Wall clock time and date at job start Mon Mar 30 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47007 * 2 1 4 4 C 1.46900 * 110.99866 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47552 * 35.00924 * 4 3 2 6 6 C 1.50692 * 109.47514 * 275.00324 * 4 3 2 7 7 H 1.08001 * 120.00454 * 125.31199 * 6 4 3 8 8 C 1.37878 * 120.00206 * 305.31525 * 6 4 3 9 9 N 1.31517 * 119.99830 * 9.54406 * 8 6 4 10 10 Si 1.86799 * 120.00174 * 189.54716 * 8 6 4 11 11 H 1.48492 * 109.47413 * 59.99747 * 10 8 6 12 12 H 1.48504 * 109.47057 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47280 * 299.99487 * 10 8 6 14 14 C 1.50707 * 109.46826 * 155.00164 * 4 3 2 15 15 C 1.38259 * 119.92283 * 212.64454 * 14 4 3 16 16 C 1.38240 * 120.13867 * 180.02562 * 15 14 4 17 17 C 1.38561 * 120.00353 * 359.97438 * 16 15 14 18 18 O 1.35998 * 120.07314 * 180.02562 * 17 16 15 19 19 C 1.39146 * 119.85600 * 0.02562 * 17 16 15 20 20 O 1.35995 * 120.07723 * 179.97438 * 19 17 16 21 21 C 1.38235 * 119.92585 * 32.37452 * 14 4 3 22 22 H 1.09006 * 109.47099 * 60.00019 * 1 2 3 23 23 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47470 * 299.99649 * 1 2 3 25 25 H 1.08995 * 109.47334 * 120.00420 * 2 1 3 26 26 H 1.08999 * 109.47470 * 240.00351 * 2 1 3 27 27 H 1.00895 * 111.00324 * 303.95115 * 3 2 1 28 28 H 0.97003 * 120.00217 * 180.02562 * 9 8 6 29 29 H 1.07991 * 119.92661 * 359.97438 * 15 14 4 30 30 H 1.08002 * 119.99436 * 179.97438 * 16 15 14 31 31 H 0.96705 * 113.99520 * 90.00218 * 18 17 16 32 32 H 0.96704 * 113.99904 * 89.99529 * 20 19 17 33 33 H 1.08001 * 120.00280 * 0.02562 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8741 0.5924 -0.5887 6 6 3.9930 1.3139 1.4161 7 1 4.7035 0.5437 1.6777 8 6 3.5480 2.1964 2.3775 9 7 2.5497 3.0101 2.1116 10 14 4.3632 2.2362 4.0578 11 1 5.8016 2.5704 3.9024 12 1 3.7042 3.2638 4.9035 13 1 4.2311 0.9056 4.7037 14 6 3.9561 2.7248 -0.5998 15 6 5.1368 2.7676 -1.3179 16 6 5.5706 3.9584 -1.8701 17 6 4.8214 5.1122 -1.7051 18 8 5.2465 6.2843 -2.2483 19 6 3.6331 5.0691 -0.9825 20 8 2.8944 6.1990 -0.8173 21 6 3.2010 3.8711 -0.4362 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.6442 1.9013 -0.7813 28 1 2.2368 3.6312 2.7878 29 1 5.7218 1.8691 -1.4468 30 1 6.4935 3.9892 -2.4302 31 1 4.9251 6.4408 -3.1468 32 1 2.2365 6.3437 -1.5111 33 1 2.2771 3.8341 0.1218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260259741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:27 Heat of formation + Delta-G solvation = -74.838097 kcal Electronic energy + Delta-G solvation = -17144.609120 eV Core-core repulsion = 14363.046934 eV Total energy + Delta-G solvation = -2781.562187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91720 -38.44953 -37.69752 -36.35111 -34.33347 -32.01711 -30.68427 -29.23302 -27.72733 -24.43027 -23.56068 -22.41319 -21.94041 -19.53172 -18.65115 -17.87318 -17.11125 -16.89282 -16.43063 -15.94829 -15.53865 -15.18702 -14.97386 -14.54097 -14.14239 -13.89819 -13.41898 -13.01575 -12.98652 -12.76982 -12.50363 -12.42853 -12.29399 -12.08736 -11.81631 -11.47089 -11.31292 -10.83284 -10.46157 -9.44781 -9.09593 -8.58430 -7.82307 -6.07862 0.46384 0.64307 1.40899 1.44563 1.48196 2.47777 2.91838 3.27968 3.37175 3.44228 3.83921 4.25762 4.39074 4.48527 4.62009 4.71411 4.81435 4.87196 5.00471 5.07464 5.16268 5.35214 5.38186 5.48497 5.58038 5.65137 5.83077 6.02465 6.21352 6.26255 6.58444 6.77724 7.03388 7.14108 7.27926 7.59887 9.05225 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.010069 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.175055 B = 2780.240351 C = 3410.154662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 N -0.654 5.654 4 C 0.251 3.749 5 H -0.001 1.001 6 C -0.544 4.544 7 H 0.042 0.958 8 C 0.055 3.945 9 N -0.835 5.835 10 Si 0.923 3.077 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.054 4.054 15 C -0.130 4.130 16 C -0.140 4.140 17 C 0.048 3.952 18 O -0.500 6.500 19 C 0.051 3.949 20 O -0.503 6.503 21 C -0.102 4.102 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.012 0.988 27 H 0.311 0.689 28 H 0.250 0.750 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.399 0.601 32 H 0.397 0.603 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 0.941 -10.174 10.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 N -0.285 5.285 4 C 0.144 3.856 5 H 0.016 0.984 6 C -0.582 4.582 7 H 0.060 0.940 8 C -0.152 4.152 9 N -0.468 5.468 10 Si 0.750 3.250 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 C -0.056 4.056 15 C -0.149 4.149 16 C -0.158 4.158 17 C 0.003 3.997 18 O -0.312 6.312 19 C 0.006 3.994 20 O -0.314 6.314 21 C -0.121 4.121 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.030 0.970 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.257 0.743 32 H 0.254 0.746 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.698 1.293 -8.367 8.495 hybrid contribution 0.203 -0.245 -0.414 0.522 sum -0.495 1.048 -8.781 8.857 Atomic orbital electron populations 1.21630 0.94342 1.01507 1.01468 1.21740 0.95821 0.90642 0.98201 1.60641 1.08840 1.11600 1.47445 1.18045 0.85624 0.88521 0.93455 0.98361 1.21020 1.26818 1.16074 0.94338 0.93988 1.25326 0.94400 0.95505 0.99950 1.70087 1.22905 1.20538 1.33268 0.86202 0.78940 0.77555 0.82280 1.20817 1.21308 1.20036 1.20480 0.94657 0.97490 0.92959 1.21061 0.96481 0.98267 0.99046 1.21297 1.00835 0.90971 1.02728 1.18732 0.94508 0.86243 1.00190 1.84852 1.74712 1.36188 1.35414 1.19094 0.92505 0.86581 1.01172 1.84855 1.53153 1.40325 1.53115 1.21771 1.03148 0.90226 0.97003 0.92505 0.91235 0.93764 0.93803 0.96970 0.87140 0.94049 0.85356 0.83502 0.74348 0.74570 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 10.17 71.98 0.73 -3.45 16 2 C 0.07 2.55 6.20 86.30 0.53 3.08 16 3 N -0.65 -29.03 4.33 -499.37 -2.16 -31.20 16 4 C 0.25 11.95 2.48 43.42 0.11 12.06 16 5 H 0.00 -0.06 7.72 -2.39 -0.02 -0.08 16 6 C -0.54 -29.32 8.62 25.60 0.22 -29.10 16 7 H 0.04 2.29 7.83 -2.91 -0.02 2.27 16 8 C 0.05 2.96 5.20 84.65 0.44 3.40 16 9 N -0.83 -45.61 9.24 21.45 0.20 -45.41 16 10 Si 0.92 44.06 29.55 68.60 2.03 46.08 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 14 C -0.05 -2.43 4.65 -19.86 -0.09 -2.52 16 15 C -0.13 -5.05 9.68 22.28 0.22 -4.83 16 16 C -0.14 -4.84 9.98 22.35 0.22 -4.61 16 17 C 0.05 1.74 6.72 22.57 0.15 1.89 16 18 O -0.50 -15.31 13.29 -79.66 -1.06 -16.37 16 19 C 0.05 2.06 6.72 22.57 0.15 2.21 16 20 O -0.50 -18.29 13.29 -79.63 -1.06 -19.35 16 21 C -0.10 -4.58 7.59 22.35 0.17 -4.41 16 22 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.90 8.00 -2.39 -0.02 1.88 16 26 H 0.01 0.44 8.06 -2.39 -0.02 0.43 16 27 H 0.31 12.91 7.66 -89.70 -0.69 12.22 16 28 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.13 4.53 8.06 -2.92 -0.02 4.50 16 30 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.40 7.41 9.06 -74.05 -0.67 6.74 16 32 H 0.40 9.56 9.06 -74.05 -0.67 8.89 16 33 H 0.15 7.29 5.58 -2.91 -0.02 7.28 16 Total: -1.00 -64.41 280.86 -0.08 -64.49 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.88 Total: 28.03 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 2.85 Total: -26.28 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.97 Total: -76.61 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -2.12 Total: -35.72 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.41 -0.08 -64.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260259741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.344 kcal (2) G-P(sol) polarization free energy of solvation -64.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds