Wall clock time and date at job start Mon Mar 30 2020 03:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47068 * 239.99887 * 3 2 1 5 5 H 1.48498 * 109.46870 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46859 * 119.99924 * 3 2 1 7 7 C 1.37879 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00066 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00042 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47506 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00072 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47021 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47350 * 180.02562 * 12 11 10 14 14 N 1.29946 * 126.28876 * 270.02976 * 13 12 11 15 15 O 1.21297 * 110.25321 * 179.68528 * 14 13 12 16 16 C 1.33646 * 109.80764 * 0.46050 * 15 14 13 17 17 C 1.50706 * 126.54918 * 179.80385 * 16 15 14 18 18 C 1.53002 * 117.49668 * 59.69212 * 17 16 15 19 19 C 1.53000 * 60.02940 * 252.51929 * 18 17 16 20 20 N 1.31125 * 106.90001 * 359.54417 * 16 15 14 21 21 H 0.96992 * 120.00455 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46950 * 59.99968 * 9 7 2 23 23 H 1.09004 * 109.47335 * 300.00623 * 9 7 2 24 24 H 1.00902 * 110.99777 * 303.95585 * 10 9 7 25 25 H 1.09001 * 109.47512 * 59.99926 * 11 10 9 26 26 H 1.09000 * 109.47413 * 300.00310 * 11 10 9 27 27 H 1.09002 * 109.47275 * 60.00119 * 12 11 10 28 28 H 1.09003 * 109.47104 * 299.99863 * 12 11 10 29 29 H 1.09000 * 115.55924 * 205.37617 * 17 16 15 30 30 H 1.09002 * 117.49918 * 145.01964 * 18 17 16 31 31 H 1.09002 * 117.49754 * 0.02562 * 18 17 16 32 32 H 1.09008 * 117.49673 * 107.47884 * 19 18 17 33 33 H 1.08999 * 117.49942 * 252.47315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5303 -6.0430 -0.0005 13 6 1.8119 -7.3678 -0.0017 14 7 1.4437 -8.0440 1.0450 15 8 0.8831 -9.0658 0.7090 16 6 0.8479 -9.1455 -0.6246 17 6 0.2446 -10.2590 -1.4415 18 6 -1.2472 -10.5434 -1.2554 19 6 -0.2079 -11.5171 -0.6962 20 7 1.4336 -8.0671 -1.0865 21 1 -0.4850 0.8399 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8406 -3.5487 -0.7819 25 1 0.8808 -4.9812 -0.8913 26 1 0.8801 -4.9817 0.8886 27 1 3.1546 -5.9687 0.8900 28 1 3.1559 -5.9685 -0.8900 29 1 0.6606 -10.3879 -2.4407 30 1 -1.8126 -10.8595 -2.1321 31 1 -1.7923 -9.9248 -0.5424 32 1 -0.0691 -11.5389 0.3848 33 1 -0.0899 -12.4739 -1.2048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380208723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:43 Heat of formation + Delta-G solvation = 87.073706 kcal Electronic energy + Delta-G solvation = -15723.781086 eV Core-core repulsion = 12981.532673 eV Total energy + Delta-G solvation = -2742.248413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.61191 -37.85232 -36.65186 -35.24336 -32.97472 -32.09820 -29.87334 -26.36261 -25.17218 -23.86562 -22.87581 -22.34328 -21.31871 -20.36493 -18.12461 -17.53193 -16.63281 -16.38323 -15.23651 -14.93134 -14.63192 -14.18741 -13.59522 -13.19666 -12.62651 -12.42888 -12.25368 -12.15814 -12.07218 -11.90702 -11.31694 -11.13914 -11.08142 -10.97987 -10.79674 -10.63801 -10.58347 -9.96040 -9.68769 -9.19761 -8.48076 -7.36753 -6.02960 -4.05416 1.05499 2.18822 2.63184 3.22549 3.34512 3.38019 3.41302 3.56767 4.00878 4.24742 4.38691 4.43832 4.58235 4.98748 5.15750 5.25411 5.31709 5.32955 5.39678 5.50912 5.57779 5.59809 5.73604 5.88506 6.04631 6.28663 6.35427 7.21917 7.39734 7.76153 8.10589 8.18226 8.34793 8.57092 9.03171 9.59361 11.08278 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060642 B = 0.003559 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.612629 B = 7864.820494 C = 8072.342901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.688 5.688 11 C 0.068 3.932 12 C -0.029 4.029 13 C 0.186 3.814 14 N -0.382 5.382 15 O 0.074 5.926 16 C 0.200 3.800 17 C -0.078 4.078 18 C -0.154 4.154 19 C -0.160 4.160 20 N -0.474 5.474 21 H 0.262 0.738 22 H -0.012 1.012 23 H 0.028 0.972 24 H 0.331 0.669 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.149 0.851 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -22.902 -3.176 23.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.319 5.319 11 C -0.064 4.064 12 C -0.069 4.069 13 C -0.087 4.087 14 N -0.089 5.089 15 O 0.015 5.985 16 C -0.020 4.020 17 C -0.098 4.098 18 C -0.192 4.192 19 C -0.197 4.197 20 N -0.207 5.207 21 H 0.072 0.928 22 H 0.006 0.994 23 H 0.046 0.954 24 H 0.147 0.853 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.166 0.834 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.294 -22.184 -1.962 22.272 hybrid contribution -0.035 0.823 -0.978 1.279 sum -0.329 -21.361 -2.941 21.565 Atomic orbital electron populations 1.69953 1.06125 1.26968 1.50720 1.25002 0.94895 0.99430 0.95275 0.86509 0.79393 0.82517 0.78678 1.20217 1.21326 1.20108 1.21141 0.93531 0.90150 1.50628 0.91878 1.19564 0.90566 0.87171 0.95924 1.60677 1.21326 1.00868 1.48982 1.21766 0.94624 0.89547 1.00432 1.20077 0.97328 0.84436 1.05042 1.25984 0.99777 1.00062 0.82909 1.74680 1.13998 0.96632 1.23616 1.85260 1.56004 1.32814 1.24388 1.27645 0.96385 0.95827 0.82188 1.20291 0.98529 0.92076 0.98867 1.23180 0.89663 1.02145 1.04217 1.23182 1.01813 0.93369 1.01348 1.71875 1.15549 1.03825 1.29498 0.92808 0.99430 0.95364 0.85306 0.95742 0.91533 0.88235 0.88867 0.83353 0.86807 0.87811 0.87446 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.93 9.32 -34.44 -0.32 -15.25 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.27 5.44 -4.98 -0.03 5.24 16 10 N -0.69 -15.24 6.49 -115.06 -0.75 -15.99 16 11 C 0.07 1.29 5.67 -3.83 -0.02 1.27 16 12 C -0.03 -0.47 6.10 -27.88 -0.17 -0.64 16 13 C 0.19 2.99 7.47 -156.37 -1.17 1.82 16 14 N -0.38 -6.13 12.16 30.90 0.38 -5.76 16 15 O 0.07 1.00 11.08 18.09 0.20 1.20 16 16 C 0.20 2.46 7.97 -13.06 -0.10 2.35 16 17 C -0.08 -0.59 6.33 -91.73 -0.58 -1.17 16 18 C -0.15 -0.90 10.23 -26.73 -0.27 -1.17 16 19 C -0.16 -0.82 10.18 -26.70 -0.27 -1.09 16 20 N -0.47 -7.19 11.55 -9.87 -0.11 -7.31 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.33 6.82 8.72 -39.29 -0.34 6.48 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.59 8.01 -51.92 -0.42 0.18 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -32.86 293.88 -7.71 -40.57 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.53 Total: -0.36 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.04 Total: -7.12 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.25 Total: -55.66 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: 0.20 Total: 1.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.86 -7.71 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380208723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.640 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds