Wall clock time and date at job start Mon Mar 30 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00646 * 2 1 4 4 C 1.38697 * 119.98831 * 179.97438 * 3 2 1 5 5 C 1.38106 * 120.02425 * 180.02562 * 4 3 2 6 6 C 1.38864 * 119.97746 * 359.97438 * 5 4 3 7 7 N 1.39934 * 120.01830 * 180.02562 * 6 5 4 8 8 C 1.46496 * 120.00310 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47428 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46986 * 60.00432 * 9 8 7 11 11 O 1.42898 * 109.47113 * 300.00392 * 9 8 7 12 12 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 19 19 H 1.48498 * 109.47295 * 60.00420 * 16 14 12 20 20 C 1.38861 * 119.96173 * 0.27455 * 6 5 4 21 21 C 1.38108 * 119.98073 * 359.47264 * 20 6 5 22 22 H 1.09007 * 109.46811 * 60.00807 * 1 2 3 23 23 H 1.08995 * 109.47699 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47363 * 300.01024 * 1 2 3 25 25 H 1.08001 * 119.98717 * 0.02562 * 4 3 2 26 26 H 1.07997 * 120.00986 * 179.97438 * 5 4 3 27 27 H 0.97008 * 120.00287 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.47181 * 60.00214 * 8 7 6 29 29 H 1.09004 * 109.47212 * 300.00365 * 8 7 6 30 30 H 0.96701 * 113.99881 * 299.99463 * 11 9 8 31 31 H 0.97000 * 119.99706 * 359.97438 * 15 14 12 32 32 H 1.07996 * 120.00703 * 179.70116 * 20 6 5 33 33 H 1.08001 * 119.99316 * 180.25445 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0595 2.5140 0.0011 6 6 3.3036 3.6788 0.0005 7 7 3.9389 4.9256 0.0005 8 6 3.1411 6.1543 -0.0006 9 6 4.0732 7.3677 0.0003 10 1 4.7030 7.3427 -0.8890 11 8 4.8963 7.3352 1.1680 12 6 3.2524 8.6316 -0.0015 13 1 2.1739 8.5751 -0.0027 14 6 3.8785 9.8600 -0.0016 15 7 5.1918 9.9288 -0.0007 16 14 2.8611 11.4267 -0.0031 17 1 3.7658 12.6043 -0.0036 18 1 2.0053 11.4601 -1.2163 19 1 2.0035 11.4612 1.2087 20 6 1.9169 3.6057 0.0052 21 6 1.2907 2.3748 -0.0006 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 4.0193 0.3778 0.0005 26 1 5.1380 2.5699 0.0019 27 1 4.9077 4.9764 0.0005 28 1 2.5116 6.1796 0.8889 29 1 2.5129 6.1789 -0.8911 30 1 4.4015 7.3549 1.9986 31 1 5.7200 9.1153 0.0005 32 1 1.3283 4.5112 0.0097 33 1 0.2122 2.3177 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260685502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:12 Heat of formation + Delta-G solvation = -71.742608 kcal Electronic energy + Delta-G solvation = -16148.164644 eV Core-core repulsion = 13366.736688 eV Total energy + Delta-G solvation = -2781.427956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89714 -37.94629 -36.43201 -33.94118 -32.22245 -30.88575 -29.55321 -27.71119 -26.46598 -24.26662 -22.58796 -21.36599 -20.78632 -18.04586 -17.50586 -16.79640 -15.85756 -15.62252 -15.17845 -14.61279 -14.42562 -14.06724 -13.76987 -13.32440 -12.97892 -12.89610 -12.59210 -12.31473 -11.98114 -11.79607 -11.73773 -11.01630 -10.82488 -10.58571 -10.25555 -10.16544 -9.40611 -9.21573 -8.81820 -8.57280 -8.22793 -6.77841 -6.46305 -4.31168 1.52497 1.87203 3.37276 3.38120 3.43191 3.57584 3.96636 4.06159 4.45676 4.93239 5.02535 5.10327 5.13997 5.24220 5.37605 5.51870 5.57870 5.76855 5.80738 5.93706 6.08435 6.14908 6.29732 6.49958 6.55963 6.60008 6.84455 7.29287 7.52209 7.71815 7.88294 8.19980 8.25530 8.74399 8.95687 9.54832 10.94053 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.050506 B = 0.004471 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.259858 B = 6261.398767 C = 6723.071976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.048 3.952 4 C -0.099 4.099 5 C -0.168 4.168 6 C 0.198 3.802 7 N -0.738 5.738 8 C 0.105 3.895 9 C 0.204 3.796 10 H 0.054 0.946 11 O -0.581 6.581 12 C -0.652 4.652 13 H 0.052 0.948 14 C 0.036 3.964 15 N -0.889 5.889 16 Si 1.068 2.932 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.167 4.167 21 C -0.153 4.153 22 H 0.050 0.950 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.400 0.600 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.356 0.644 31 H 0.284 0.716 32 H 0.123 0.877 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 -15.135 0.315 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.003 3.997 4 C -0.119 4.119 5 C -0.191 4.191 6 C 0.092 3.908 7 N -0.366 5.366 8 C -0.019 4.019 9 C 0.147 3.853 10 H 0.072 0.928 11 O -0.386 6.386 12 C -0.690 4.690 13 H 0.070 0.930 14 C -0.173 4.173 15 N -0.523 5.523 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.190 4.190 21 C -0.173 4.173 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.235 0.765 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.202 0.798 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.738 -13.512 -0.149 15.100 hybrid contribution -0.649 -1.457 0.337 1.630 sum -7.387 -14.969 0.189 16.694 Atomic orbital electron populations 1.22916 0.79373 1.03141 1.00996 1.86008 1.20507 1.27251 1.90268 1.18679 0.92169 0.83829 1.05049 1.20065 0.91197 0.97605 1.02995 1.20403 0.99318 0.90446 1.08978 1.17937 0.91868 0.86204 0.94778 1.45000 1.08702 1.02230 1.80681 1.22187 0.95355 0.84389 1.00017 1.19748 0.89151 0.90701 0.85695 0.92798 1.86462 1.38989 1.96908 1.16248 1.22313 0.94287 0.92299 1.60061 0.92964 1.25826 0.97188 1.01830 0.92485 1.70653 1.05297 1.33911 1.42409 0.83572 0.74819 0.75392 0.76611 1.20661 1.21345 1.21320 1.20483 0.92812 0.97534 1.08171 1.20942 0.99312 0.91881 1.05146 0.93125 0.88889 0.93128 0.85742 0.85754 0.76510 0.93174 0.92738 0.79840 0.90439 0.85858 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.33 -4.28 10.50 -19.76 -0.21 -4.48 16 3 C 0.05 0.69 6.69 -39.24 -0.26 0.43 16 4 C -0.10 -1.40 9.98 -39.46 -0.39 -1.79 16 5 C -0.17 -2.48 9.89 -39.40 -0.39 -2.87 16 6 C 0.20 3.25 6.66 -83.70 -0.56 2.69 16 7 N -0.74 -13.07 5.63 -58.59 -0.33 -13.40 16 8 C 0.10 2.08 4.52 -4.04 -0.02 2.07 16 9 C 0.20 4.90 2.51 -27.88 -0.07 4.83 16 10 H 0.05 1.40 8.01 -51.93 -0.42 0.99 16 11 O -0.58 -13.87 11.77 -35.23 -0.41 -14.28 16 12 C -0.65 -17.48 8.76 -34.44 -0.30 -17.78 16 13 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 14 C 0.04 1.00 5.40 -17.82 -0.10 0.90 16 15 N -0.89 -26.47 13.53 55.43 0.75 -25.72 16 16 Si 1.07 24.30 29.90 -169.99 -5.08 19.21 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 20 C -0.17 -2.63 9.31 -39.40 -0.37 -3.00 16 21 C -0.15 -2.16 9.03 -39.46 -0.36 -2.52 16 22 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.40 7.00 8.36 -40.82 -0.34 6.66 16 28 H 0.05 0.99 7.94 -51.93 -0.41 0.58 16 29 H 0.05 1.09 7.96 -51.93 -0.41 0.68 16 30 H 0.36 7.75 9.04 45.56 0.41 8.16 16 31 H 0.28 8.57 6.47 -40.82 -0.26 8.30 16 32 H 0.12 1.93 6.73 -52.49 -0.35 1.58 16 33 H 0.12 1.42 6.29 -52.49 -0.33 1.09 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -30.14 283.32 -6.22 -36.36 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.38 Total: 13.80 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.82 Total: -15.75 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.42 Total: -39.12 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.62 Total: -18.77 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.14 -6.22 -36.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260685502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.385 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds