Wall clock time and date at job start Mon Mar 30 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47183 * 2 1 4 4 N 1.46904 * 109.47028 * 240.00296 * 2 1 3 5 5 C 1.46906 * 110.99783 * 84.99786 * 4 2 1 6 6 C 1.50702 * 109.46763 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00245 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99793 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00004 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99994 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47311 * 59.99860 * 10 8 6 12 12 H 1.48501 * 109.47122 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47186 * 299.99951 * 10 8 6 14 14 C 1.50702 * 109.47485 * 120.00219 * 2 1 3 15 15 C 1.38630 * 120.05318 * 255.00011 * 14 2 1 16 16 O 1.35905 * 120.02937 * 359.97438 * 15 14 2 17 17 C 1.38773 * 119.94462 * 179.72280 * 15 14 2 18 18 C 1.38175 * 120.05550 * 0.27634 * 17 15 14 19 19 C 1.38180 * 120.10513 * 0.02562 * 18 17 15 20 20 C 1.38633 * 120.05512 * 75.29522 * 14 2 1 21 21 O 1.35904 * 120.02787 * 359.97438 * 20 14 2 22 22 H 1.08998 * 109.47062 * 299.99635 * 1 2 3 23 23 H 1.08996 * 109.47597 * 59.99676 * 1 2 3 24 24 H 1.09004 * 109.46716 * 179.97438 * 1 2 3 25 25 H 1.00896 * 110.99995 * 321.04550 * 4 2 1 26 26 H 1.08997 * 109.46985 * 299.99709 * 5 4 2 27 27 H 1.08998 * 109.47300 * 59.99992 * 5 4 2 28 28 H 0.97004 * 119.99973 * 180.02562 * 9 8 6 29 29 H 0.96705 * 113.99576 * 269.72386 * 16 15 14 30 30 H 1.07997 * 119.97349 * 180.29916 * 17 15 14 31 31 H 1.07993 * 119.94723 * 180.02562 * 18 17 15 32 32 H 1.08000 * 119.96756 * 180.02562 * 19 18 17 33 33 H 0.96703 * 113.99344 * 270.29670 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0823 0.2228 -2.3469 6 6 2.5884 -0.5213 -3.5558 7 1 2.8380 -1.5693 -3.4795 8 6 2.7317 0.1356 -4.7595 9 7 2.4263 1.4114 -4.8528 10 14 3.3583 -0.7868 -6.2581 11 1 2.4371 -1.9093 -6.5694 12 1 3.4206 0.1380 -7.4183 13 1 4.7147 -1.3228 -5.9782 14 6 2.0324 -0.7104 1.2304 15 6 2.5567 0.0178 2.2872 16 8 2.6186 1.3735 2.2144 17 6 3.0134 -0.6384 3.4215 18 6 2.9512 -2.0167 3.4959 19 6 2.4348 -2.7451 2.4413 20 6 1.9767 -2.0937 1.3049 21 8 1.4684 -2.8106 0.2683 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.4495 -1.4978 -1.4101 26 1 1.0869 0.6164 -2.5525 27 1 2.7587 1.0464 -2.1183 28 1 2.5268 1.8734 -5.6998 29 1 3.4429 1.7098 1.8368 30 1 3.4174 -0.0712 4.2470 31 1 3.3067 -2.5255 4.3796 32 1 2.3869 -3.8224 2.5019 33 1 0.5150 -2.9624 0.3253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235516634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:33 Heat of formation + Delta-G solvation = -89.149199 kcal Electronic energy + Delta-G solvation = -16814.296109 eV Core-core repulsion = 14032.113346 eV Total energy + Delta-G solvation = -2782.182763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.26711 -38.71114 -37.55085 -36.51309 -34.89350 -32.23828 -30.14075 -29.81717 -27.92607 -24.80783 -23.73807 -23.13493 -21.70481 -19.73435 -18.59776 -18.25188 -17.32050 -16.80739 -16.55925 -16.01946 -15.56274 -15.47584 -15.09030 -14.92764 -14.19780 -13.92933 -13.56471 -13.43015 -13.09392 -12.90575 -12.70744 -12.66419 -12.48457 -12.35929 -12.02850 -11.58471 -11.31276 -11.08998 -10.66195 -9.55731 -9.44090 -8.98652 -8.21870 -6.33139 0.28613 0.35771 1.40159 1.44071 1.52230 2.40112 2.63118 3.10633 3.16627 3.51124 3.62177 3.91490 4.13546 4.18879 4.33533 4.41509 4.55267 4.72072 4.85034 4.92012 4.94671 5.08033 5.19768 5.29411 5.45849 5.48824 5.54847 5.64448 5.82979 6.04624 6.53295 6.77649 6.79043 6.94342 6.98292 7.37975 8.89266 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033229 B = 0.006127 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.435066 B = 4569.116208 C = 4879.515314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.060 0.940 4 N -0.674 5.674 5 C 0.211 3.789 6 C -0.535 4.535 7 H 0.060 0.940 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.973 3.027 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.270 1.270 14 C -0.135 4.135 15 C 0.106 3.894 16 O -0.508 6.508 17 C -0.158 4.158 18 C -0.088 4.088 19 C -0.161 4.161 20 C 0.129 3.871 21 O -0.496 6.496 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.343 0.657 26 H -0.039 1.039 27 H -0.007 1.007 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 -6.780 16.889 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.078 0.922 4 N -0.307 5.307 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.797 3.203 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.195 1.195 14 C -0.137 4.137 15 C 0.061 3.939 16 O -0.321 6.321 17 C -0.176 4.176 18 C -0.106 4.106 19 C -0.179 4.179 20 C 0.084 3.916 21 O -0.308 6.308 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.164 0.836 26 H -0.021 1.021 27 H 0.011 0.989 28 H 0.074 0.926 29 H 0.262 0.738 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.791 -6.586 16.961 18.212 hybrid contribution -0.726 0.371 -1.402 1.622 sum -1.517 -6.215 15.560 16.823 Atomic orbital electron populations 1.22303 0.95855 1.02463 1.01539 1.20173 0.93295 0.96381 0.88638 0.92214 1.60638 1.57021 1.09665 1.03361 1.19192 0.92724 0.91535 0.88220 1.21499 1.43921 0.97100 0.94793 0.92138 1.25947 0.95557 0.95804 1.02319 1.70088 1.49673 1.10677 1.26971 0.85385 0.79064 0.78245 0.77583 1.19043 1.20599 1.19512 1.20662 1.03409 0.94194 0.95449 1.18376 0.98965 0.83084 0.93521 1.84729 1.44844 1.16996 1.85514 1.21618 1.02126 0.95529 0.98338 1.21223 0.97478 0.92910 0.98990 1.21689 1.02115 1.01675 0.92417 1.18267 0.97864 0.88081 0.87372 1.84889 1.28512 1.73400 1.43967 0.91519 0.94028 0.91138 0.83626 1.02091 0.98904 0.92619 0.73818 0.83268 0.81903 0.83354 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 9.08 71.98 0.65 -4.73 16 2 C 0.13 4.80 2.55 44.17 0.11 4.91 16 3 H 0.06 2.51 6.80 -2.38 -0.02 2.49 16 4 N -0.67 -30.77 5.62 -499.43 -2.81 -33.58 16 5 C 0.21 11.82 5.24 85.56 0.45 12.26 16 6 C -0.53 -31.73 9.32 25.60 0.24 -31.49 16 7 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 10 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 14 C -0.14 -4.41 4.97 -19.68 -0.10 -4.51 16 15 C 0.11 3.05 6.68 22.49 0.15 3.20 16 16 O -0.51 -14.27 12.34 -92.48 -1.14 -15.41 16 17 C -0.16 -3.53 9.98 22.38 0.22 -3.31 16 18 C -0.09 -1.71 10.04 22.24 0.22 -1.49 16 19 C -0.16 -3.65 9.98 22.38 0.22 -3.43 16 20 C 0.13 3.75 6.46 22.49 0.15 3.90 16 21 O -0.50 -14.23 10.34 -92.47 -0.96 -15.19 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.53 7.45 -2.39 -0.02 1.51 16 24 H 0.07 1.97 6.90 -2.39 -0.02 1.95 16 25 H 0.34 15.01 6.53 -89.70 -0.59 14.42 16 26 H -0.04 -2.29 7.44 -2.39 -0.02 -2.31 16 27 H -0.01 -0.44 8.06 -2.39 -0.02 -0.46 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.40 8.71 9.06 -74.05 -0.67 8.04 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.40 7.68 8.25 -74.06 -0.61 7.07 16 Total: -1.00 -72.48 281.11 -0.53 -73.01 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.72 Total: 25.24 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 2.78 Total: -24.12 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.52 Total: -90.96 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -2.10 Total: -30.60 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.48 -0.53 -73.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235516634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.138 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds