Wall clock time and date at job start Mon Mar 30 2020 03:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47004 * 2 1 4 4 C 1.35714 * 117.00247 * 180.02562 * 3 2 1 5 5 C 1.37961 * 120.12200 * 359.97438 * 4 3 2 6 6 C 1.39199 * 120.31788 * 179.97438 * 5 4 3 7 7 O 1.35712 * 119.71841 * 180.02562 * 6 5 4 8 8 C 1.42896 * 117.00157 * 180.02562 * 7 6 5 9 9 C 1.39023 * 120.56750 * 0.04898 * 6 5 4 10 10 C 1.38254 * 120.24330 * 359.97438 * 9 6 5 11 11 N 1.38922 * 120.16864 * 179.72364 * 10 9 6 12 12 C 1.41346 * 120.12701 * 180.02562 * 4 3 2 13 13 C 1.40823 * 120.27342 * 0.03795 * 12 4 3 14 14 H 1.08007 * 120.00062 * 139.48839 * 13 12 4 15 15 C 1.39829 * 120.00420 * 319.48515 * 13 12 4 16 16 N 1.31005 * 120.00053 * 340.18507 * 15 13 12 17 17 Si 1.86804 * 120.00432 * 160.17834 * 15 13 12 18 18 H 1.48502 * 109.46729 * 60.00237 * 17 15 13 19 19 H 1.48491 * 109.47429 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46864 * 300.00805 * 17 15 13 21 21 H 1.09001 * 109.47077 * 300.00167 * 1 2 3 22 22 H 1.08996 * 109.47040 * 60.00027 * 1 2 3 23 23 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47452 * 240.00209 * 2 1 3 25 25 H 1.08994 * 109.47407 * 119.99582 * 2 1 3 26 26 H 1.07996 * 119.84326 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.47719 * 59.99853 * 8 7 6 28 28 H 1.08997 * 109.47462 * 180.02562 * 8 7 6 29 29 H 1.09002 * 109.47135 * 299.99660 * 8 7 6 30 30 H 1.08005 * 119.88384 * 179.97438 * 9 6 5 31 31 H 0.97008 * 120.00027 * 352.87686 * 11 10 9 32 32 H 0.97005 * 120.00392 * 172.87980 * 11 10 9 33 33 H 0.97000 * 120.00011 * 175.60934 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3517 1.5252 -0.0005 5 6 4.1945 0.4329 -0.0005 6 6 5.5751 0.6107 -0.0016 7 8 6.3929 -0.4724 -0.0021 8 6 7.7999 -0.2229 -0.0027 9 6 6.1235 1.8882 -0.0017 10 6 5.3006 2.9992 -0.0013 11 7 5.8503 4.2750 0.0044 12 6 3.8948 2.8302 0.0000 13 6 3.0447 3.9529 0.0019 14 1 3.2863 4.8122 0.6099 15 6 1.8879 3.9553 -0.7835 16 7 1.7789 3.1259 -1.7918 17 14 0.4976 5.1410 -0.3951 18 1 0.9969 6.5365 -0.4876 19 1 -0.6070 4.9444 -1.3679 20 1 -0.0024 4.8842 0.9794 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.7812 -0.5648 0.0003 27 1 8.0685 0.3463 0.8873 28 1 8.3371 -1.1713 -0.0035 29 1 8.0676 0.3465 -0.8927 30 1 7.1963 2.0133 -0.0021 31 1 6.8074 4.3904 0.1123 32 1 5.2770 5.0507 -0.0994 33 1 0.9521 3.0829 -2.2972 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:50 Heat of formation + Delta-G solvation = -73.929712 kcal Electronic energy + Delta-G solvation = -17232.746663 eV Core-core repulsion = 14451.223867 eV Total energy + Delta-G solvation = -2781.522796 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78822 -39.39734 -37.79726 -34.92723 -34.14049 -32.22226 -30.53017 -29.41462 -27.95369 -26.07541 -24.27137 -22.54994 -21.75397 -19.29854 -18.85365 -17.86561 -17.02336 -16.78029 -16.52439 -16.24667 -16.00272 -15.70432 -15.37471 -14.76455 -14.06169 -13.66684 -13.54843 -13.22179 -13.05962 -12.97215 -12.75719 -12.55058 -12.35178 -12.08517 -11.99353 -11.73988 -11.52511 -11.27352 -10.58077 -10.03632 -8.54780 -8.31913 -8.03902 -5.84836 1.10553 1.21123 1.45386 1.51685 1.55853 2.41817 2.66344 2.96515 3.02597 3.60438 3.73548 4.18614 4.32945 4.45470 4.47410 4.50629 4.50785 4.67614 4.78129 4.82858 5.02044 5.03625 5.15854 5.26010 5.35217 5.52069 5.70188 5.89534 6.15304 6.54010 6.77051 6.88434 7.11194 7.24570 7.49324 7.53265 8.76159 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023343 B = 0.010256 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.227539 B = 2729.480977 C = 3763.205656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 O -0.293 6.293 4 C 0.126 3.874 5 C -0.287 4.287 6 C 0.103 3.897 7 O -0.343 6.343 8 C 0.028 3.972 9 C -0.297 4.297 10 C 0.186 3.814 11 N -0.861 5.861 12 C -0.028 4.028 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.825 5.825 17 Si 0.950 3.050 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.274 1.274 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.055 0.945 28 H 0.118 0.882 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.397 0.603 32 H 0.398 0.602 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -3.572 2.584 5.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 O -0.205 6.205 4 C 0.077 3.923 5 C -0.308 4.308 6 C 0.058 3.942 7 O -0.258 6.258 8 C -0.067 4.067 9 C -0.321 4.321 10 C 0.081 3.919 11 N -0.402 5.402 12 C -0.034 4.034 13 C -0.536 4.536 14 H 0.082 0.918 15 C -0.157 4.157 16 N -0.454 5.454 17 Si 0.774 3.226 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.200 1.200 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.120 0.880 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.074 0.926 28 H 0.136 0.864 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.712 -3.705 2.356 5.749 hybrid contribution -0.311 0.671 -0.054 0.741 sum 3.402 -3.034 2.301 5.106 Atomic orbital electron populations 1.21684 0.91971 1.03421 1.02288 1.22738 0.96603 0.83706 0.99893 1.86185 1.19233 1.27021 1.88072 1.18792 0.81778 0.92877 0.98806 1.19952 0.91587 0.97571 1.21679 1.18167 0.89152 0.85441 1.01486 1.85846 1.18662 1.31295 1.89997 1.23127 0.78150 1.04065 1.01356 1.20264 0.98849 0.90713 1.22270 1.17564 0.91159 0.86035 0.97182 1.41841 1.09715 1.04176 1.84510 1.16714 0.90364 0.91444 1.04856 1.18701 1.08047 1.01768 1.25040 0.91790 1.26034 1.00205 0.96941 0.92478 1.69878 1.26165 1.35256 1.14122 0.85764 0.78872 0.79580 0.78358 1.18957 1.20558 1.19951 0.92304 0.93128 0.88030 0.93952 0.92896 0.87032 0.92642 0.86359 0.93052 0.85214 0.77419 0.77333 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 10.28 71.98 0.74 -3.70 16 2 C 0.05 1.88 5.46 71.98 0.39 2.27 16 3 O -0.29 -15.03 7.17 -90.35 -0.65 -15.67 16 4 C 0.13 6.71 6.16 22.97 0.14 6.85 16 5 C -0.29 -14.08 8.96 22.44 0.20 -13.88 16 6 C 0.10 4.68 6.70 22.69 0.15 4.83 16 7 O -0.34 -13.46 10.48 -90.33 -0.95 -14.41 16 8 C 0.03 0.76 9.80 113.37 1.11 1.87 16 9 C -0.30 -12.89 8.84 22.46 0.20 -12.69 16 10 C 0.19 8.80 6.77 38.85 0.26 9.07 16 11 N -0.86 -33.22 8.96 -50.54 -0.45 -33.67 16 12 C -0.03 -1.53 5.35 -21.05 -0.11 -1.64 16 13 C -0.50 -27.52 7.89 23.29 0.18 -27.34 16 14 H 0.06 3.37 7.41 -2.91 -0.02 3.35 16 15 C 0.06 2.99 4.40 85.20 0.38 3.37 16 16 N -0.83 -45.92 11.38 21.82 0.25 -45.67 16 17 Si 0.95 41.61 29.61 68.60 2.03 43.64 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.04 1.71 7.66 -2.39 -0.02 1.69 16 25 H 0.05 1.98 7.66 -2.39 -0.02 1.96 16 26 H 0.11 5.10 6.26 -2.91 -0.02 5.08 16 27 H 0.05 1.41 7.64 -2.39 -0.02 1.39 16 28 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.05 1.35 7.64 -2.39 -0.02 1.33 16 30 H 0.13 4.67 6.24 -2.91 -0.02 4.65 16 31 H 0.40 12.12 8.84 -92.70 -0.82 11.30 16 32 H 0.40 15.50 7.44 -92.70 -0.69 14.81 16 33 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.83 277.20 3.51 -62.32 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.37 Total: 34.47 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.65 Total: -31.00 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -0.20 Total: -79.34 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.59 Total: -30.08 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -65.83 3.51 -62.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.608 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds