Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00279 * 2 1 4 4 C 1.38694 * 119.98625 * 179.97438 * 3 2 1 5 5 C 1.38111 * 120.02446 * 180.02562 * 4 3 2 6 6 C 1.38857 * 119.97707 * 0.25986 * 5 4 3 7 7 N 1.39944 * 120.01819 * 179.69711 * 6 5 4 8 8 C 1.46493 * 119.99974 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47402 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46746 * 304.99867 * 9 8 7 11 11 O 1.42897 * 109.47057 * 64.99561 * 9 8 7 12 12 C 1.50700 * 109.47420 * 185.00076 * 9 8 7 13 13 H 1.07994 * 119.99661 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99739 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00046 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99661 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47350 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47041 * 120.00015 * 16 14 12 19 19 H 1.48496 * 109.47427 * 240.00151 * 16 14 12 20 20 C 1.38867 * 119.96484 * 359.48327 * 6 5 4 21 21 C 1.38109 * 119.97425 * 0.51585 * 20 6 5 22 22 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47567 * 300.00349 * 1 2 3 24 24 H 1.09001 * 109.47374 * 60.00285 * 1 2 3 25 25 H 1.07999 * 119.98667 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.00866 * 179.97438 * 5 4 3 27 27 H 0.97000 * 119.99776 * 359.97438 * 7 6 5 28 28 H 1.09003 * 109.47091 * 299.99884 * 8 7 6 29 29 H 1.09004 * 109.47739 * 59.99503 * 8 7 6 30 30 H 0.96694 * 114.00263 * 60.00190 * 11 9 8 31 31 H 0.97006 * 119.99857 * 180.02562 * 15 14 12 32 32 H 1.07990 * 120.01167 * 180.23185 * 20 6 5 33 33 H 1.08000 * 119.98554 * 179.72455 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4315 1.2839 0.0005 5 6 4.0594 2.5140 0.0011 6 6 3.3035 3.6788 0.0065 7 7 3.9388 4.9257 0.0135 8 6 3.1410 6.1543 0.0198 9 6 4.0730 7.3677 0.0260 10 1 4.7617 7.2924 0.8675 11 8 4.8147 7.4048 -1.1948 12 6 3.2565 8.6276 0.1564 13 1 2.1805 8.5688 0.2272 14 6 3.8833 9.8553 0.1852 15 7 5.1936 9.9269 0.0984 16 14 2.8712 11.4171 0.3460 17 1 1.4302 11.0672 0.4251 18 1 3.2723 12.1422 1.5783 19 1 3.1064 12.2835 -0.8369 20 6 1.9168 3.6058 0.0006 21 6 1.2906 2.3747 0.0000 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 4.0192 0.3778 0.0014 26 1 5.1380 2.5699 0.0019 27 1 4.9075 4.9764 0.0149 28 1 2.5125 6.1839 -0.8703 29 1 2.5117 6.1744 0.9096 30 1 4.2648 7.4716 -1.9873 31 1 5.6346 10.7907 0.1190 32 1 1.3282 4.5112 0.0010 33 1 0.2122 2.3177 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260685500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -65.355568 kcal Electronic energy + Delta-G solvation = -16101.018859 eV Core-core repulsion = 13319.867866 eV Total energy + Delta-G solvation = -2781.150993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84192 -37.85662 -36.15159 -33.78017 -32.21462 -30.82853 -29.49193 -27.74896 -26.53507 -24.59147 -22.53202 -21.24892 -20.55812 -17.97729 -17.19151 -16.73175 -15.66915 -15.58129 -14.75941 -14.66271 -14.42950 -14.32007 -13.81818 -13.26937 -12.85067 -12.78441 -12.64858 -12.22757 -11.85113 -11.75375 -11.18075 -11.04353 -10.92816 -10.82894 -10.51243 -10.18196 -9.16849 -9.14332 -8.76198 -8.68679 -8.31164 -6.70415 -6.11584 -4.30607 1.58163 1.93217 3.21559 3.30066 3.33046 3.47686 4.04177 4.12054 4.35348 4.97687 5.07522 5.13630 5.16592 5.18794 5.40819 5.57844 5.63675 5.84254 6.01369 6.05447 6.19728 6.26600 6.37629 6.59820 6.65907 6.67606 6.90518 7.53279 7.59303 7.71300 7.85932 8.03644 8.31939 8.72668 9.25532 9.46583 10.93072 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050441 B = 0.004447 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.966584 B = 6294.962469 C = 6744.663915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.326 6.326 3 C 0.046 3.954 4 C -0.099 4.099 5 C -0.169 4.169 6 C 0.199 3.801 7 N -0.736 5.736 8 C 0.097 3.903 9 C 0.221 3.779 10 H 0.061 0.939 11 O -0.565 6.565 12 C -0.574 4.574 13 H 0.059 0.941 14 C 0.080 3.920 15 N -0.858 5.858 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.168 4.168 21 C -0.154 4.154 22 H 0.092 0.908 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.401 0.599 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.347 0.653 31 H 0.261 0.739 32 H 0.124 0.876 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -14.631 -0.441 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.001 3.999 4 C -0.119 4.119 5 C -0.192 4.192 6 C 0.093 3.907 7 N -0.364 5.364 8 C -0.027 4.027 9 C 0.163 3.837 10 H 0.079 0.921 11 O -0.367 6.367 12 C -0.612 4.612 13 H 0.077 0.923 14 C -0.127 4.127 15 N -0.493 5.493 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.191 4.191 21 C -0.173 4.173 22 H 0.111 0.889 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.235 0.765 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.191 0.809 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.249 -14.552 -0.015 15.837 hybrid contribution -0.985 1.209 -0.209 1.573 sum -7.234 -13.343 -0.224 15.179 Atomic orbital electron populations 1.22908 0.79435 1.03083 1.00978 1.86005 1.20455 1.27306 1.90312 1.18670 0.92172 0.83803 1.05267 1.20060 0.91179 0.97603 1.03019 1.20407 0.99335 0.90451 1.09042 1.17952 0.91856 0.86286 0.94592 1.45037 1.08741 1.02210 1.80401 1.22374 0.95638 0.84907 0.99808 1.19580 0.89881 0.89049 0.85181 0.92115 1.86553 1.38032 1.96505 1.15642 1.21546 0.93579 0.91332 1.54749 0.92276 1.25035 0.94790 0.99258 0.93603 1.70082 1.07877 1.24869 1.46481 0.86550 0.80503 0.83129 0.77823 1.19617 1.20799 1.20793 1.20482 0.92840 0.97496 1.08254 1.20935 0.99258 0.91913 1.05182 0.88947 0.93152 0.93146 0.85814 0.85740 0.76461 0.93384 0.92775 0.80873 0.92882 0.85833 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.33 -4.32 10.50 -19.73 -0.21 -4.52 16 3 C 0.05 0.67 6.69 -39.24 -0.26 0.41 16 4 C -0.10 -1.41 9.98 -39.46 -0.39 -1.80 16 5 C -0.17 -2.51 9.89 -39.40 -0.39 -2.89 16 6 C 0.20 3.28 6.66 -83.69 -0.56 2.72 16 7 N -0.74 -13.09 5.69 -58.59 -0.33 -13.42 16 8 C 0.10 1.92 4.49 -4.04 -0.02 1.90 16 9 C 0.22 5.33 2.86 -27.88 -0.08 5.25 16 10 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 11 O -0.56 -13.86 12.68 -35.23 -0.45 -14.30 16 12 C -0.57 -15.17 8.76 -34.44 -0.30 -15.47 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 15 N -0.86 -24.72 12.84 55.43 0.71 -24.01 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.17 -2.64 9.31 -39.40 -0.37 -3.01 16 21 C -0.15 -2.17 9.03 -39.46 -0.36 -2.53 16 22 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 26 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.40 7.07 8.49 -40.82 -0.35 6.72 16 28 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 29 H 0.05 1.07 7.96 -51.93 -0.41 0.66 16 30 H 0.35 7.65 9.04 45.56 0.41 8.06 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.12 1.92 6.73 -52.49 -0.35 1.57 16 33 H 0.12 1.42 6.29 -52.49 -0.33 1.08 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -29.79 285.65 -6.29 -36.09 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -3.47 Total: 12.34 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.83 Total: -12.07 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.38 Total: -37.43 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.65 Total: -18.83 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.79 -6.29 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260685500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.269 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds