Wall clock time and date at job start Mon Mar 30 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35934 * 117.00395 * 2 1 4 4 C 1.38796 * 119.98765 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.01562 * 180.02562 * 4 3 2 6 6 C 1.38910 * 119.98480 * 0.02562 * 5 4 3 7 7 O 1.35797 * 120.01103 * 179.97438 * 6 5 4 8 8 C 1.34818 * 116.99857 * 5.60470 * 7 6 5 9 9 H 1.08001 * 119.99801 * 354.93234 * 8 7 6 10 10 C 1.38635 * 119.99716 * 174.66177 * 8 7 6 11 11 N 1.31575 * 119.99821 * 0.27333 * 10 8 7 12 12 Si 1.86796 * 119.99907 * 180.27260 * 10 8 7 13 13 H 1.48500 * 109.47135 * 60.00096 * 12 10 8 14 14 H 1.48496 * 109.47040 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47314 * 299.99995 * 12 10 8 16 16 C 1.38861 * 119.97456 * 0.25105 * 6 5 4 17 17 C 1.50695 * 120.00714 * 179.72444 * 16 6 5 18 18 H 1.08999 * 109.47011 * 39.99470 * 17 16 6 19 19 C 1.53001 * 109.46968 * 280.00030 * 17 16 6 20 20 N 1.46896 * 109.47250 * 159.99873 * 17 16 6 21 21 C 1.38074 * 119.98448 * 359.49338 * 16 6 5 22 22 H 1.08991 * 109.47501 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47037 * 300.00402 * 1 2 3 24 24 H 1.09001 * 109.46717 * 60.00324 * 1 2 3 25 25 H 1.07999 * 119.99179 * 0.02562 * 4 3 2 26 26 H 1.07997 * 120.00727 * 179.97438 * 5 4 3 27 27 H 0.96999 * 119.99705 * 179.97438 * 11 10 8 28 28 H 1.08997 * 109.47704 * 59.99871 * 19 17 16 29 29 H 1.09001 * 109.47390 * 180.02562 * 19 17 16 30 30 H 1.09004 * 109.47222 * 299.99702 * 19 17 16 31 31 H 1.00899 * 111.00157 * 60.00182 * 20 17 16 32 32 H 1.00903 * 110.99962 * 183.94902 * 20 17 16 33 33 H 1.07999 * 119.99451 * 180.25848 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2901 2.3751 -0.0005 5 6 1.9162 3.6052 -0.0011 6 6 3.3034 3.6781 -0.0016 7 8 3.9199 4.8880 -0.0027 8 6 3.1327 5.9762 0.1142 9 1 2.0582 5.8671 0.1207 10 6 3.7025 7.2346 0.2316 11 7 5.0115 7.3673 0.2236 12 14 2.6118 8.7415 0.4011 13 1 1.7743 8.6118 1.6206 14 1 3.4593 9.9561 0.5102 15 1 1.7349 8.8548 -0.7919 16 6 4.0593 2.5133 -0.0069 17 6 5.5642 2.5915 -0.0137 18 1 5.8892 3.3956 0.6465 19 6 6.0539 2.8703 -1.4362 20 7 6.1230 1.3166 0.4554 21 6 3.4318 1.2834 -0.0010 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2116 2.3182 -0.0005 26 1 1.3277 4.5107 -0.0019 27 1 5.4102 8.2478 0.3054 28 1 5.6393 3.8163 -1.7844 29 1 7.1424 2.9265 -1.4413 30 1 5.7289 2.0662 -2.0965 31 1 5.8360 0.5548 -0.1406 32 1 7.1287 1.3650 0.5213 33 1 4.0196 0.3774 -0.0009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238389152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:13 Heat of formation + Delta-G solvation = -39.748724 kcal Electronic energy + Delta-G solvation = -16862.463537 eV Core-core repulsion = 14082.422940 eV Total energy + Delta-G solvation = -2780.040597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67018 -38.11356 -36.31097 -34.52527 -32.19755 -29.89510 -28.97412 -27.64475 -26.53823 -25.24406 -22.94282 -21.34276 -19.89135 -17.99896 -17.53487 -16.52055 -15.65925 -15.23774 -14.98776 -14.51923 -14.11111 -13.72540 -13.65278 -13.33025 -12.80880 -12.54204 -12.45181 -11.97885 -11.66720 -11.65801 -11.55863 -11.13519 -11.02263 -10.57657 -10.49069 -10.35315 -9.99064 -9.28254 -8.72153 -8.39611 -8.04975 -6.83159 -6.41729 -3.99133 2.08115 2.40162 3.13899 3.15314 3.17641 3.85211 3.99036 4.50899 5.01086 5.10205 5.30290 5.31676 5.39042 5.41347 5.63263 5.71328 5.74038 5.86928 5.93495 6.21241 6.25954 6.36138 6.54697 6.71061 6.76560 7.06093 7.09301 7.22442 7.36468 7.44428 7.67390 7.84141 8.02614 8.09925 9.04361 9.74512 10.76270 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.008178 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.766959 B = 3423.155160 C = 4532.295134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.029 3.971 4 C -0.157 4.157 5 C -0.200 4.200 6 C 0.131 3.869 7 O -0.175 6.175 8 C -0.391 4.391 9 H 0.088 0.912 10 C 0.040 3.960 11 N -0.864 5.864 12 Si 0.937 3.063 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.271 1.271 16 C -0.112 4.112 17 C 0.144 3.856 18 H 0.096 0.904 19 C -0.174 4.174 20 N -0.843 5.843 21 C -0.088 4.088 22 H 0.088 0.912 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.269 0.731 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.333 0.667 32 H 0.336 0.664 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -9.072 -1.654 9.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C -0.015 4.015 4 C -0.176 4.176 5 C -0.220 4.220 6 C 0.078 3.922 7 O -0.080 6.080 8 C -0.468 4.468 9 H 0.106 0.894 10 C -0.164 4.164 11 N -0.499 5.499 12 Si 0.762 3.238 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.196 1.196 16 C -0.114 4.114 17 C 0.033 3.967 18 H 0.114 0.886 19 C -0.234 4.234 20 N -0.372 5.372 21 C -0.107 4.107 22 H 0.107 0.893 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.131 0.869 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.735 -8.858 -0.987 9.663 hybrid contribution -0.561 0.975 -0.838 1.402 sum -4.296 -7.883 -1.824 9.161 Atomic orbital electron populations 1.22826 0.80070 1.02527 1.00735 1.85948 1.19921 1.27680 1.90716 1.18570 0.92052 0.83465 1.07424 1.20855 0.98620 0.92162 1.05953 1.20944 0.94411 0.97463 1.09153 1.19052 0.90655 0.87019 0.95492 1.83978 1.34691 1.09961 1.79332 1.21219 0.90335 0.83000 1.52226 0.89433 1.25208 0.96364 0.98078 0.96707 1.70023 1.09235 1.24334 1.46345 0.85838 0.79037 0.79786 0.79102 1.19618 1.20326 1.19643 1.18607 0.94169 0.90148 1.08489 1.19966 0.90412 0.91637 0.94684 0.88621 1.22490 1.00093 1.02968 0.97811 1.59016 1.14752 1.05439 1.58006 1.19692 0.90597 0.96942 1.03493 0.89348 0.93438 0.93488 0.86934 0.85201 0.92110 0.90808 0.93268 0.93545 0.85337 0.85151 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.33 -5.59 10.50 -19.53 -0.21 -5.80 16 3 C 0.03 0.55 6.69 -39.18 -0.26 0.29 16 4 C -0.16 -3.02 9.03 -39.45 -0.36 -3.38 16 5 C -0.20 -4.41 9.16 -39.41 -0.36 -4.78 16 6 C 0.13 3.14 6.62 -39.10 -0.26 2.89 16 7 O -0.18 -4.83 8.90 -0.06 0.00 -4.83 16 8 C -0.39 -10.78 9.49 30.88 0.29 -10.48 16 9 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 10 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 11 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 12 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 16 C -0.11 -2.39 5.10 -104.45 -0.53 -2.92 16 17 C 0.14 2.76 3.25 -68.87 -0.22 2.53 16 18 H 0.10 2.11 7.85 -51.93 -0.41 1.71 16 19 C -0.17 -3.10 9.46 37.16 0.35 -2.75 16 20 N -0.84 -13.13 8.70 -5.66 -0.05 -13.18 16 21 C -0.09 -1.72 9.19 -39.45 -0.36 -2.08 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.11 1.83 6.29 -52.49 -0.33 1.50 16 26 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 27 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.07 1.53 8.05 -51.93 -0.42 1.12 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.33 4.65 7.29 -39.29 -0.29 4.36 16 32 H 0.34 4.46 9.07 -39.29 -0.36 4.10 16 33 H 0.12 2.15 6.24 -52.49 -0.33 1.82 16 LS Contribution 279.61 15.07 4.21 4.21 Total: -1.00 -30.42 279.61 -5.02 -35.43 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.89 Total: 11.11 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -0.82 Total: -18.27 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.71 Total: -37.30 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.21 Total: -10.62 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.42 -5.02 -35.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238389152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.315 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds