Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 O 1.42901 * 109.46751 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47078 * 119.99813 * 2 1 3 6 6 C 1.36935 * 119.99938 * 300.00090 * 5 2 1 7 7 H 1.08000 * 120.00518 * 359.72965 * 6 5 2 8 8 C 1.38817 * 119.99990 * 179.97438 * 6 5 2 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.50697 * 109.47070 * 239.99943 * 2 1 3 15 15 C 1.38272 * 119.94285 * 89.72931 * 14 2 1 16 16 C 1.38140 * 120.05265 * 179.72018 * 15 14 2 17 17 C 1.38735 * 119.94465 * 0.57224 * 16 15 14 18 18 O 1.35902 * 120.05697 * 179.67963 * 17 16 15 19 19 C 1.38732 * 119.88928 * 359.70107 * 17 16 15 20 20 C 1.38145 * 119.94207 * 359.97438 * 19 17 16 21 21 H 1.08998 * 109.47453 * 300.00086 * 1 2 3 22 22 H 1.09005 * 109.47378 * 60.00161 * 1 2 3 23 23 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47401 * 299.99489 * 3 2 1 25 25 H 1.08998 * 109.47251 * 59.99790 * 3 2 1 26 26 H 0.96703 * 114.00416 * 179.97438 * 4 3 2 27 27 H 0.96999 * 119.99984 * 120.00025 * 5 2 1 28 28 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 29 29 H 1.07993 * 119.96969 * 359.97364 * 15 14 2 30 30 H 1.08004 * 120.02753 * 180.24786 * 16 15 14 31 31 H 0.96700 * 113.99903 * 270.02522 * 18 17 16 32 32 H 1.07995 * 120.02701 * 179.97438 * 19 17 16 33 33 H 1.08005 * 119.97337 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 0.0006 5 7 2.0183 -0.6906 1.1962 6 6 1.6875 -0.2227 2.4399 7 1 1.0702 0.6579 2.5390 8 6 2.1498 -0.8773 3.5733 9 7 2.9065 -1.9475 3.4526 10 14 1.6990 -0.2387 5.2699 11 1 0.2224 -0.2495 5.4267 12 1 2.3135 -1.1079 6.3053 13 1 2.2033 1.1492 5.4264 14 6 2.0323 -0.7104 -1.2304 15 6 2.2571 0.0009 -2.3947 16 6 2.7230 -0.6470 -3.5222 17 6 2.9542 -2.0145 -3.4893 18 8 3.4064 -2.6554 -4.5992 19 6 2.7225 -2.7269 -2.3216 20 6 2.2630 -2.0732 -1.1947 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6765 1.9564 0.8899 26 1 3.8623 2.3260 0.0002 27 1 2.5760 -1.4792 1.1072 28 1 3.2298 -2.4047 4.2446 29 1 2.0720 1.0645 -2.4212 30 1 2.9022 -0.0903 -4.4302 31 1 2.7042 -2.9874 -5.1751 32 1 2.9013 -3.7916 -2.2936 33 1 2.0821 -2.6274 -0.2855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380085432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = -48.083473 kcal Electronic energy + Delta-G solvation = -17068.538483 eV Core-core repulsion = 14288.136464 eV Total energy + Delta-G solvation = -2780.402019 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66822 -37.74430 -35.78868 -34.47738 -32.14336 -30.70672 -29.07916 -28.02978 -25.43446 -24.15987 -22.21695 -22.02739 -19.05697 -18.21789 -17.23998 -16.58236 -15.91167 -15.32658 -14.87859 -14.35779 -14.12495 -13.59653 -13.38161 -13.06072 -12.70900 -12.46266 -11.91497 -11.74169 -11.60128 -11.48867 -11.23168 -10.81305 -10.70233 -10.37237 -10.17673 -9.91462 -9.50695 -9.25578 -8.89261 -8.59429 -8.05892 -6.93142 -5.73030 -3.00957 1.61678 1.74606 3.44576 3.48818 3.50288 4.01058 4.45589 4.59349 4.92885 5.22652 5.26573 5.29312 5.55669 5.57314 5.74414 5.90435 5.95502 6.04225 6.19033 6.25741 6.33201 6.37791 6.51229 6.57210 6.74675 6.82511 6.95204 7.13947 7.20179 7.69599 7.84999 8.33043 8.44577 9.56089 10.11714 10.47875 11.49795 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034329 B = 0.007093 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.444993 B = 3946.820427 C = 4304.142259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.236 3.764 3 C 0.071 3.929 4 O -0.549 6.549 5 N -0.706 5.706 6 C -0.232 4.232 7 H 0.069 0.931 8 C -0.012 4.012 9 N -0.931 5.931 10 Si 0.905 3.095 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 C -0.056 4.056 15 C -0.096 4.096 16 C -0.149 4.149 17 C 0.083 3.917 18 O -0.503 6.503 19 C -0.144 4.144 20 C -0.090 4.090 21 H 0.062 0.938 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.046 0.954 26 H 0.360 0.640 27 H 0.387 0.613 28 H 0.255 0.745 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.382 0.618 32 H 0.123 0.877 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 3.362 -13.194 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.144 3.856 3 C -0.009 4.009 4 O -0.351 6.351 5 N -0.348 5.348 6 C -0.363 4.363 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.579 5.579 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.214 1.214 14 C -0.057 4.057 15 C -0.115 4.115 16 C -0.168 4.168 17 C 0.039 3.961 18 O -0.312 6.312 19 C -0.163 4.163 20 C -0.108 4.108 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.204 0.796 27 H 0.223 0.777 28 H 0.065 0.935 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.236 0.764 32 H 0.141 0.859 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.163 2.890 -12.777 13.476 hybrid contribution -0.318 0.647 0.805 1.081 sum -3.482 3.537 -11.973 12.961 Atomic orbital electron populations 1.22184 0.95952 1.02064 1.00464 1.18511 0.92038 0.89503 0.85578 1.22796 0.81531 0.98818 0.97794 1.86671 1.19457 1.31485 1.97518 1.42445 1.60474 1.32550 0.99369 1.19046 1.25502 1.08480 0.83320 0.91357 1.24701 1.00398 0.98050 0.97618 1.69649 1.39080 1.20793 1.28394 0.86302 0.77711 0.77844 0.84499 1.21353 1.21744 1.21434 1.20052 0.97064 0.93725 0.94822 1.20848 0.99011 0.99550 0.92083 1.21241 1.02165 0.94097 0.99258 1.18421 0.99835 0.90714 0.87099 1.84835 1.35958 1.75938 1.34455 1.21369 1.01343 1.00253 0.93288 1.21073 0.97302 0.94467 0.97996 0.91916 0.94059 0.92234 0.95577 0.93579 0.79643 0.77653 0.93495 0.86042 0.86183 0.76375 0.85880 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.42 37.16 0.31 -2.32 16 2 C 0.24 4.72 0.76 -132.97 -0.10 4.62 16 3 C 0.07 1.30 5.17 37.16 0.19 1.49 16 4 O -0.55 -10.67 12.91 -35.23 -0.46 -11.12 16 5 N -0.71 -17.62 4.76 -48.31 -0.23 -17.85 16 6 C -0.23 -6.31 8.67 -15.06 -0.13 -6.44 16 7 H 0.07 1.78 6.69 -52.49 -0.35 1.43 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 10 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C -0.06 -1.04 4.51 -104.60 -0.47 -1.51 16 15 C -0.10 -1.55 8.92 -39.60 -0.35 -1.90 16 16 C -0.15 -2.22 9.99 -39.43 -0.39 -2.61 16 17 C 0.08 1.28 6.71 -39.22 -0.26 1.01 16 18 O -0.50 -6.63 13.50 -19.43 -0.26 -6.90 16 19 C -0.14 -2.36 9.99 -39.43 -0.39 -2.75 16 20 C -0.09 -1.67 8.96 -39.61 -0.35 -2.03 16 21 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.40 6.50 -51.93 -0.34 0.06 16 25 H 0.05 0.89 7.26 -51.93 -0.38 0.51 16 26 H 0.36 5.12 9.12 45.56 0.42 5.54 16 27 H 0.39 10.47 5.86 -40.82 -0.24 10.24 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.12 1.73 6.17 -52.49 -0.32 1.41 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.38 3.00 9.06 45.56 0.41 3.41 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.14 2.72 6.70 -52.48 -0.35 2.37 16 LS Contribution 278.05 15.07 4.19 4.19 Total: -1.00 -33.03 278.05 -5.46 -38.50 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -2.36 Total: 16.21 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.05 Total: -12.87 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.49 Total: -45.32 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.72 Total: -18.02 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.03 -5.46 -38.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380085432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.584 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds