Wall clock time and date at job start Mon Mar 30 2020 03:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35992 * 116.99843 * 2 1 4 4 C 1.38564 * 120.07465 * 359.97438 * 3 2 1 5 5 C 1.38242 * 120.00349 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.14444 * 0.02562 * 5 4 3 7 7 C 1.38241 * 120.14260 * 359.97438 * 6 5 4 8 8 C 1.38570 * 120.00441 * 359.72658 * 7 6 5 9 9 O 1.35987 * 120.07523 * 180.27332 * 8 7 6 10 10 C 1.42902 * 117.00290 * 0.27721 * 9 8 7 11 11 C 1.53000 * 109.47414 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.46848 * 65.00118 * 11 10 9 13 13 C 1.36937 * 119.99972 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00179 * 180.02562 * 13 12 11 16 16 N 1.31616 * 119.99651 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00066 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47050 * 90.00102 * 17 15 13 19 19 H 1.48502 * 109.46978 * 209.99853 * 17 15 13 20 20 H 1.48501 * 109.47228 * 329.99452 * 17 15 13 21 21 H 1.09001 * 109.47103 * 60.00803 * 1 2 3 22 22 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00363 * 1 2 3 24 24 H 1.08004 * 119.99967 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.92979 * 179.97438 * 5 4 3 26 26 H 1.07994 * 119.92810 * 179.97438 * 6 5 4 27 27 H 1.08005 * 119.99604 * 180.02562 * 7 6 5 28 28 H 1.08999 * 109.46990 * 300.00122 * 10 9 8 29 29 H 1.09000 * 109.46884 * 60.00081 * 10 9 8 30 30 H 1.08998 * 109.47042 * 184.99725 * 11 10 9 31 31 H 1.09000 * 109.47141 * 305.00746 * 11 10 9 32 32 H 0.96997 * 120.00140 * 0.02562 * 12 11 10 33 33 H 0.97006 * 120.00051 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 3.3029 3.6799 -0.0016 7 6 4.0602 2.5234 -0.0011 8 6 3.4359 1.2863 0.0057 9 8 4.1795 0.1478 0.0119 10 6 5.6003 0.3007 0.0171 11 6 6.2618 -1.0788 0.0242 12 7 5.9516 -1.7756 -1.2266 13 6 6.4389 -3.0362 -1.4472 14 1 7.0521 -3.5166 -0.6993 15 6 6.1454 -3.6962 -2.6326 16 7 5.3985 -3.1105 -3.5444 17 14 6.8106 -5.4155 -2.9338 18 1 5.8401 -6.4178 -2.4253 19 1 7.0150 -5.6191 -4.3905 20 1 8.1057 -5.5764 -2.2251 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.2146 2.3196 -0.0014 25 1 1.3341 4.5115 -0.0019 26 1 3.7907 4.6434 -0.0024 27 1 5.1386 2.5841 -0.0011 28 1 5.9100 0.8480 -0.8732 29 1 5.9030 0.8530 0.9067 30 1 7.3417 -0.9635 0.1177 31 1 5.8840 -1.6586 0.8663 32 1 5.4012 -1.3440 -1.8986 33 1 5.1931 -3.5718 -4.3726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393624369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:12 Heat of formation + Delta-G solvation = -57.110898 kcal Electronic energy + Delta-G solvation = -16392.976640 eV Core-core repulsion = 13612.183163 eV Total energy + Delta-G solvation = -2780.793478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42423 -39.53361 -37.84377 -36.44287 -33.52648 -31.23757 -31.08996 -29.52342 -28.04550 -25.81767 -23.88079 -23.19203 -22.11550 -19.66206 -19.25346 -18.21249 -17.37501 -17.16200 -16.64593 -16.15886 -15.75650 -15.64698 -15.50336 -15.00078 -14.71858 -14.32602 -13.59491 -13.51423 -13.06343 -12.96958 -12.78952 -12.60602 -12.14829 -12.06584 -11.98757 -11.96557 -11.83787 -11.63402 -10.98397 -9.68064 -9.02859 -8.74975 -7.94720 -5.25172 0.35194 0.51570 1.46095 1.49828 1.58018 2.32552 2.45131 2.56008 2.81358 3.38789 3.85022 3.87711 3.98970 4.09114 4.21395 4.30201 4.34273 4.39070 4.47375 4.52470 4.54989 4.70474 4.76909 4.92814 5.05671 5.27917 5.38322 5.46687 5.56150 5.83915 6.22186 6.26387 6.73605 7.31628 8.05967 8.30015 9.29366 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.005579 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.297733 B = 5017.996436 C = 5563.974764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.065 3.935 4 C -0.174 4.174 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.182 4.182 8 C 0.068 3.932 9 O -0.327 6.327 10 C 0.061 3.939 11 C 0.148 3.852 12 N -0.744 5.744 13 C -0.250 4.250 14 H 0.080 0.920 15 C -0.079 4.079 16 N -0.972 5.972 17 Si 0.980 3.020 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.264 1.264 21 H 0.065 0.935 22 H 0.105 0.895 23 H 0.073 0.927 24 H 0.157 0.843 25 H 0.161 0.839 26 H 0.157 0.843 27 H 0.147 0.853 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.373 0.627 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 15.430 9.315 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C 0.020 3.980 4 C -0.192 4.192 5 C -0.138 4.138 6 C -0.135 4.135 7 C -0.201 4.201 8 C 0.023 3.977 9 O -0.242 6.242 10 C -0.013 4.013 11 C 0.022 3.978 12 N -0.387 5.387 13 C -0.381 4.381 14 H 0.098 0.902 15 C -0.271 4.271 16 N -0.623 5.623 17 Si 0.808 3.192 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.189 1.189 21 H 0.084 0.916 22 H 0.123 0.877 23 H 0.092 0.908 24 H 0.175 0.825 25 H 0.178 0.822 26 H 0.175 0.825 27 H 0.164 0.836 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.204 0.796 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.796 14.888 9.385 19.249 hybrid contribution -0.021 -0.842 -0.667 1.075 sum -7.817 14.046 8.718 18.287 Atomic orbital electron populations 1.23303 0.76742 1.05027 1.02374 1.86214 1.23306 1.27077 1.89264 1.18794 0.89660 0.86130 1.03391 1.21386 1.00948 0.90982 1.05911 1.21275 0.94836 0.97511 1.00200 1.21269 0.94127 0.98234 0.99861 1.21389 1.01503 0.90786 1.06389 1.18928 0.89193 0.87063 1.02551 1.86269 1.19718 1.29410 1.88795 1.23097 0.77650 0.98365 1.02237 1.20956 0.97378 0.90591 0.88853 1.42541 1.61886 1.16483 1.17838 1.19715 1.24616 0.92934 1.00871 0.90206 1.25682 1.01491 1.03021 0.96894 1.69868 1.43906 1.39495 1.09044 0.85043 0.78248 0.79256 0.76609 1.21529 1.21977 1.18905 0.91608 0.87685 0.90825 0.82539 0.82188 0.82495 0.83582 0.91898 0.88570 0.92096 0.95904 0.79589 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 16 2 O -0.34 -12.50 10.28 -79.59 -0.82 -13.32 16 3 C 0.07 2.20 6.70 22.57 0.15 2.35 16 4 C -0.17 -4.18 9.04 22.35 0.20 -3.98 16 5 C -0.12 -2.38 10.04 22.28 0.22 -2.15 16 6 C -0.12 -2.46 10.04 22.28 0.22 -2.24 16 7 C -0.18 -4.98 9.04 22.35 0.20 -4.78 16 8 C 0.07 2.44 6.70 22.57 0.15 2.59 16 9 O -0.33 -13.84 9.87 -79.53 -0.78 -14.63 16 10 C 0.06 2.19 4.87 71.98 0.35 2.54 16 11 C 0.15 6.37 6.65 86.38 0.57 6.94 16 12 N -0.74 -41.34 5.55 -343.45 -1.91 -43.25 16 13 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 14 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 15 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 16 N -0.97 -63.18 13.06 21.65 0.28 -62.90 16 17 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 20 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 21 H 0.07 1.29 7.66 -2.39 -0.02 1.27 16 22 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 24 H 0.16 2.77 6.30 -2.91 -0.02 2.75 16 25 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 27 H 0.15 3.45 6.30 -2.91 -0.02 3.43 16 28 H 0.06 2.18 7.65 -2.39 -0.02 2.17 16 29 H 0.10 2.62 7.68 -2.39 -0.02 2.60 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.37 22.51 7.67 -92.71 -0.71 21.79 16 33 H 0.25 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -77.17 285.61 3.70 -73.47 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.40 Total: 26.07 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.50 Total: -15.46 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -1.62 Total: -106.15 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -1.60 Total: -27.95 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -77.17 3.70 -73.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393624369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.359 kcal (2) G-P(sol) polarization free energy of solvation -77.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds