Wall clock time and date at job start Mon Mar 30 2020 03:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 117.00088 * 2 1 4 4 C 1.38793 * 120.02775 * 359.97438 * 3 2 1 5 5 C 1.38156 * 120.05211 * 179.97438 * 4 3 2 6 6 C 1.38196 * 120.11367 * 0.02562 * 5 4 3 7 7 C 1.50691 * 119.97370 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47483 * 180.02562 * 7 6 5 9 9 C 1.50705 * 109.47216 * 60.00297 * 7 6 5 10 10 H 1.08006 * 119.99798 * 272.92951 * 9 7 6 11 11 C 1.37875 * 120.00152 * 92.92596 * 9 7 6 12 12 N 1.31509 * 119.99998 * 4.07070 * 11 9 7 13 13 Si 1.86798 * 119.99842 * 184.06370 * 11 9 7 14 14 H 1.48497 * 109.47043 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47405 * 300.00129 * 13 11 9 16 16 H 1.48495 * 109.47032 * 60.00385 * 13 11 9 17 17 C 1.53005 * 109.47443 * 300.00183 * 7 6 5 18 18 N 1.46897 * 109.47135 * 185.48072 * 17 7 6 19 19 C 1.38749 * 120.05054 * 0.25614 * 6 5 4 20 20 O 1.35900 * 120.02340 * 179.72746 * 19 6 5 21 21 C 1.38613 * 120.02620 * 179.97438 * 3 2 1 22 22 H 1.08997 * 109.46830 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46837 * 300.00141 * 1 2 3 24 24 H 1.08995 * 109.46828 * 59.99813 * 1 2 3 25 25 H 1.07999 * 119.97550 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.94127 * 180.02562 * 5 4 3 27 27 H 0.97000 * 119.99825 * 354.52135 * 12 11 9 28 28 H 1.09000 * 109.46910 * 305.48514 * 17 7 6 29 29 H 1.09003 * 109.46773 * 65.48204 * 17 7 6 30 30 H 1.00903 * 110.99644 * 183.88948 * 18 17 7 31 31 H 1.00893 * 111.00443 * 307.84955 * 18 17 7 32 32 H 0.96697 * 113.99839 * 90.00029 * 20 19 6 33 33 H 1.07999 * 120.05688 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3752 -0.0005 5 6 1.9174 3.6065 0.0000 6 6 3.2973 3.6821 0.0005 7 6 3.9776 5.0267 0.0005 8 1 5.0586 4.8870 0.0005 9 6 3.5700 5.7959 1.2307 10 1 2.6748 6.4001 1.2179 11 6 4.3399 5.7284 2.3726 12 7 5.4712 5.0579 2.3641 13 14 3.7759 6.5893 3.9314 14 1 4.7729 6.3652 5.0090 15 1 3.6448 8.0457 3.6728 16 1 2.4616 6.0409 4.3520 17 6 3.5647 5.8072 -1.2490 18 7 4.3265 7.0614 -1.3169 19 6 4.0568 2.5209 -0.0048 20 8 5.4137 2.5960 -0.0099 21 6 3.4302 1.2840 0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.2122 2.3188 -0.0005 26 1 1.3278 4.5114 0.0000 27 1 5.7255 4.5456 1.5807 28 1 3.7709 5.2083 -2.1361 29 1 2.4991 6.0315 -1.2017 30 1 4.0271 7.6245 -2.0988 31 1 4.2540 7.5758 -0.4520 32 1 5.8098 2.6158 0.8720 33 1 4.0197 0.3791 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083465.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:25 Heat of formation + Delta-G solvation = -88.919666 kcal Electronic energy + Delta-G solvation = -17078.718210 eV Core-core repulsion = 14296.545400 eV Total energy + Delta-G solvation = -2782.172809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.28435 -39.56081 -37.42333 -36.37657 -34.25507 -32.10489 -30.92141 -28.72229 -27.50570 -25.93850 -24.02958 -22.99753 -21.63281 -19.73662 -18.68627 -17.81500 -17.54154 -16.88824 -16.61061 -16.04874 -15.74882 -15.62642 -15.36455 -14.92305 -14.67431 -14.18991 -13.96203 -13.31542 -13.09294 -12.82808 -12.76701 -12.48087 -12.17299 -11.96977 -11.84778 -11.53640 -11.30633 -10.64550 -10.40274 -9.72447 -9.43822 -8.87456 -8.49091 -6.21412 0.30163 0.55097 1.56172 1.62234 1.80254 2.31233 2.59068 2.75360 3.27049 3.53535 3.87676 3.93936 4.09651 4.28510 4.40032 4.41927 4.53014 4.56247 4.67861 4.72050 4.78433 4.96984 5.02807 5.30789 5.34831 5.55975 5.71062 5.79232 6.17249 6.31008 6.42083 6.46226 6.66405 6.78004 6.87831 7.57719 8.89723 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.008504 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.924895 B = 3291.899405 C = 3597.244771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.116 3.884 4 C -0.208 4.208 5 C -0.068 4.068 6 C -0.114 4.114 7 C 0.059 3.941 8 H 0.030 0.970 9 C -0.583 4.583 10 H 0.046 0.954 11 C -0.021 4.021 12 N -0.935 5.935 13 Si 1.106 2.894 14 H -0.291 1.291 15 H -0.271 1.271 16 H -0.278 1.278 17 C 0.092 3.908 18 N -0.851 5.851 19 C 0.111 3.889 20 O -0.503 6.503 21 C -0.190 4.190 22 H 0.123 0.877 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.156 0.844 26 H 0.127 0.873 27 H 0.266 0.734 28 H 0.042 0.958 29 H 0.018 0.982 30 H 0.339 0.661 31 H 0.346 0.654 32 H 0.393 0.607 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.453 -5.487 -3.630 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.071 3.929 4 C -0.226 4.226 5 C -0.087 4.087 6 C -0.116 4.116 7 C 0.040 3.960 8 H 0.048 0.952 9 C -0.621 4.621 10 H 0.064 0.936 11 C -0.221 4.221 12 N -0.574 5.574 13 Si 0.930 3.070 14 H -0.217 1.217 15 H -0.196 1.196 16 H -0.203 1.203 17 C -0.039 4.039 18 N -0.382 5.382 19 C 0.066 3.934 20 O -0.315 6.315 21 C -0.210 4.210 22 H 0.142 0.858 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.173 0.827 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.251 0.749 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.354 -5.803 -2.805 11.359 hybrid contribution -1.104 0.192 -0.861 1.413 sum -10.458 -5.611 -3.665 12.421 Atomic orbital electron populations 1.23355 0.76394 1.05618 1.02226 1.86001 1.23537 1.26165 1.89106 1.18620 0.91348 0.84875 0.98036 1.21424 1.01023 0.91281 1.08905 1.20727 0.93301 0.97518 0.97123 1.20967 0.94765 0.96439 0.99449 1.17863 0.95864 0.88626 0.93696 0.95185 1.21999 1.11745 1.30265 0.98065 0.93597 1.26933 0.93389 0.97401 1.04385 1.70895 1.21876 1.31248 1.33379 0.83052 0.75350 0.75963 0.72671 1.21661 1.19625 1.20341 1.21551 0.93894 0.91470 0.97000 1.58622 1.62045 1.08310 1.09203 1.18250 0.83088 0.91630 1.00407 1.84673 1.16499 1.96072 1.34238 1.20600 0.92828 0.97603 1.09931 0.85845 0.92054 0.91655 0.82670 0.85552 0.92229 0.93991 0.96363 0.84832 0.84000 0.74937 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.33 -9.89 10.49 -92.39 -0.97 -10.86 16 3 C 0.12 4.06 6.68 22.49 0.15 4.21 16 4 C -0.21 -6.92 9.04 22.38 0.20 -6.72 16 5 C -0.07 -2.70 8.86 22.24 0.20 -2.50 16 6 C -0.11 -5.19 4.79 -19.75 -0.09 -5.28 16 7 C 0.06 2.87 2.06 -12.29 -0.03 2.85 16 8 H 0.03 1.68 5.17 -2.39 -0.01 1.67 16 9 C -0.58 -30.24 6.92 25.60 0.18 -30.07 16 10 H 0.05 2.34 7.82 -2.91 -0.02 2.32 16 11 C -0.02 -1.15 5.46 84.66 0.46 -0.69 16 12 N -0.94 -53.98 13.62 21.45 0.29 -53.68 16 13 Si 1.11 48.38 29.91 68.60 2.05 50.43 16 14 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 17 C 0.09 3.92 5.97 86.31 0.52 4.44 16 18 N -0.85 -34.03 9.65 -186.71 -1.80 -35.83 16 19 C 0.11 4.89 6.67 22.49 0.15 5.04 16 20 O -0.50 -22.39 11.94 -92.42 -1.10 -23.50 16 21 C -0.19 -7.41 9.93 22.46 0.22 -7.19 16 22 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 24 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 25 H 0.16 3.92 6.29 -2.91 -0.02 3.91 16 26 H 0.13 4.75 7.64 -2.91 -0.02 4.72 16 27 H 0.27 15.22 5.00 -92.71 -0.46 14.76 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16 30 H 0.34 10.95 9.08 -89.69 -0.81 10.14 16 31 H 0.35 14.56 8.00 -89.70 -0.72 13.85 16 32 H 0.39 16.44 7.93 -74.06 -0.59 15.85 16 33 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -64.02 277.29 0.88 -63.13 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.65 Total: 44.76 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 3.07 Total: -34.45 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -1.51 Total: -89.52 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -2.07 Total: -34.35 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.05 Total: 50.43 kcal Total: -64.02 0.88 -63.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083465.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.785 kcal (2) G-P(sol) polarization free energy of solvation -64.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds