Wall clock time and date at job start Mon Mar 30 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00213 * 2 1 4 4 C 1.50708 * 119.99667 * 179.97438 * 2 1 3 5 5 C 1.52994 * 109.52235 * 5.72822 * 4 2 1 6 6 C 1.50699 * 109.47570 * 65.40399 * 5 4 2 7 7 H 1.08003 * 119.99598 * 354.93317 * 6 5 4 8 8 C 1.37878 * 120.00522 * 174.94002 * 6 5 4 9 9 N 1.31509 * 119.99849 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00004 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47397 * 270.00018 * 10 8 6 12 12 H 1.48495 * 109.47325 * 30.00079 * 10 8 6 13 13 H 1.48502 * 109.46602 * 149.99824 * 10 8 6 14 14 C 1.53241 * 109.52288 * 245.60092 * 4 2 1 15 15 C 1.53241 * 108.56701 * 184.42116 * 14 4 2 16 16 C 1.50593 * 109.16398 * 55.61245 * 15 14 4 17 17 O 1.21223 * 119.36028 * 150.93145 * 16 15 14 18 18 N 1.34144 * 121.27933 * 330.90731 * 16 15 14 19 19 C 1.34142 * 122.58796 * 0.54326 * 18 16 15 20 20 O 1.21225 * 119.36024 * 179.45624 * 19 18 16 21 21 H 1.07994 * 119.99755 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.00133 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46811 * 234.99824 * 3 2 1 24 24 H 1.08993 * 109.46890 * 354.99697 * 3 2 1 25 25 H 1.08996 * 109.46848 * 114.99694 * 3 2 1 26 26 H 1.08999 * 109.47422 * 305.39755 * 5 4 2 27 27 H 1.09005 * 109.47173 * 185.39958 * 5 4 2 28 28 H 0.96996 * 120.00094 * 180.02562 * 9 8 6 29 29 H 1.09007 * 109.61714 * 304.14199 * 14 4 2 30 30 H 1.08992 * 109.62073 * 64.69316 * 14 4 2 31 31 H 1.09003 * 109.52599 * 175.51865 * 15 14 4 32 32 H 1.08998 * 109.52085 * 295.70499 * 15 14 4 33 33 H 0.96997 * 118.70391 * 180.54541 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 1.0764 -2.4654 -0.1428 6 6 0.4150 -2.3981 -1.4952 7 1 0.6110 -1.5628 -2.1512 8 6 -0.4403 -3.4028 -1.8952 9 7 -0.6786 -4.4201 -1.0966 10 14 -1.2606 -3.3189 -3.5713 11 1 -2.5561 -2.6027 -3.4532 12 1 -0.3779 -2.5921 -4.5187 13 1 -1.5000 -4.6954 -4.0746 14 6 2.8362 -1.4498 1.3160 15 6 3.6799 -2.7273 1.2483 16 6 4.5645 -2.6716 0.0309 17 8 5.6305 -3.2487 0.0439 18 7 4.1956 -1.9962 -1.0678 19 6 3.0360 -1.3268 -1.1490 20 8 2.7656 -0.7276 -2.1676 21 1 -0.5399 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 2.7556 1.3249 -0.8418 24 1 1.3586 2.1315 -0.0896 25 1 2.6212 1.4025 0.9314 26 1 0.3177 -2.3954 0.6366 27 1 1.6104 -3.4108 -0.0462 28 1 -1.2801 -5.1271 -1.3781 29 1 3.4883 -0.5874 1.4540 30 1 2.1344 -1.5182 2.1471 31 1 4.2968 -2.8043 2.1436 32 1 3.0229 -3.5945 1.1819 33 1 4.7908 -1.9917 -1.8337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238154050.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:40 Heat of formation + Delta-G solvation = -64.505931 kcal Electronic energy + Delta-G solvation = -17748.124817 eV Core-core repulsion = 14967.010666 eV Total energy + Delta-G solvation = -2781.114150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18965 -38.55294 -36.54833 -34.54719 -32.82088 -32.35526 -29.48086 -27.01910 -25.89447 -23.41743 -22.90024 -22.14454 -19.28867 -17.18161 -17.13194 -16.69462 -15.90291 -15.68386 -14.78575 -14.61295 -14.11878 -13.99416 -13.71688 -13.09207 -12.58434 -12.43899 -12.18867 -12.07365 -11.70496 -11.60726 -11.18106 -10.91959 -10.53256 -10.42426 -10.23493 -9.93017 -9.73082 -9.62260 -9.32802 -9.08112 -8.46194 -8.25688 -6.10572 -4.10916 2.07278 2.88913 3.29843 3.34602 3.36906 3.44394 3.47588 4.42201 4.52925 4.94964 5.09359 5.16694 5.26932 5.50279 5.61593 5.66774 5.88560 5.94453 6.01429 6.08568 6.18065 6.36379 6.49666 6.53074 6.70260 7.24462 7.33470 7.45443 7.51027 7.68073 7.84831 7.93279 8.22319 8.44907 8.99056 9.54457 11.00154 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.010677 C = 0.009107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.346773 B = 2621.745299 C = 3073.726443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.116 4.116 4 C -0.033 4.033 5 C 0.033 3.967 6 C -0.523 4.523 7 H 0.074 0.926 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.889 3.111 11 H -0.279 1.279 12 H -0.272 1.272 13 H -0.288 1.288 14 C -0.114 4.114 15 C -0.145 4.145 16 C 0.533 3.467 17 O -0.528 6.528 18 N -0.677 5.677 19 C 0.548 3.452 20 O -0.490 6.490 21 H 0.083 0.917 22 H 0.134 0.866 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 6.555 5.915 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.173 4.173 4 C -0.036 4.036 5 C -0.004 4.004 6 C -0.561 4.561 7 H 0.092 0.908 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.717 3.283 11 H -0.205 1.205 12 H -0.197 1.197 13 H -0.214 1.214 14 C -0.151 4.151 15 C -0.184 4.184 16 C 0.323 3.677 17 O -0.403 6.403 18 N -0.341 5.341 19 C 0.338 3.662 20 O -0.360 6.360 21 H 0.101 0.899 22 H 0.151 0.849 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.138 0.862 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.422 6.429 5.562 10.083 hybrid contribution -0.259 -0.161 -1.441 1.473 sum 5.163 6.268 4.121 9.106 Atomic orbital electron populations 1.24220 0.95460 1.02688 0.97166 1.20833 0.95152 0.92371 1.03808 1.20845 1.00257 0.95147 1.01022 1.20065 0.94778 0.98612 0.90181 1.19328 0.92563 0.89719 0.98747 1.21410 1.26208 1.07347 1.01085 0.90810 1.24952 0.96725 0.95211 0.97150 1.69939 1.36643 1.10382 1.36440 0.86614 0.79896 0.77152 0.84653 1.20534 1.19701 1.21372 1.21847 0.98577 0.96069 0.98634 1.21996 0.98982 1.02158 0.95314 1.20970 0.86356 0.75709 0.84684 1.90713 1.23698 1.42669 1.83254 1.44933 1.22151 1.49072 1.17941 1.20842 0.79693 0.75631 0.90067 1.90661 1.73268 1.40955 1.31130 0.89891 0.84865 0.92135 0.92376 0.92698 0.94376 0.95338 0.92907 0.91506 0.89055 0.87623 0.86176 0.75888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 12.53 29.02 0.36 -2.55 16 2 C -0.12 -2.15 4.03 -101.06 -0.41 -2.56 16 3 C -0.12 -1.73 9.55 36.00 0.34 -1.39 16 4 C -0.03 -0.61 0.40 -156.74 -0.06 -0.67 16 5 C 0.03 0.75 3.41 -27.89 -0.10 0.65 16 6 C -0.52 -13.59 6.21 -34.44 -0.21 -13.81 16 7 H 0.07 2.02 5.98 -52.48 -0.31 1.71 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C -0.11 -1.61 4.79 -26.48 -0.13 -1.73 16 15 C -0.15 -2.04 5.71 -27.81 -0.16 -2.20 16 16 C 0.53 8.93 7.74 -11.32 -0.09 8.85 16 17 O -0.53 -9.93 17.87 5.61 0.10 -9.83 16 18 N -0.68 -11.78 5.09 -11.75 -0.06 -11.84 16 19 C 0.55 10.78 5.52 -11.32 -0.06 10.71 16 20 O -0.49 -11.02 14.84 5.60 0.08 -10.94 16 21 H 0.08 1.32 7.84 -52.49 -0.41 0.90 16 22 H 0.13 2.80 4.89 -52.49 -0.26 2.54 16 23 H 0.06 0.98 6.96 -51.93 -0.36 0.61 16 24 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 25 H 0.05 0.69 7.60 -51.93 -0.39 0.30 16 26 H 0.04 0.88 6.88 -51.93 -0.36 0.52 16 27 H 0.03 0.67 6.32 -51.93 -0.33 0.35 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 0.83 7.39 -51.92 -0.38 0.45 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.12 1.79 6.57 -51.93 -0.34 1.45 16 33 H 0.40 6.47 8.79 -40.82 -0.36 6.11 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -30.48 268.92 -4.61 -35.09 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.89 Total: 4.43 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.60 Total: -3.14 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.68 Total: -36.17 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.48 -4.61 -35.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238154050.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.420 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds