Wall clock time and date at job start Mon Mar 30 2020 03:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47363 * 2 1 4 4 C 1.35694 * 117.00128 * 180.02562 * 3 2 1 5 5 C 1.38203 * 120.10636 * 0.02562 * 4 3 2 6 6 C 1.38773 * 120.19360 * 179.97438 * 5 4 3 7 7 O 1.35748 * 119.80660 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99747 * 359.97438 * 7 6 5 9 9 C 1.40199 * 120.38705 * 0.02562 * 6 5 4 10 10 N 1.39984 * 119.89615 * 179.97438 * 9 6 5 11 11 C 1.37767 * 120.20176 * 359.69404 * 9 6 5 12 12 C 1.40795 * 119.80737 * 0.56057 * 11 9 6 13 13 C 1.40987 * 120.19289 * 179.73793 * 12 11 9 14 14 H 1.08000 * 120.00050 * 204.68316 * 13 12 11 15 15 C 1.39818 * 119.99450 * 24.96296 * 13 12 11 16 16 N 1.30950 * 120.00607 * 17.56133 * 15 13 12 17 17 Si 1.86804 * 119.99603 * 197.55538 * 15 13 12 18 18 H 1.48493 * 109.47356 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46631 * 120.00084 * 17 15 13 20 20 H 1.48495 * 109.47486 * 239.99899 * 17 15 13 21 21 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46791 * 300.00027 * 1 2 3 23 23 H 1.08996 * 109.47014 * 60.00097 * 1 2 3 24 24 H 1.09001 * 109.46791 * 239.99973 * 2 1 3 25 25 H 1.09000 * 109.46934 * 120.00406 * 2 1 3 26 26 H 1.08003 * 119.90230 * 0.02562 * 5 4 3 27 27 H 1.09001 * 109.47199 * 299.99852 * 8 7 6 28 28 H 1.08996 * 109.47221 * 60.00461 * 8 7 6 29 29 H 1.08999 * 109.46388 * 180.02562 * 8 7 6 30 30 H 0.96993 * 119.99961 * 359.97438 * 10 9 6 31 31 H 0.96996 * 119.99493 * 180.02562 * 10 9 6 32 32 H 1.07998 * 120.09636 * 180.27737 * 11 9 6 33 33 H 0.96996 * 120.00525 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5250 -0.0005 5 6 4.1955 0.4305 -0.0016 6 6 5.5716 0.6102 -0.0027 7 8 6.3932 -0.4704 -0.0042 8 6 5.7723 -1.7574 -0.0041 9 6 6.1182 1.9013 -0.0022 10 7 7.5077 2.0707 -0.0028 11 6 5.2920 3.0037 -0.0070 12 6 3.8946 2.8311 -0.0004 13 6 3.0415 3.9536 0.0003 14 1 2.0399 3.8703 0.3955 15 6 3.4904 5.1730 -0.5159 16 7 4.5400 5.2063 -1.2982 17 14 2.5926 6.7547 -0.0897 18 1 1.4477 6.4484 0.8050 19 1 3.5248 7.6825 0.6000 20 1 2.0921 7.3908 -1.3347 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.7829 -0.5675 -0.0024 27 1 5.1527 -1.8618 0.8866 28 1 5.1506 -1.8610 -0.8934 29 1 6.5400 -2.5311 -0.0050 30 1 8.0908 1.2955 -0.0031 31 1 7.8875 2.9632 -0.0020 32 1 5.7149 3.9974 -0.0111 33 1 4.8515 6.0523 -1.6561 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:53 Heat of formation + Delta-G solvation = -58.455176 kcal Electronic energy + Delta-G solvation = -16975.678106 eV Core-core repulsion = 14194.826336 eV Total energy + Delta-G solvation = -2780.851770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.07495 -37.61944 -35.88001 -33.76205 -32.34642 -30.68973 -29.08567 -27.26309 -26.46157 -24.41381 -22.84194 -20.59322 -20.26878 -17.67589 -17.13124 -16.07812 -15.40668 -15.23033 -15.08977 -14.73731 -14.71797 -13.65000 -13.43651 -12.88509 -12.50357 -12.43548 -12.12462 -11.87580 -11.60398 -11.32540 -11.08736 -10.83163 -10.56549 -10.42293 -10.29449 -10.04430 -9.96840 -9.59523 -9.11468 -8.37781 -7.17531 -6.67254 -5.86518 -4.07602 2.82333 3.07001 3.15813 3.22707 3.31292 4.05029 4.34524 4.41230 4.72243 5.12374 5.42089 5.58162 5.66195 5.66987 5.75947 5.76600 5.87328 5.98666 6.09666 6.26453 6.38384 6.68266 6.82755 7.18652 7.23722 7.39751 7.68291 7.76959 8.08407 8.29074 8.51181 8.71182 8.85247 8.97605 8.99791 9.23319 10.32902 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.010174 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.559663 B = 2751.527062 C = 4152.406635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.307 6.307 4 C 0.005 3.995 5 C -0.216 4.216 6 C -0.045 4.045 7 O -0.332 6.332 8 C 0.043 3.957 9 C 0.188 3.812 10 N -0.890 5.890 11 C -0.191 4.191 12 C 0.112 3.888 13 C -0.443 4.443 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.798 5.798 17 Si 0.905 3.095 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.277 1.277 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.387 0.613 31 H 0.386 0.614 32 H 0.132 0.868 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -6.767 1.756 7.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.222 6.222 4 C -0.040 4.040 5 C -0.236 4.236 6 C -0.092 4.092 7 O -0.248 6.248 8 C -0.054 4.054 9 C 0.087 3.913 10 N -0.432 5.432 11 C -0.216 4.216 12 C 0.108 3.892 13 C -0.473 4.473 14 H 0.100 0.900 15 C -0.143 4.143 16 N -0.425 5.425 17 Si 0.730 3.270 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.202 1.202 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.121 0.879 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.213 0.787 31 H 0.213 0.787 32 H 0.150 0.850 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.544 -6.472 1.612 6.692 hybrid contribution -0.154 0.266 0.014 0.308 sum -0.698 -6.206 1.626 6.453 Atomic orbital electron populations 1.21715 0.94231 1.01425 1.03116 1.22393 0.94624 0.85062 0.99632 1.85966 1.20570 1.25138 1.90540 1.18808 0.80532 0.93564 1.11109 1.20476 0.92610 0.96991 1.13514 1.17727 0.88033 0.84626 1.18818 1.85729 1.34625 1.12530 1.91906 1.22627 0.98349 0.84376 1.00012 1.16997 0.83691 0.90287 1.00281 1.42096 1.03640 1.08863 1.88625 1.20419 0.91783 0.95986 1.13390 1.16752 0.91565 0.88937 0.91942 1.19331 1.00365 0.92957 1.34691 0.90038 1.25852 0.94840 1.00771 0.92844 1.69902 1.22164 1.27762 1.22697 0.86306 0.80342 0.81155 0.79157 1.18462 1.19932 1.20218 0.91672 0.91965 0.91881 0.93821 0.93903 0.87882 0.94285 0.94256 0.90209 0.78714 0.78701 0.85012 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 37.16 0.38 -1.74 16 2 C 0.06 1.07 5.46 37.16 0.20 1.27 16 3 O -0.31 -7.29 9.41 -18.78 -0.18 -7.46 16 4 C 0.01 0.13 6.72 -38.37 -0.26 -0.13 16 5 C -0.22 -5.03 8.00 -39.40 -0.32 -5.35 16 6 C -0.05 -1.07 6.73 -38.65 -0.26 -1.33 16 7 O -0.33 -6.85 9.71 -18.95 -0.18 -7.03 16 8 C 0.04 0.67 9.80 101.05 0.99 1.66 16 9 C 0.19 4.53 6.76 -83.57 -0.57 3.97 16 10 N -0.89 -17.67 9.09 32.51 0.30 -17.38 16 11 C -0.19 -5.03 8.50 -38.79 -0.33 -5.36 16 12 C 0.11 3.07 5.58 -106.67 -0.60 2.47 16 13 C -0.44 -12.19 8.70 -37.95 -0.33 -12.52 16 14 H 0.08 2.24 7.64 -52.49 -0.40 1.84 16 15 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 16 N -0.80 -20.92 10.96 55.54 0.61 -20.31 16 17 Si 0.91 19.26 29.60 -169.99 -5.03 14.23 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.76 7.65 -51.93 -0.40 0.36 16 25 H 0.04 0.73 7.66 -51.93 -0.40 0.33 16 26 H 0.10 2.10 4.47 -52.48 -0.23 1.87 16 27 H 0.04 0.59 7.65 -51.93 -0.40 0.20 16 28 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.39 6.99 8.18 -40.82 -0.33 6.65 16 31 H 0.39 6.96 8.84 -40.82 -0.36 6.60 16 32 H 0.13 3.52 6.17 -52.49 -0.32 3.20 16 33 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 278.51 15.07 4.20 4.20 Total: -1.00 -29.96 278.51 -5.53 -35.49 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.07 Total: 13.52 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.17 Total: -15.26 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.90 Total: -37.69 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.36 Total: -14.50 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.96 -5.53 -35.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.969 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds