Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 6 6 C 1.50698 * 109.47592 * 179.97438 * 4 2 1 7 7 H 1.07998 * 120.00218 * 119.99906 * 6 4 2 8 8 C 1.37875 * 120.00046 * 300.00559 * 6 4 2 9 9 N 1.31519 * 120.00287 * 180.02562 * 8 6 4 10 10 Si 1.86793 * 120.00086 * 359.97438 * 8 6 4 11 11 H 1.48505 * 109.47149 * 90.00125 * 10 8 6 12 12 H 1.48501 * 109.47501 * 210.00469 * 10 8 6 13 13 H 1.48505 * 109.47293 * 330.00090 * 10 8 6 14 14 N 1.46496 * 109.47337 * 300.00145 * 4 2 1 15 15 C 1.34774 * 120.00029 * 84.99515 * 14 4 2 16 16 O 1.21697 * 120.00049 * 0.02562 * 15 14 4 17 17 C 1.46666 * 120.00162 * 180.02562 * 15 14 4 18 18 C 1.36544 * 125.98572 * 179.71889 * 17 15 14 19 19 C 1.40369 * 106.70576 * 179.85012 * 18 17 15 20 20 C 1.35139 * 107.11377 * 0.40814 * 19 18 17 21 21 O 1.33931 * 108.76557 * 359.74262 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.96996 * 119.99974 * 180.02562 * 9 8 6 30 30 H 0.96994 * 120.00228 * 264.99972 * 14 4 2 31 31 H 1.07998 * 126.64731 * 359.95997 * 18 17 15 32 32 H 1.07991 * 126.44442 * 180.15592 * 19 18 17 33 33 H 1.07997 * 125.61607 * 179.70708 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 1.6768 -1.7489 1.2491 6 6 3.5470 -0.7218 1.2488 7 1 4.0874 -0.2542 2.0586 8 6 4.2360 -1.3191 0.2147 9 7 5.5512 -1.3201 0.2146 10 14 3.3015 -2.1282 -1.1857 11 1 3.0536 -1.1303 -2.2572 12 1 4.1037 -3.2522 -1.7320 13 1 2.0040 -2.6456 -0.6814 14 7 1.5518 -0.0307 2.4453 15 6 0.3298 -0.3166 2.9368 16 8 -0.3678 -1.1486 2.3872 17 6 -0.1593 0.3751 4.1341 18 6 -1.3730 0.1859 4.7304 19 6 -1.4165 1.0463 5.8386 20 6 -0.2460 1.7211 5.8644 21 8 0.5089 1.3138 4.8358 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 6.0358 -1.7399 -0.5131 30 1 2.1078 0.6322 2.8836 31 1 -2.1484 -0.4952 4.4122 32 1 -2.2336 1.1524 6.5367 33 1 0.0343 2.4665 6.5940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259910757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = -22.612600 kcal Electronic energy + Delta-G solvation = -17233.586991 eV Core-core repulsion = 14454.289471 eV Total energy + Delta-G solvation = -2779.297519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.53294 -39.19984 -36.06974 -33.10902 -32.42568 -32.25391 -29.75266 -27.58839 -26.26522 -23.53104 -22.09784 -21.61357 -20.25713 -19.01548 -18.43154 -16.58017 -16.21117 -15.75582 -15.55573 -14.86129 -14.30652 -13.46334 -13.32002 -12.93611 -12.89705 -12.73022 -12.69062 -12.60084 -11.83961 -11.35292 -11.13833 -10.92407 -10.55868 -10.37842 -9.99222 -9.96724 -9.70003 -9.32092 -9.20551 -8.75107 -8.61460 -8.09774 -6.21728 -4.23406 1.28964 2.44704 2.89740 3.23008 3.34793 3.38848 3.65283 3.90004 4.30801 4.86984 4.96528 5.11597 5.25553 5.73184 5.79078 5.82764 5.91552 5.96620 6.01970 6.34875 6.38821 6.51762 6.56447 6.73223 6.85380 6.95081 7.00066 7.07369 7.22379 7.29627 7.46631 8.10244 8.46369 8.69863 8.81793 9.38417 10.90202 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036708 B = 0.007417 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.588078 B = 3774.299630 C = 4006.391557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.246 3.754 5 H 0.052 0.948 6 C -0.530 4.530 7 H 0.081 0.919 8 C 0.082 3.918 9 N -0.891 5.891 10 Si 0.877 3.123 11 H -0.274 1.274 12 H -0.293 1.293 13 H -0.260 1.260 14 N -0.683 5.683 15 C 0.587 3.413 16 O -0.530 6.530 17 C -0.060 4.060 18 C -0.139 4.139 19 C -0.226 4.226 20 C -0.020 4.020 21 O -0.162 6.162 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.267 0.733 30 H 0.400 0.600 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 6.363 7.527 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.187 4.187 4 C 0.142 3.858 5 H 0.069 0.931 6 C -0.568 4.568 7 H 0.099 0.901 8 C -0.122 4.122 9 N -0.527 5.527 10 Si 0.707 3.293 11 H -0.201 1.201 12 H -0.221 1.221 13 H -0.185 1.185 14 N -0.330 5.330 15 C 0.371 3.629 16 O -0.410 6.410 17 C -0.112 4.112 18 C -0.159 4.159 19 C -0.245 4.245 20 C -0.090 4.090 21 O -0.057 6.057 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.234 0.766 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.666 5.798 6.917 13.972 hybrid contribution -0.322 -0.051 -0.412 0.526 sum -10.987 5.747 6.504 14.002 Atomic orbital electron populations 1.21928 0.96373 1.01531 0.99790 1.21837 0.94259 0.97615 0.99759 1.21637 1.02705 0.95179 0.99136 1.19257 0.94879 0.92128 0.79488 0.93064 1.20952 0.87805 1.38575 1.09454 0.90055 1.24771 0.94690 0.95067 0.97677 1.69861 1.06162 1.43861 1.32842 0.86982 0.80334 0.79113 0.82898 1.20058 1.22073 1.18466 1.46112 1.15253 1.41786 1.29805 1.16611 0.82815 0.82251 0.81221 1.90845 1.57102 1.33961 1.59117 1.22633 0.94097 0.96479 0.98040 1.21917 0.97100 1.01201 0.95712 1.21802 0.99944 1.01206 1.01562 1.24326 0.91341 1.01665 0.91690 1.84106 1.42627 1.45088 1.33832 0.93292 0.92581 0.94724 0.92106 0.93903 0.90899 0.94902 0.92263 0.76570 0.82520 0.83004 0.77732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.71 37.16 0.29 -2.51 16 2 C -0.12 -2.53 2.29 -90.63 -0.21 -2.74 16 3 C -0.13 -2.58 8.79 37.16 0.33 -2.25 16 4 C 0.25 5.77 1.58 -69.09 -0.11 5.66 16 5 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 6 C -0.53 -14.02 8.05 -34.44 -0.28 -14.29 16 7 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 8 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16 9 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 10 Si 0.88 21.46 24.37 -169.99 -4.14 17.32 16 11 H -0.27 -6.50 6.87 56.52 0.39 -6.11 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 14 N -0.68 -13.94 4.19 -56.25 -0.24 -14.17 16 15 C 0.59 11.59 6.14 -12.86 -0.08 11.51 16 16 O -0.53 -11.72 13.98 5.19 0.07 -11.65 16 17 C -0.06 -0.99 7.13 -36.79 -0.26 -1.25 16 18 C -0.14 -1.98 10.62 -39.39 -0.42 -2.40 16 19 C -0.23 -2.53 10.88 -39.88 -0.43 -2.96 16 20 C -0.02 -0.22 12.08 29.63 0.36 0.14 16 21 O -0.16 -2.36 10.40 5.00 0.05 -2.31 16 22 H 0.05 0.97 5.78 -51.93 -0.30 0.67 16 23 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.42 3.27 -51.93 -0.17 1.25 16 26 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 27 H 0.07 1.58 7.22 -51.93 -0.37 1.20 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.40 7.55 8.30 -40.82 -0.34 7.21 16 31 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.21 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 271.19 15.07 4.09 4.09 Total: -1.00 -30.29 271.19 -4.33 -34.62 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.03 Total: 6.28 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.91 Total: -8.95 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.54 Total: -39.39 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.12 Total: -13.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.29 -4.33 -34.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259910757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.012 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds