Wall clock time and date at job start Mon Mar 30 2020 03:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47146 * 2 1 4 4 C 1.35983 * 117.00334 * 180.02562 * 3 2 1 5 5 C 1.38721 * 119.99772 * 0.21230 * 4 3 2 6 6 C 1.38108 * 120.00265 * 180.25274 * 5 4 3 7 7 C 1.38716 * 119.99698 * 359.79167 * 6 5 4 8 8 O 1.35985 * 120.00174 * 179.97438 * 7 6 5 9 9 C 1.38678 * 120.00222 * 359.97237 * 7 6 5 10 10 C 1.38157 * 119.99783 * 0.02562 * 9 7 6 11 11 C 1.50703 * 119.99838 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47145 * 219.99453 * 11 10 9 13 13 N 1.46900 * 109.47047 * 339.99676 * 11 10 9 14 14 C 1.50700 * 109.47148 * 99.99431 * 11 10 9 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46986 * 270.00126 * 18 16 14 20 20 H 1.48496 * 109.47029 * 30.00143 * 18 16 14 21 21 H 1.48499 * 109.47352 * 149.99973 * 18 16 14 22 22 H 1.08998 * 109.47556 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46916 * 300.00161 * 1 2 3 24 24 H 1.09000 * 109.46909 * 59.99622 * 1 2 3 25 25 H 1.08995 * 109.47360 * 240.00245 * 2 1 3 26 26 H 1.09001 * 109.47173 * 119.99643 * 2 1 3 27 27 H 1.08006 * 120.00210 * 0.02562 * 5 4 3 28 28 H 1.07999 * 120.00381 * 179.77059 * 6 5 4 29 29 H 0.96703 * 113.99441 * 270.01681 * 8 7 6 30 30 H 1.07997 * 120.00351 * 179.97438 * 9 7 6 31 31 H 1.00907 * 110.99867 * 296.04432 * 13 11 10 32 32 H 1.00896 * 111.00376 * 59.99771 * 13 11 10 33 33 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1995 0.4254 -0.0055 6 6 5.5687 0.6063 -0.0008 7 6 6.0988 1.8881 0.0046 8 8 7.4470 2.0663 0.0097 9 6 5.2541 2.9879 0.0046 10 6 3.8845 2.8069 -0.0002 11 6 2.9665 4.0021 0.0004 12 1 2.1187 3.8088 0.6577 13 7 3.6988 5.1818 0.4799 14 6 2.4692 4.2543 -1.3997 15 1 2.7860 3.6130 -2.2089 16 6 1.6092 5.3031 -1.6473 17 7 1.2231 6.0837 -0.6618 18 14 0.9923 5.6154 -3.3827 19 1 1.9228 6.5390 -4.0801 20 1 0.9240 4.3297 -4.1225 21 1 -0.3603 6.2256 -3.3249 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7867 -0.5726 -0.0094 28 1 6.2266 -0.2502 -0.0009 29 1 7.8338 2.1152 0.8947 30 1 5.6668 3.9859 0.0092 31 1 3.9872 5.0630 1.4396 32 1 4.4901 5.3820 -0.1133 33 1 1.5432 5.9213 0.2394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238291449.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:44 Heat of formation + Delta-G solvation = -58.577962 kcal Electronic energy + Delta-G solvation = -17012.561170 eV Core-core repulsion = 14231.704076 eV Total energy + Delta-G solvation = -2780.857094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95642 -38.08664 -36.17538 -34.42588 -31.59702 -31.39728 -29.34894 -28.22344 -25.60263 -23.73860 -22.60380 -21.39818 -20.25874 -17.82214 -17.73028 -16.70449 -15.88016 -15.68962 -14.95511 -14.48224 -14.17662 -13.72891 -13.47985 -13.34714 -12.91091 -12.70550 -12.30586 -12.06924 -11.66179 -11.42996 -11.21615 -10.96608 -10.70144 -10.42915 -10.31332 -10.04328 -9.82386 -8.93464 -8.29333 -8.17107 -7.49671 -7.40872 -6.08861 -3.89598 1.70574 1.78050 3.52510 3.55860 3.66002 3.71406 4.05446 4.54234 4.68851 5.09273 5.12148 5.18754 5.30214 5.40791 5.50848 5.62237 5.70391 5.93691 5.99725 6.04769 6.10975 6.26711 6.43192 6.49113 6.71987 6.82842 7.09470 7.30499 7.82674 7.98704 8.10140 8.36247 8.72851 8.80441 9.14460 9.91781 11.31084 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.009971 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.767860 B = 2807.452263 C = 3816.629877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.289 6.289 4 C 0.127 3.873 5 C -0.200 4.200 6 C -0.130 4.130 7 C 0.060 3.940 8 O -0.500 6.500 9 C -0.121 4.121 10 C -0.081 4.081 11 C 0.247 3.753 12 H 0.046 0.954 13 N -0.831 5.831 14 C -0.595 4.595 15 H 0.043 0.957 16 C 0.038 3.962 17 N -0.894 5.894 18 Si 1.066 2.934 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.286 1.286 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.378 0.622 30 H 0.128 0.872 31 H 0.301 0.699 32 H 0.326 0.674 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.837 -11.927 3.920 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.202 6.202 4 C 0.081 3.919 5 C -0.219 4.219 6 C -0.149 4.149 7 C 0.016 3.984 8 O -0.309 6.309 9 C -0.140 4.140 10 C -0.084 4.084 11 C 0.138 3.862 12 H 0.064 0.936 13 N -0.359 5.359 14 C -0.633 4.633 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.529 5.529 18 Si 0.895 3.105 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.212 1.212 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.232 0.768 30 H 0.146 0.854 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.941 -10.372 2.277 11.019 hybrid contribution 2.146 -2.084 1.413 3.308 sum 5.087 -12.456 3.690 13.952 Atomic orbital electron populations 1.21735 0.92993 1.02002 1.04032 1.22694 0.95973 0.83175 1.00384 1.86319 1.18540 1.27298 1.88062 1.18861 0.82556 0.93397 0.97064 1.21028 0.93710 0.97829 1.09373 1.20918 0.94579 0.96330 1.03080 1.18286 0.82532 0.92131 1.05453 1.84876 1.17995 1.95276 1.32715 1.21073 0.92330 0.98712 1.01886 1.20873 0.94426 0.95603 0.97520 1.18217 0.89662 0.80604 0.97765 0.93596 1.59451 1.30423 1.42230 1.03798 1.21578 1.32544 1.17511 0.91715 0.93846 1.25567 0.93923 0.92767 1.04891 1.70517 1.42170 1.37301 1.02878 0.83624 0.76520 0.75491 0.74860 1.21691 1.21834 1.21170 0.91035 0.91577 0.91116 0.92645 0.92935 0.85885 0.86174 0.76797 0.85400 0.88801 0.86035 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 37.16 0.38 -1.56 16 2 C 0.05 0.79 5.46 37.16 0.20 0.99 16 3 O -0.29 -5.91 9.36 -19.69 -0.18 -6.09 16 4 C 0.13 2.60 6.65 -39.24 -0.26 2.34 16 5 C -0.20 -3.40 9.03 -39.45 -0.36 -3.75 16 6 C -0.13 -2.12 9.98 -39.45 -0.39 -2.51 16 7 C 0.06 1.04 6.70 -39.24 -0.26 0.78 16 8 O -0.50 -7.51 13.51 -19.69 -0.27 -7.78 16 9 C -0.12 -2.37 9.18 -39.45 -0.36 -2.73 16 10 C -0.08 -1.79 5.02 -104.49 -0.52 -2.31 16 11 C 0.25 6.24 2.12 -70.01 -0.15 6.09 16 12 H 0.05 1.29 7.71 -51.93 -0.40 0.89 16 13 N -0.83 -19.29 7.27 -6.65 -0.05 -19.34 16 14 C -0.59 -17.03 8.71 -34.44 -0.30 -17.33 16 15 H 0.04 1.29 7.74 -52.49 -0.41 0.88 16 16 C 0.04 1.10 5.39 -17.82 -0.10 1.00 16 17 N -0.89 -27.40 13.51 55.43 0.75 -26.66 16 18 Si 1.07 26.09 29.90 -169.99 -5.08 21.01 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.76 7.65 -51.93 -0.40 0.36 16 26 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.12 1.72 6.29 -52.48 -0.33 1.39 16 28 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.38 3.67 9.06 45.56 0.41 4.08 16 30 H 0.13 2.40 6.24 -52.49 -0.33 2.07 16 31 H 0.30 6.11 9.06 -39.29 -0.36 5.75 16 32 H 0.33 7.33 7.28 -39.29 -0.29 7.04 16 33 H 0.29 8.86 6.39 -40.82 -0.26 8.60 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -33.37 280.99 -5.96 -39.32 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -3.24 Total: 14.28 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.12 Total: -18.99 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.70 Total: -45.99 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.45 Total: -13.87 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.37 -5.96 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238291449.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds