Wall clock time and date at job start Mon Mar 30 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 110.99698 * 2 1 4 4 C 1.46900 * 111.00258 * 123.95977 * 2 1 3 5 5 H 1.08998 * 109.47234 * 147.76919 * 4 2 1 6 6 C 1.50694 * 109.47007 * 27.76674 * 4 2 1 7 7 H 1.08000 * 120.00614 * 246.38993 * 6 4 2 8 8 C 1.37881 * 120.00053 * 66.39679 * 6 4 2 9 9 N 1.31515 * 119.99900 * 181.04916 * 8 6 4 10 10 Si 1.86799 * 119.99761 * 1.05207 * 8 6 4 11 11 H 1.48499 * 109.47265 * 94.26147 * 10 8 6 12 12 H 1.48499 * 109.46986 * 214.25898 * 10 8 6 13 13 H 1.48498 * 109.47420 * 334.25763 * 10 8 6 14 14 C 1.50696 * 109.46550 * 267.76946 * 4 2 1 15 15 C 1.38257 * 119.93240 * 51.26676 * 14 4 2 16 16 C 1.38238 * 120.14964 * 180.02562 * 15 14 4 17 17 C 1.38563 * 119.99954 * 0.02562 * 16 15 14 18 18 O 1.35993 * 120.07250 * 180.02562 * 17 16 15 19 19 C 1.39158 * 119.85425 * 0.26329 * 17 16 15 20 20 O 1.35998 * 120.07434 * 179.72840 * 19 17 16 21 21 C 1.38243 * 119.92580 * 231.28151 * 14 4 2 22 22 H 1.08999 * 109.47007 * 297.76792 * 1 2 3 23 23 H 1.08995 * 109.47568 * 57.76858 * 1 2 3 24 24 H 1.09002 * 109.47118 * 177.77158 * 1 2 3 25 25 H 1.09010 * 109.47116 * 173.70219 * 3 2 1 26 26 H 1.09001 * 109.47299 * 293.70416 * 3 2 1 27 27 H 1.09000 * 109.46995 * 53.70975 * 3 2 1 28 28 H 0.97001 * 119.99495 * 180.02562 * 9 8 6 29 29 H 1.08002 * 119.92148 * 359.97438 * 15 14 4 30 30 H 1.08003 * 120.00041 * 179.97438 * 16 15 14 31 31 H 0.96697 * 114.00155 * 89.99545 * 18 17 16 32 32 H 0.96696 * 113.99621 * 90.00354 * 20 19 17 33 33 H 1.08001 * 120.00353 * 359.97438 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 2.9373 -1.2361 0.8543 6 6 1.0019 -1.8287 1.5304 7 1 0.5027 -1.7744 2.4866 8 6 0.7300 -2.8706 0.6692 9 7 -0.1524 -3.7867 1.0033 10 14 1.6150 -2.9808 -0.9721 11 1 2.8084 -3.8537 -0.8334 12 1 0.6989 -3.5532 -1.9910 13 1 2.0414 -1.6232 -1.3968 14 6 2.2271 0.1607 2.3030 15 6 1.2170 1.0057 2.7237 16 6 1.4247 1.8581 3.7920 17 6 2.6477 1.8672 4.4434 18 8 2.8535 2.7048 5.4949 19 6 3.6664 1.0210 4.0162 20 8 4.8703 1.0302 4.6488 21 6 3.4493 0.1643 2.9490 22 1 -0.3633 0.4788 0.9093 23 1 -0.3634 0.5481 -0.8692 24 1 -0.3633 -1.0269 -0.0400 25 1 3.0793 1.3446 0.1127 26 1 1.7398 1.8587 -0.9410 27 1 1.5577 1.9286 0.8283 28 1 -0.3434 -4.5199 0.3976 29 1 0.2637 1.0005 2.2161 30 1 0.6341 2.5175 4.1184 31 1 2.6226 2.3231 6.3528 32 1 4.9318 0.4078 5.3862 33 1 4.2368 -0.4969 2.6186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260629949.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:50 Heat of formation + Delta-G solvation = -56.583395 kcal Electronic energy + Delta-G solvation = -17348.908318 eV Core-core repulsion = 14568.137714 eV Total energy + Delta-G solvation = -2780.770603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36584 -39.39115 -37.84143 -36.54266 -34.44431 -31.95499 -30.55122 -29.28112 -27.83273 -25.32425 -23.83854 -23.28851 -21.32519 -19.62615 -18.90649 -18.50695 -17.24785 -17.17056 -16.47851 -15.93000 -15.74254 -15.54340 -15.04330 -14.60203 -14.55030 -13.99512 -13.76557 -13.59246 -12.95803 -12.74613 -12.69415 -12.41225 -12.21277 -11.95564 -11.91996 -11.59238 -11.37933 -11.09244 -10.66676 -9.78423 -9.26647 -8.77713 -8.27450 -6.33325 0.24166 0.32067 1.44381 1.51723 1.84952 2.51305 2.59006 3.04107 3.19702 3.27719 3.66518 3.94551 4.00676 4.31030 4.47858 4.54830 4.70942 4.77688 4.84466 4.94124 4.95479 5.08717 5.17838 5.29353 5.34745 5.42920 5.53599 5.75515 5.82358 6.11926 6.45939 6.59007 6.63023 6.80151 6.97952 7.35440 8.85254 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032738 B = 0.008132 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.059495 B = 3442.180004 C = 3593.026207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.547 5.547 3 C 0.019 3.981 4 C 0.213 3.787 5 H 0.044 0.956 6 C -0.510 4.510 7 H 0.036 0.964 8 C 0.041 3.959 9 N -0.938 5.938 10 Si 0.909 3.091 11 H -0.293 1.293 12 H -0.300 1.300 13 H -0.184 1.184 14 C -0.066 4.066 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.063 3.937 18 O -0.497 6.497 19 C 0.078 3.922 20 O -0.498 6.498 21 C -0.142 4.142 22 H 0.024 0.976 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.265 0.735 29 H 0.127 0.873 30 H 0.148 0.852 31 H 0.404 0.596 32 H 0.404 0.596 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 10.523 4.703 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.271 5.271 3 C -0.129 4.129 4 C 0.106 3.894 5 H 0.062 0.938 6 C -0.548 4.548 7 H 0.054 0.946 8 C -0.159 4.159 9 N -0.577 5.577 10 Si 0.733 3.267 11 H -0.220 1.220 12 H -0.227 1.227 13 H -0.105 1.105 14 C -0.068 4.068 15 C -0.133 4.133 16 C -0.149 4.149 17 C 0.018 3.982 18 O -0.309 6.309 19 C 0.033 3.967 20 O -0.311 6.311 21 C -0.161 4.161 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.166 0.834 31 H 0.262 0.738 32 H 0.263 0.737 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.402 10.985 3.373 12.698 hybrid contribution -0.472 -1.130 0.931 1.539 sum 4.930 9.854 4.305 11.830 Atomic orbital electron populations 1.22291 0.88050 1.02021 0.98697 1.62933 1.08469 1.13017 1.42694 1.22533 0.99694 0.89741 1.00887 1.18710 0.95911 0.90292 0.84459 0.93828 1.20862 1.23793 1.07075 1.03081 0.94597 1.25643 0.94617 0.94205 1.01484 1.70044 1.34924 1.13990 1.38694 0.86406 0.78033 0.82282 0.79954 1.21988 1.22739 1.10484 1.20570 0.92925 0.95902 0.97355 1.21188 0.99296 0.95864 0.96947 1.21449 0.96787 0.99843 0.96833 1.18671 0.92262 0.94293 0.92967 1.84831 1.88638 1.40294 1.17127 1.18722 0.85970 0.96372 0.95657 1.84819 1.29879 1.65604 1.50755 1.21336 0.97608 0.99613 0.97582 0.95751 0.92008 0.92227 0.92540 0.91051 0.94978 0.92603 0.85591 0.83417 0.73805 0.73736 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 8.09 127.69 1.03 2.52 16 2 N -0.55 -22.09 2.88 -932.24 -2.69 -24.78 16 3 C 0.02 0.65 8.49 127.69 1.08 1.74 16 4 C 0.21 9.38 1.97 43.42 0.09 9.46 16 5 H 0.04 1.99 6.93 -2.39 -0.02 1.97 16 6 C -0.51 -26.98 7.18 25.60 0.18 -26.80 16 7 H 0.04 2.14 7.98 -2.91 -0.02 2.11 16 8 C 0.04 2.24 4.20 84.66 0.36 2.59 16 9 N -0.94 -55.99 13.96 21.45 0.30 -55.69 16 10 Si 0.91 42.69 25.94 68.60 1.78 44.47 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.18 -8.02 5.57 99.48 0.55 -7.47 16 14 C -0.07 -2.55 3.45 -19.86 -0.07 -2.62 16 15 C -0.11 -4.09 6.81 22.27 0.15 -3.94 16 16 C -0.13 -3.96 9.98 22.35 0.22 -3.74 16 17 C 0.06 1.88 6.72 22.57 0.15 2.03 16 18 O -0.50 -12.33 13.29 -79.61 -1.06 -13.38 16 19 C 0.08 2.45 6.72 22.57 0.15 2.60 16 20 O -0.50 -13.43 13.29 -79.67 -1.06 -14.48 16 21 C -0.14 -5.02 9.60 22.35 0.21 -4.81 16 22 H 0.02 0.95 5.10 -2.39 -0.01 0.94 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.06 2.80 4.88 -2.39 -0.01 2.79 16 25 H 0.06 1.87 7.92 -2.38 -0.02 1.85 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.03 1.06 5.30 -2.39 -0.01 1.04 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.13 4.63 4.83 -2.91 -0.01 4.61 16 30 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.40 5.76 9.06 -74.06 -0.67 5.08 16 32 H 0.40 6.69 9.06 -74.06 -0.67 6.02 16 33 H 0.13 4.41 7.96 -2.91 -0.02 4.39 16 Total: -1.00 -66.64 264.06 0.50 -66.14 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.34 Total: 18.69 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 3.57 Total: -20.96 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.39 Total: -80.47 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -2.12 Total: -27.87 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.78 Total: 44.47 kcal Total: -66.64 0.50 -66.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260629949.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.554 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds