39 -0.02 1.64 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.06 2.75 6.43 -2.38 -0.02 2.73 16 27 H 0.05 2.01 6.61 -2.39 -0.02 1.99 16 28 H 0.02 0.83 6.26 -2.39 -0.01 0.81 16 29 H 0.11 3.68 8.00 -2.39 -0.02 3.66 16 30 H 0.04 1.56 6.96 -2.39 -0.02 1.54 16 31 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -68.68 280.14 3.72 -64.95 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.11 Total: 5.53 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 4.45 Total: -15.40 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -4.03 Total: -78.50 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.16 Total: -21.79 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.68 3.72 -64.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161284287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.861 kcal (2) G-P(sol) polarization free energy of solvation -68.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds