Wall clock time and date at job start Mon Mar 30 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 117.00279 * 2 1 4 4 C 1.38694 * 119.98625 * 179.97438 * 3 2 1 5 5 C 1.38111 * 120.02446 * 180.02562 * 4 3 2 6 6 C 1.38857 * 119.97707 * 0.25986 * 5 4 3 7 7 N 1.39944 * 120.01819 * 179.69711 * 6 5 4 8 8 C 1.46493 * 119.99974 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47402 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.46746 * 304.99867 * 9 8 7 11 11 O 1.42897 * 109.47057 * 64.99561 * 9 8 7 12 12 C 1.50700 * 109.47420 * 185.00076 * 9 8 7 13 13 H 1.07994 * 119.99661 * 359.97438 * 12 9 8 14 14 C 1.37881 * 119.99739 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00046 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99661 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47350 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47041 * 120.00015 * 16 14 12 19 19 H 1.48496 * 109.47427 * 240.00151 * 16 14 12 20 20 C 1.38867 * 119.96484 * 359.48327 * 6 5 4 21 21 C 1.38109 * 119.97425 * 0.51585 * 20 6 5 22 22 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47567 * 300.00349 * 1 2 3 24 24 H 1.09001 * 109.47374 * 60.00285 * 1 2 3 25 25 H 1.07999 * 119.98667 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.00866 * 179.97438 * 5 4 3 27 27 H 0.97000 * 119.99776 * 359.97438 * 7 6 5 28 28 H 1.09003 * 109.47091 * 299.99884 * 8 7 6 29 29 H 1.09004 * 109.47739 * 59.99503 * 8 7 6 30 30 H 0.96694 * 114.00263 * 60.00190 * 11 9 8 31 31 H 0.97006 * 119.99857 * 180.02562 * 15 14 12 32 32 H 1.07990 * 120.01167 * 180.23185 * 20 6 5 33 33 H 1.08000 * 119.98554 * 179.72455 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4315 1.2839 0.0005 5 6 4.0594 2.5140 0.0011 6 6 3.3035 3.6788 0.0065 7 7 3.9388 4.9257 0.0135 8 6 3.1410 6.1543 0.0198 9 6 4.0730 7.3677 0.0260 10 1 4.7617 7.2924 0.8675 11 8 4.8147 7.4048 -1.1948 12 6 3.2565 8.6276 0.1564 13 1 2.1805 8.5688 0.2272 14 6 3.8833 9.8553 0.1852 15 7 5.1936 9.9269 0.0984 16 14 2.8712 11.4171 0.3460 17 1 1.4302 11.0672 0.4251 18 1 3.2723 12.1422 1.5783 19 1 3.1064 12.2835 -0.8369 20 6 1.9168 3.6058 0.0006 21 6 1.2906 2.3747 0.0000 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 4.0192 0.3778 0.0014 26 1 5.1380 2.5699 0.0019 27 1 4.9075 4.9764 0.0149 28 1 2.5125 6.1839 -0.8703 29 1 2.5117 6.1744 0.9096 30 1 4.2648 7.4716 -1.9873 31 1 5.6346 10.7907 0.1190 32 1 1.3282 4.5112 0.0010 33 1 0.2122 2.3177 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260685500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:10 Heat of formation + Delta-G solvation = -86.960286 kcal Electronic energy + Delta-G solvation = -16101.955710 eV Core-core repulsion = 13319.867866 eV Total energy + Delta-G solvation = -2782.087844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93004 -39.09689 -37.81764 -35.22835 -34.26840 -31.95599 -30.98889 -29.06299 -27.68267 -26.26492 -23.88513 -22.54584 -22.08527 -19.18920 -18.94339 -18.02625 -16.91665 -16.68743 -16.48528 -16.29055 -16.07882 -15.55007 -15.21383 -14.57226 -14.26552 -14.18201 -13.98082 -13.44504 -13.22905 -13.09975 -12.82006 -12.75341 -12.63505 -12.10026 -11.98876 -11.60333 -11.10555 -10.75283 -10.37709 -10.24717 -9.89454 -8.17617 -7.96016 -6.43296 0.44711 0.76218 1.40494 1.42413 1.54148 2.35352 2.54850 2.74641 2.96157 3.10059 3.94890 4.03285 4.19876 4.30419 4.39373 4.47105 4.47607 4.53975 4.63755 4.69080 4.78834 4.97120 5.08242 5.23597 5.43373 5.50592 5.57809 5.67811 5.77878 5.99220 6.43530 6.62846 6.70668 6.95455 7.29863 7.48472 8.87606 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050441 B = 0.004447 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.966584 B = 6294.962469 C = 6744.663915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.338 6.338 3 C 0.047 3.953 4 C -0.106 4.106 5 C -0.168 4.168 6 C 0.175 3.825 7 N -0.742 5.742 8 C 0.120 3.880 9 C 0.223 3.777 10 H 0.029 0.971 11 O -0.577 6.577 12 C -0.586 4.586 13 H 0.064 0.936 14 C 0.027 3.973 15 N -0.899 5.899 16 Si 0.962 3.038 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.279 1.279 20 C -0.178 4.178 21 C -0.155 4.155 22 H 0.118 0.882 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.399 0.601 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.358 0.642 31 H 0.262 0.738 32 H 0.121 0.879 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -15.636 -0.559 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.001 3.999 4 C -0.125 4.125 5 C -0.191 4.191 6 C 0.071 3.929 7 N -0.371 5.371 8 C -0.004 4.004 9 C 0.165 3.835 10 H 0.047 0.953 11 O -0.381 6.381 12 C -0.625 4.625 13 H 0.082 0.918 14 C -0.176 4.176 15 N -0.536 5.536 16 Si 0.787 3.213 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.201 4.201 21 C -0.174 4.174 22 H 0.136 0.864 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.161 0.839 26 H 0.156 0.844 27 H 0.233 0.767 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.203 0.797 31 H 0.071 0.929 32 H 0.139 0.861 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.887 -15.598 -0.136 17.479 hybrid contribution -0.533 1.354 -0.178 1.466 sum -8.420 -14.244 -0.314 16.550 Atomic orbital electron populations 1.23230 0.77276 1.05132 1.01722 1.86001 1.22719 1.26583 1.90019 1.18880 0.92526 0.84429 1.04044 1.20340 0.91631 0.98026 1.02529 1.20593 1.00084 0.90175 1.08201 1.18148 0.92430 0.86023 0.96275 1.44815 1.08376 1.02114 1.81821 1.21881 0.94499 0.84188 0.99871 1.19400 0.89498 0.90492 0.84112 0.95332 1.86496 1.38764 1.96663 1.16201 1.21958 0.94077 0.92433 1.53986 0.91754 1.25894 0.95763 1.02700 0.93255 1.70212 1.09655 1.25656 1.48030 0.85462 0.79251 0.78905 0.77674 1.18562 1.20583 1.20513 1.20607 0.92680 0.98213 1.08647 1.21155 1.00560 0.91180 1.04525 0.86423 0.92379 0.92345 0.83897 0.84450 0.76686 0.92957 0.92993 0.79716 0.92894 0.86062 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -8.10 10.50 -93.51 -0.98 -9.08 16 3 C 0.05 1.26 6.69 22.49 0.15 1.41 16 4 C -0.11 -2.81 9.98 22.35 0.22 -2.59 16 5 C -0.17 -4.78 9.89 22.39 0.22 -4.56 16 6 C 0.17 5.66 6.66 38.14 0.25 5.92 16 7 N -0.74 -26.47 5.69 -339.27 -1.93 -28.40 16 8 C 0.12 4.78 4.49 86.38 0.39 5.17 16 9 C 0.22 10.94 2.86 29.85 0.09 11.03 16 10 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 11 O -0.58 -28.77 12.68 -148.98 -1.89 -30.66 16 12 C -0.59 -31.10 8.76 25.60 0.22 -30.87 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.03 1.45 5.40 84.66 0.46 1.91 16 15 N -0.90 -52.54 12.84 21.45 0.28 -52.27 16 16 Si 0.96 42.24 29.54 68.60 2.03 44.26 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 C -0.18 -5.45 9.31 22.39 0.21 -5.24 16 21 C -0.16 -4.09 9.03 22.35 0.20 -3.89 16 22 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 24 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 25 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 26 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 27 H 0.40 14.30 8.49 -92.71 -0.79 13.52 16 28 H 0.05 2.01 7.94 -2.39 -0.02 2.00 16 29 H 0.05 2.06 7.96 -2.39 -0.02 2.04 16 30 H 0.36 15.87 9.04 -74.06 -0.67 15.21 16 31 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.12 3.68 6.73 -2.92 -0.02 3.66 16 33 H 0.14 3.00 6.29 -2.91 -0.02 2.98 16 Total: -1.00 -62.87 285.65 0.70 -62.17 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: -0.33 Total: 34.24 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 3.53 Total: -20.27 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.65 Total: -80.66 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.87 Total: -39.74 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -62.87 0.70 -62.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260685500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.791 kcal (2) G-P(sol) polarization free energy of solvation -62.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds