Wall clock time and date at job start Mon Mar 30 2020 03:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47039 * 2 1 4 4 C 1.35824 * 116.99495 * 180.02562 * 3 2 1 5 5 C 1.38535 * 120.17288 * 90.01006 * 4 3 2 6 6 O 1.36088 * 119.84440 * 0.03274 * 5 4 3 7 7 C 1.42905 * 116.99847 * 179.97438 * 6 5 4 8 8 C 1.38908 * 120.30277 * 180.02562 * 5 4 3 9 9 C 1.38446 * 120.64359 * 0.02562 * 8 5 4 10 10 C 1.38417 * 120.33418 * 0.22687 * 9 8 5 11 11 N 1.39052 * 120.16101 * 179.74851 * 10 9 8 12 12 C 1.41141 * 120.17147 * 270.02215 * 4 3 2 13 13 C 1.40920 * 120.31459 * 359.97438 * 12 4 3 14 14 H 1.08000 * 120.00545 * 140.63403 * 13 12 4 15 15 C 1.39896 * 120.00040 * 320.63739 * 13 12 4 16 16 N 1.30932 * 119.99673 * 338.54218 * 15 13 12 17 17 Si 1.86795 * 120.00118 * 158.53905 * 15 13 12 18 18 H 1.48502 * 109.47145 * 60.00074 * 17 15 13 19 19 H 1.48495 * 109.47185 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47291 * 300.00141 * 17 15 13 21 21 H 1.09004 * 109.47345 * 59.99520 * 1 2 3 22 22 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47104 * 299.99817 * 1 2 3 24 24 H 1.09004 * 109.46965 * 240.00954 * 2 1 3 25 25 H 1.08996 * 109.47617 * 120.00654 * 2 1 3 26 26 H 1.09000 * 109.46494 * 60.00201 * 7 6 5 27 27 H 1.09001 * 109.47178 * 180.02562 * 7 6 5 28 28 H 1.08995 * 109.47352 * 300.00577 * 7 6 5 29 29 H 1.07999 * 119.67498 * 179.97438 * 8 5 4 30 30 H 1.07996 * 119.83150 * 179.97438 * 9 8 5 31 31 H 0.97010 * 119.99506 * 5.16083 * 11 10 9 32 32 H 0.96997 * 120.00486 * 185.16321 * 11 10 9 33 33 H 0.97001 * 119.99968 * 175.90961 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3528 1.5252 -0.0005 5 6 4.0426 1.6168 -1.1985 6 8 3.3678 1.5287 -2.3770 7 6 4.1392 1.6316 -3.5755 8 6 5.4198 1.7981 -1.2022 9 6 6.1227 1.8894 -0.0129 10 6 5.4609 1.7962 1.1992 11 7 6.1712 1.8832 2.3915 12 6 4.0567 1.6174 1.2194 13 6 3.3689 1.5264 2.4460 14 1 3.8068 0.9854 3.2718 15 6 2.1189 2.1367 2.5940 16 7 1.7694 3.1147 1.7966 17 14 0.9484 1.5565 3.9291 18 1 1.5898 1.7258 5.2577 19 1 -0.3001 2.3587 3.8758 20 1 0.6246 0.1231 3.7149 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 4.8790 0.8315 -3.6011 27 1 3.4807 1.5460 -4.4399 28 1 4.6462 2.5962 -3.5996 29 1 5.9474 1.8678 -2.1419 30 1 7.1933 2.0300 -0.0311 31 1 7.1202 2.0840 2.3771 32 1 5.7179 1.7430 3.2375 33 1 0.8806 3.4982 1.8601 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:52 Heat of formation + Delta-G solvation = -52.500515 kcal Electronic energy + Delta-G solvation = -17568.125001 eV Core-core repulsion = 14787.531445 eV Total energy + Delta-G solvation = -2780.593556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.94060 -36.96921 -36.07666 -33.18270 -32.25721 -30.60338 -28.95066 -27.60682 -25.55940 -24.80991 -22.09111 -20.85530 -20.14429 -17.61793 -16.55537 -16.28589 -15.69513 -14.88747 -14.75316 -14.38109 -14.26166 -13.89873 -13.28151 -12.90706 -12.52855 -12.06106 -11.73853 -11.60480 -11.47980 -11.17802 -11.00321 -10.87069 -10.58644 -10.51875 -10.34942 -10.10341 -9.66728 -8.87084 -8.54810 -8.27128 -7.10651 -6.59547 -5.96982 -4.12552 2.77305 3.04764 3.17203 3.18255 3.24859 4.09956 4.39891 4.75305 5.05035 5.32404 5.62189 5.75141 5.80589 5.89106 5.97579 6.06338 6.18983 6.26905 6.40096 6.54712 6.75592 6.85125 6.86630 7.10323 7.31118 7.49853 7.57766 7.68579 8.00279 8.30086 8.41502 8.82679 8.92789 8.93960 9.15356 9.45820 10.44612 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.012420 C = 0.008640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.938762 B = 2253.922159 C = 3240.059495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.060 3.940 3 O -0.285 6.285 4 C 0.023 3.977 5 C 0.082 3.918 6 O -0.321 6.321 7 C 0.036 3.964 8 C -0.264 4.264 9 C -0.162 4.162 10 C 0.114 3.886 11 N -0.882 5.882 12 C 0.091 3.909 13 C -0.479 4.479 14 H 0.073 0.927 15 C 0.100 3.900 16 N -0.754 5.754 17 Si 0.883 3.117 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.265 1.265 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.377 0.623 32 H 0.392 0.608 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -3.468 -2.713 4.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.016 4.016 3 O -0.200 6.200 4 C -0.024 4.024 5 C 0.037 3.963 6 O -0.235 6.235 7 C -0.060 4.060 8 C -0.285 4.285 9 C -0.186 4.186 10 C 0.013 3.987 11 N -0.424 5.424 12 C 0.086 3.914 13 C -0.508 4.508 14 H 0.091 0.909 15 C -0.122 4.122 16 N -0.377 5.377 17 Si 0.708 3.292 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.190 1.190 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.203 0.797 32 H 0.221 0.779 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.960 -3.136 -2.837 4.336 hybrid contribution 0.039 -0.282 0.700 0.756 sum 0.999 -3.418 -2.137 4.153 Atomic orbital electron populations 1.21651 0.95532 1.00553 1.02208 1.22354 0.93664 0.86727 0.98813 1.86172 1.18061 1.22146 1.93627 1.17523 0.83372 1.13273 0.88240 1.19140 0.90549 1.02457 0.84142 1.86096 1.35881 1.89249 1.12299 1.22737 0.96428 1.00225 0.86636 1.20023 0.92190 1.19238 0.97024 1.19758 0.97075 1.10562 0.91189 1.17833 0.91851 1.03322 0.85667 1.41864 1.09948 1.84658 1.05972 1.17182 0.88554 0.92980 0.92665 1.18782 1.03053 1.31541 0.97469 0.90906 1.25497 0.97783 0.92722 0.96172 1.69759 1.19460 1.15462 1.32974 0.86790 0.80245 0.80198 0.81948 1.19548 1.20483 1.18970 0.92552 0.92431 0.92671 0.95200 0.94006 0.94013 0.90110 0.93849 0.88364 0.89052 0.79732 0.77919 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 10.28 37.16 0.38 -2.27 16 2 C 0.06 1.34 6.78 37.16 0.25 1.59 16 3 O -0.28 -7.45 6.83 -34.18 -0.23 -7.68 16 4 C 0.02 0.61 5.22 -38.37 -0.20 0.41 16 5 C 0.08 2.05 6.69 -39.22 -0.26 1.79 16 6 O -0.32 -7.34 10.27 -35.01 -0.36 -7.70 16 7 C 0.04 0.60 9.81 101.05 0.99 1.59 16 8 C -0.26 -6.02 9.03 -39.26 -0.35 -6.37 16 9 C -0.16 -3.64 9.86 -39.44 -0.39 -4.03 16 10 C 0.11 2.73 6.78 -83.25 -0.56 2.17 16 11 N -0.88 -17.54 8.98 32.72 0.29 -17.24 16 12 C 0.09 2.42 5.37 -106.51 -0.57 1.84 16 13 C -0.48 -12.46 8.04 -37.95 -0.30 -12.77 16 14 H 0.07 1.80 7.19 -52.49 -0.38 1.42 16 15 C 0.10 2.56 4.35 -17.31 -0.08 2.48 16 16 N -0.75 -20.39 11.41 55.55 0.63 -19.76 16 17 Si 0.88 19.15 29.61 -169.99 -5.03 14.11 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 29 H 0.10 1.96 6.25 -52.49 -0.33 1.63 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.38 6.26 8.84 -40.82 -0.36 5.90 16 32 H 0.39 7.67 7.30 -40.82 -0.30 7.37 16 33 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -29.87 280.70 -5.82 -35.69 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.25 Total: 11.91 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.10 Total: -13.56 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.93 Total: -37.00 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.59 Total: -15.38 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.87 -5.82 -35.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.815 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds