Wall clock time and date at job start Mon Mar 30 2020 03:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47031 * 2 1 4 4 C 1.50696 * 109.47345 * 240.00239 * 2 1 3 5 5 C 1.38258 * 119.92238 * 300.55013 * 4 2 1 6 6 C 1.38250 * 120.14455 * 179.97438 * 5 4 2 7 7 C 1.38564 * 119.99722 * 359.97438 * 6 5 4 8 8 O 1.35996 * 120.07200 * 180.02562 * 7 6 5 9 9 C 1.39156 * 119.85557 * 359.97438 * 7 6 5 10 10 O 1.36000 * 120.07256 * 179.97438 * 9 7 6 11 11 C 1.38245 * 119.92931 * 120.27298 * 4 2 1 12 12 C 1.52997 * 109.47271 * 119.99608 * 2 1 3 13 13 H 1.09003 * 109.46626 * 62.41544 * 12 2 1 14 14 N 1.46896 * 109.47685 * 302.41512 * 12 2 1 15 15 C 1.50704 * 109.47241 * 182.41141 * 12 2 1 16 16 H 1.07995 * 120.00065 * 0.02562 * 15 12 2 17 17 C 1.37871 * 119.99979 * 180.02562 * 15 12 2 18 18 N 1.31520 * 120.00125 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00081 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47170 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47261 * 299.99765 * 19 17 15 22 22 H 1.48504 * 109.46993 * 59.99913 * 19 17 15 23 23 H 1.09001 * 109.46864 * 300.00073 * 1 2 3 24 24 H 1.08998 * 109.47068 * 59.99566 * 1 2 3 25 25 H 1.09003 * 109.47031 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.92918 * 359.97438 * 5 4 2 27 27 H 1.07988 * 119.99677 * 179.97438 * 6 5 4 28 28 H 0.96696 * 114.00086 * 89.99601 * 8 7 6 29 29 H 0.96701 * 113.99848 * 89.99913 * 10 9 7 30 30 H 1.07995 * 120.00060 * 0.02677 * 11 4 2 31 31 H 1.00904 * 110.99697 * 305.89310 * 14 12 2 32 32 H 1.00897 * 110.99786 * 69.83523 * 14 12 2 33 33 H 0.96998 * 119.99996 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 6 1.6880 -2.0306 -1.4535 6 6 2.1459 -2.6866 -2.5810 7 6 2.9513 -2.0206 -3.4908 8 8 3.4022 -2.6642 -4.6008 9 6 3.2970 -0.6914 -3.2668 10 8 4.0876 -0.0336 -4.1566 11 6 2.8317 -0.0387 -2.1366 12 6 2.0400 -0.7211 1.2493 13 1 1.7124 -1.7606 1.2279 14 7 1.5034 -0.0632 2.4480 15 6 3.5459 -0.6696 1.2795 16 1 4.0851 -0.1718 0.4872 17 6 4.2350 -1.2578 2.3187 18 7 3.5783 -1.8635 3.2838 19 14 6.1016 -1.1945 2.3558 20 1 6.5966 -1.8944 3.5685 21 1 6.6437 -1.8598 1.1439 22 1 6.5484 0.2214 2.3850 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.0600 -2.5507 -0.7453 27 1 1.8758 -3.7180 -2.7527 28 1 2.8149 -2.5883 -5.3652 29 1 3.5989 0.4181 -4.8582 30 1 3.0959 0.9938 -1.9620 31 1 1.7120 0.9240 2.4426 32 1 0.5108 -0.2224 2.5341 33 1 2.6091 -1.8967 3.2644 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897480.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:21 Heat of formation + Delta-G solvation = -98.730363 kcal Electronic energy + Delta-G solvation = -17026.360031 eV Core-core repulsion = 14243.761798 eV Total energy + Delta-G solvation = -2782.598233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.22805 -38.96133 -37.87945 -36.65729 -34.11292 -32.06660 -31.06087 -29.09738 -27.81460 -24.87578 -23.89488 -23.21731 -21.17191 -19.69752 -18.92344 -18.35387 -17.20141 -16.99740 -16.39071 -15.87286 -15.66016 -15.56069 -15.31613 -14.64897 -14.30160 -13.91988 -13.66411 -13.25511 -13.06967 -12.93124 -12.62978 -12.57141 -12.24970 -11.95346 -11.90847 -11.57037 -11.11694 -10.57130 -10.38431 -9.80462 -9.52890 -8.95884 -8.28582 -6.12894 0.24586 0.31541 1.52509 1.59026 1.77308 2.62629 2.63399 3.12462 3.25358 3.38547 3.83872 3.89323 4.19263 4.33453 4.37802 4.43897 4.54086 4.56776 4.87465 4.91499 4.96978 5.05947 5.17170 5.32415 5.35514 5.43327 5.74731 5.84334 6.07428 6.33205 6.64879 6.78576 6.89644 6.98670 7.15813 7.75314 9.06660 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.009081 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.619996 B = 3082.763583 C = 3788.075478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 H 0.059 0.941 4 C -0.034 4.034 5 C -0.116 4.116 6 C -0.128 4.128 7 C 0.058 3.942 8 O -0.498 6.498 9 C 0.077 3.923 10 O -0.500 6.500 11 C -0.145 4.145 12 C 0.223 3.777 13 H 0.004 0.996 14 N -0.843 5.843 15 C -0.606 4.606 16 H 0.031 0.969 17 C -0.011 4.011 18 N -0.925 5.925 19 Si 1.095 2.905 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.124 0.876 27 H 0.149 0.851 28 H 0.404 0.596 29 H 0.405 0.595 30 H 0.126 0.874 31 H 0.328 0.672 32 H 0.319 0.681 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 2.988 -14.749 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.035 4.035 5 C -0.134 4.134 6 C -0.147 4.147 7 C 0.013 3.987 8 O -0.310 6.310 9 C 0.031 3.969 10 O -0.312 6.312 11 C -0.163 4.163 12 C 0.114 3.886 13 H 0.022 0.978 14 N -0.372 5.372 15 C -0.645 4.645 16 H 0.050 0.950 17 C -0.215 4.215 18 N -0.561 5.561 19 Si 0.920 3.080 20 H -0.211 1.211 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.142 0.858 27 H 0.166 0.834 28 H 0.262 0.738 29 H 0.263 0.737 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.641 1.683 -12.753 13.676 hybrid contribution -2.428 1.313 -1.934 3.370 sum -7.069 2.997 -14.688 16.573 Atomic orbital electron populations 1.21826 0.93294 1.02083 1.02175 1.20929 0.96097 0.98592 0.93798 0.92284 1.19733 0.95238 0.94383 0.94169 1.20958 1.01200 0.94132 0.97133 1.21456 0.97473 1.00988 0.94763 1.18706 0.98342 0.90574 0.91061 1.84874 1.50518 1.74313 1.21270 1.18775 0.95013 0.90629 0.92433 1.84868 1.34529 1.70093 1.41708 1.21300 0.98950 1.01006 0.95080 1.18986 0.93633 0.91882 0.84131 0.97813 1.59155 1.17125 1.16764 1.44125 1.22060 0.92352 1.40269 1.09819 0.95023 1.26618 1.09149 0.93018 0.92691 1.70668 1.11613 1.40644 1.33175 0.83219 0.72009 0.76925 0.75814 1.21092 1.21205 1.20171 0.91950 0.91540 0.92576 0.85797 0.83375 0.73799 0.73694 0.85566 0.85966 0.86789 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.62 71.98 0.62 -3.34 16 2 C -0.07 -2.75 2.20 -11.54 -0.03 -2.77 16 3 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 4 C -0.03 -1.27 3.97 -19.86 -0.08 -1.35 16 5 C -0.12 -4.05 8.68 22.28 0.19 -3.86 16 6 C -0.13 -3.99 9.98 22.35 0.22 -3.77 16 7 C 0.06 1.81 6.72 22.57 0.15 1.96 16 8 O -0.50 -13.08 13.29 -79.64 -1.06 -14.14 16 9 C 0.08 2.49 6.72 22.57 0.15 2.64 16 10 O -0.50 -14.12 13.29 -79.68 -1.06 -15.18 16 11 C -0.14 -5.11 9.60 22.35 0.21 -4.89 16 12 C 0.22 10.49 1.72 44.17 0.08 10.56 16 13 H 0.00 0.21 7.20 -2.39 -0.02 0.19 16 14 N -0.84 -37.06 7.52 -171.80 -1.29 -38.35 16 15 C -0.61 -33.77 8.21 25.60 0.21 -33.56 16 16 H 0.03 1.81 7.52 -2.91 -0.02 1.78 16 17 C -0.01 -0.66 5.39 84.65 0.46 -0.21 16 18 N -0.92 -57.14 13.51 21.45 0.29 -56.85 16 19 Si 1.09 53.39 29.90 68.60 2.05 55.44 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 23 H 0.06 1.68 6.88 -2.39 -0.02 1.66 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.59 7.35 -2.39 -0.02 1.58 16 26 H 0.12 4.22 7.07 -2.91 -0.02 4.20 16 27 H 0.15 3.83 8.06 -2.92 -0.02 3.80 16 28 H 0.40 5.63 9.06 -74.06 -0.67 4.96 16 29 H 0.40 6.35 9.06 -74.06 -0.67 5.68 16 30 H 0.13 4.29 7.94 -2.91 -0.02 4.27 16 31 H 0.33 13.79 8.97 -89.69 -0.80 12.98 16 32 H 0.32 11.97 7.66 -89.70 -0.69 11.28 16 33 H 0.28 17.12 6.39 -92.71 -0.59 16.53 16 Total: -1.00 -72.49 279.81 -0.36 -72.85 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -1.48 Total: 34.81 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 2.19 Total: -38.58 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -1.00 Total: -95.20 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -2.12 Total: -29.31 kcal Atomic # 14 Polarization: 53.39 SS G_CDS: 2.05 Total: 55.44 kcal Total: -72.49 -0.36 -72.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897480.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.879 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds