Wall clock time and date at job start Mon Mar 30 2020 03:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38795 * 120.02865 * 0.02562 * 3 2 1 5 5 C 1.38150 * 120.05594 * 180.02562 * 4 3 2 6 6 C 1.38198 * 120.11224 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.97565 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46843 * 219.99993 * 7 6 5 9 9 N 1.46900 * 109.47135 * 339.99628 * 7 6 5 10 10 C 1.52994 * 109.47268 * 100.00185 * 7 6 5 11 11 C 1.50704 * 109.47135 * 175.00050 * 10 7 6 12 12 H 1.07989 * 119.99739 * 359.97438 * 11 10 7 13 13 C 1.37880 * 119.99767 * 179.97438 * 11 10 7 14 14 N 1.31511 * 119.99794 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00281 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46914 * 89.99918 * 15 13 11 17 17 H 1.48497 * 109.46865 * 210.00123 * 15 13 11 18 18 H 1.48501 * 109.46788 * 329.99870 * 15 13 11 19 19 C 1.38753 * 120.05092 * 359.97438 * 6 5 4 20 20 O 1.35891 * 120.02716 * 179.97438 * 19 6 5 21 21 C 1.38613 * 120.02671 * 180.02562 * 3 2 1 22 22 H 1.08998 * 109.47334 * 299.99304 * 1 2 3 23 23 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 24 24 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.97209 * 359.75001 * 4 3 2 26 26 H 1.08004 * 119.94625 * 179.97438 * 5 4 3 27 27 H 1.00894 * 111.00393 * 296.05617 * 9 7 6 28 28 H 1.00904 * 110.99681 * 59.99922 * 9 7 6 29 29 H 1.09007 * 109.46772 * 294.99785 * 10 7 6 30 30 H 1.09003 * 109.47543 * 54.99448 * 10 7 6 31 31 H 0.97000 * 120.00337 * 179.97438 * 14 13 11 32 32 H 0.96695 * 114.00821 * 270.02375 * 20 19 6 33 33 H 1.07994 * 120.05441 * 359.96223 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9170 3.6065 0.0000 6 6 3.2969 3.6823 -0.0016 7 6 3.9771 5.0270 -0.0016 8 1 4.8428 4.9962 -0.6632 9 7 3.0363 6.0517 -0.4736 10 6 4.4326 5.3682 1.4186 11 6 5.2196 6.6532 1.3987 12 1 5.3793 7.1742 0.4663 13 6 5.7357 7.1638 2.5709 14 7 6.4221 8.2854 2.5536 15 14 5.4589 6.2630 4.1838 16 1 6.5652 5.2981 4.4080 17 1 5.4236 7.2434 5.2985 18 1 4.1678 5.5315 4.1268 19 6 4.0566 2.5212 -0.0021 20 8 5.4134 2.5962 -0.0042 21 6 3.4301 1.2842 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2120 2.3187 -0.0031 26 1 1.3274 4.5114 0.0000 27 1 2.7703 5.8842 -1.4323 28 1 2.2245 6.0998 0.1237 29 1 3.5602 5.4863 2.0614 30 1 5.0601 4.5636 1.8021 31 1 6.7849 8.6448 3.3782 32 1 5.8048 2.6179 -0.8882 33 1 4.0196 0.3793 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047193.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:22 Heat of formation + Delta-G solvation = -52.901348 kcal Electronic energy + Delta-G solvation = -16681.051202 eV Core-core repulsion = 13900.440264 eV Total energy + Delta-G solvation = -2780.610938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.35520 -38.60895 -36.30581 -34.85959 -32.30686 -30.38313 -29.21089 -28.65437 -27.30053 -24.32720 -22.35601 -21.69559 -19.67385 -18.79313 -16.86533 -16.76520 -16.49771 -15.84289 -15.27652 -15.18595 -14.68687 -14.22989 -14.00758 -13.62139 -13.09850 -12.50020 -12.42737 -12.34437 -12.02281 -11.42438 -11.32057 -11.20268 -10.77527 -10.47884 -10.29954 -9.90614 -9.63226 -9.04162 -8.72410 -8.38801 -8.02945 -7.88898 -5.87571 -3.81667 1.29407 1.47965 3.12284 3.41198 3.47591 3.52300 3.70417 4.46690 4.59011 4.74665 4.95050 4.97178 4.99763 5.19825 5.23906 5.26465 5.46283 5.54833 5.61526 5.94649 6.14517 6.24155 6.40667 6.47329 6.64904 6.80415 7.24296 7.31225 7.41240 7.84612 7.87484 7.98963 8.10196 8.74461 9.24260 9.75585 11.26321 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.006335 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.664625 B = 4419.177247 C = 4523.994713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.161 4.161 7 C 0.153 3.847 8 H 0.084 0.916 9 N -0.821 5.821 10 C 0.003 3.997 11 C -0.491 4.491 12 H 0.079 0.921 13 C 0.063 3.937 14 N -0.908 5.908 15 Si 0.873 3.127 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.269 1.269 19 C 0.151 3.849 20 O -0.483 6.483 21 C -0.179 4.179 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.324 0.676 28 H 0.333 0.667 29 H 0.011 0.989 30 H 0.022 0.978 31 H 0.260 0.740 32 H 0.389 0.611 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 -15.367 -7.465 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.232 4.232 5 C -0.094 4.094 6 C -0.164 4.164 7 C 0.041 3.959 8 H 0.102 0.898 9 N -0.348 5.348 10 C -0.035 4.035 11 C -0.529 4.529 12 H 0.097 0.903 13 C -0.137 4.137 14 N -0.549 5.549 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.194 1.194 19 C 0.105 3.895 20 O -0.293 6.293 21 C -0.198 4.198 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.246 0.754 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.001 -14.890 -6.595 19.653 hybrid contribution -0.995 -1.154 0.430 1.583 sum -11.996 -16.044 -6.165 20.961 Atomic orbital electron populations 1.23018 0.78598 1.03649 1.01369 1.86038 1.21198 1.27066 1.89092 1.18671 0.91733 0.84026 0.97531 1.21150 0.99749 0.92250 1.10004 1.20689 0.93778 0.97099 0.97856 1.21722 0.94162 0.98507 1.02003 1.20347 0.93444 0.81850 1.00237 0.89829 1.58766 1.19801 1.51027 1.05251 1.19596 0.96237 0.97697 0.89976 1.21034 1.30732 1.05332 0.95825 0.90257 1.24976 0.95199 0.94875 0.98626 1.69908 1.37163 1.20415 1.27367 0.86897 0.79128 0.79680 0.84228 1.20440 1.21618 1.19414 1.17936 0.83337 0.90558 0.97628 1.84897 1.15385 1.95972 1.33034 1.20594 0.91806 0.98351 1.09059 0.92672 0.92746 0.88444 0.85637 0.85565 0.86457 0.85299 0.97085 0.95988 0.93057 0.75427 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.03 10.50 -19.42 -0.20 -4.23 16 3 C 0.13 1.76 6.68 -39.24 -0.26 1.49 16 4 C -0.21 -2.80 9.04 -39.41 -0.36 -3.16 16 5 C -0.08 -1.11 9.24 -39.63 -0.37 -1.47 16 6 C -0.16 -2.72 5.09 -104.45 -0.53 -3.25 16 7 C 0.15 3.01 2.58 -68.87 -0.18 2.83 16 8 H 0.08 1.69 7.85 -51.93 -0.41 1.28 16 9 N -0.82 -14.75 8.42 -5.66 -0.05 -14.80 16 10 C 0.00 0.06 3.67 -27.88 -0.10 -0.04 16 11 C -0.49 -14.30 9.39 -34.44 -0.32 -14.62 16 12 H 0.08 2.51 7.99 -52.49 -0.42 2.09 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 15 Si 0.87 22.79 27.47 -169.99 -4.67 18.12 16 16 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 18 H -0.27 -6.86 6.54 56.52 0.37 -6.49 16 19 C 0.15 2.46 6.67 -39.24 -0.26 2.20 16 20 O -0.48 -7.67 12.62 -19.40 -0.24 -7.92 16 21 C -0.18 -2.66 9.93 -39.29 -0.39 -3.05 16 22 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 23 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 26 H 0.13 1.64 6.24 -52.48 -0.33 1.31 16 27 H 0.32 4.79 9.06 -39.29 -0.36 4.43 16 28 H 0.33 5.60 7.29 -39.29 -0.29 5.32 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 30 H 0.02 0.56 7.46 -51.93 -0.39 0.18 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.39 4.15 9.06 45.56 0.41 4.56 16 33 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 279.55 15.07 4.21 4.21 Total: -1.00 -34.79 279.55 -5.34 -40.13 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -3.28 Total: 8.62 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.88 Total: -16.05 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.73 Total: -42.89 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.45 Total: -12.15 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.79 -5.34 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047193.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.768 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds