Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47115 * 2 1 4 4 C 1.36100 * 117.00262 * 179.97438 * 3 2 1 5 5 C 1.38681 * 119.89096 * 0.02562 * 4 3 2 6 6 C 1.38651 * 120.64881 * 179.97438 * 5 4 3 7 7 C 1.38082 * 120.41999 * 0.02562 * 6 5 4 8 8 O 1.35771 * 120.11998 * 179.97438 * 7 6 5 9 9 C 1.42903 * 116.99951 * 359.97438 * 8 7 6 10 10 C 1.41330 * 119.76621 * 0.02562 * 7 6 5 11 11 C 1.40916 * 120.31332 * 179.97438 * 10 7 6 12 12 H 1.08002 * 120.00087 * 141.18115 * 11 10 7 13 13 C 1.39900 * 120.00127 * 321.18270 * 11 10 7 14 14 N 1.30936 * 119.99604 * 339.63082 * 13 11 10 15 15 Si 1.86796 * 120.00185 * 159.63431 * 13 11 10 16 16 H 1.48494 * 109.47565 * 89.99817 * 15 13 11 17 17 H 1.48503 * 109.47198 * 210.00187 * 15 13 11 18 18 H 1.48506 * 109.47065 * 329.99464 * 15 13 11 19 19 C 1.38864 * 119.89598 * 179.72877 * 4 3 2 20 20 N 1.39189 * 120.21111 * 359.97438 * 19 4 3 21 21 H 1.08993 * 109.47300 * 60.00041 * 1 2 3 22 22 H 1.09007 * 109.47139 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47303 * 299.99637 * 1 2 3 24 24 H 1.09003 * 109.47357 * 119.99974 * 2 1 3 25 25 H 1.09001 * 109.47186 * 240.00118 * 2 1 3 26 26 H 1.08004 * 119.67635 * 359.97438 * 5 4 3 27 27 H 1.08002 * 119.79310 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47271 * 180.02562 * 9 8 7 29 29 H 1.08996 * 109.47788 * 300.00352 * 9 8 7 30 30 H 1.08998 * 109.46736 * 60.00547 * 9 8 7 31 31 H 0.97006 * 119.99177 * 180.02562 * 14 13 11 32 32 H 0.97004 * 119.99617 * 359.97438 * 20 19 4 33 33 H 0.96997 * 120.00497 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3555 1.5256 0.0005 5 6 4.1983 0.4242 0.0005 6 6 5.5751 0.5878 0.0005 7 6 6.1289 1.8527 0.0011 8 8 7.4780 2.0057 0.0016 9 6 8.2662 0.8137 0.0022 10 6 5.2866 2.9875 0.0022 11 6 5.8394 4.2837 0.0033 12 1 5.3809 5.0668 -0.5822 13 6 6.9822 4.5561 0.7629 14 7 7.3092 3.7707 1.7583 15 14 8.0415 6.0402 0.3573 16 1 7.5565 7.2181 1.1204 17 1 9.4519 5.7575 0.7266 18 1 7.9585 6.3247 -1.0979 19 6 3.8839 2.8098 -0.0051 20 7 3.0381 3.9152 -0.0119 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.7780 -0.5707 0.0005 27 1 6.2185 -0.2796 0.0001 28 1 9.3238 1.0774 0.0030 29 1 8.0376 0.2273 0.8920 30 1 8.0384 0.2272 -0.8879 31 1 8.1014 3.9598 2.2852 32 1 2.0762 3.7897 -0.0130 33 1 3.4104 4.8108 -0.0155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -52.345828 kcal Electronic energy + Delta-G solvation = -17131.513791 eV Core-core repulsion = 14350.926942 eV Total energy + Delta-G solvation = -2780.586849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.01949 -37.68638 -35.58009 -33.18396 -32.55090 -31.08410 -29.04089 -26.64524 -26.14927 -24.85434 -22.97139 -20.49657 -20.10732 -17.75182 -16.51504 -16.18705 -15.82927 -15.36204 -14.79005 -14.27922 -14.23832 -13.90502 -13.51266 -12.78321 -12.65868 -12.42916 -11.84325 -11.76845 -11.47634 -11.40030 -11.07554 -10.90064 -10.50636 -10.46625 -10.34930 -10.19407 -9.69635 -9.30979 -8.84109 -8.71624 -6.72582 -6.43142 -5.92463 -4.00328 2.87244 3.17127 3.23548 3.24426 3.30900 4.10738 4.21939 4.74431 4.89134 5.29274 5.40959 5.46330 5.63389 5.66866 5.85615 5.99451 6.07812 6.11966 6.14974 6.24363 6.28264 6.42415 6.79347 7.10796 7.29579 7.42814 7.55010 7.69487 8.01454 8.29584 8.51419 8.73005 9.03866 9.05107 9.26731 9.34130 10.53235 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.008263 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.353758 B = 3387.697115 C = 4133.493210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.331 6.331 4 C 0.031 3.969 5 C -0.232 4.232 6 C -0.207 4.207 7 C 0.080 3.920 8 O -0.277 6.277 9 C 0.035 3.965 10 C 0.072 3.928 11 C -0.474 4.474 12 H 0.073 0.927 13 C 0.093 3.907 14 N -0.778 5.778 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.130 3.870 20 N -0.875 5.875 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.274 0.726 32 H 0.383 0.617 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -4.575 -2.018 6.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.247 6.247 4 C -0.016 4.016 5 C -0.252 4.252 6 C -0.228 4.228 7 C 0.033 3.967 8 O -0.190 6.190 9 C -0.062 4.062 10 C 0.066 3.934 11 C -0.504 4.504 12 H 0.090 0.910 13 C -0.126 4.126 14 N -0.404 5.404 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.189 1.189 19 C 0.028 3.972 20 N -0.418 5.418 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.209 0.791 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.134 -4.356 -1.824 6.277 hybrid contribution 0.563 0.166 0.011 0.588 sum -3.571 -4.190 -1.813 5.796 Atomic orbital electron populations 1.21743 0.94237 1.01772 1.02852 1.22391 0.94252 0.84143 1.00381 1.85855 1.20794 1.26799 1.91253 1.18026 0.80546 0.92814 1.10256 1.19965 0.93180 0.95379 1.16678 1.20316 0.94622 0.95151 1.12713 1.18813 0.81976 0.92305 1.03613 1.86216 1.15139 1.28749 1.88855 1.22671 0.95157 0.89109 0.99265 1.16188 0.86764 0.92463 0.98021 1.18718 1.10327 0.95224 1.26165 0.90950 1.25506 0.96827 0.96987 0.93242 1.69781 1.22626 1.35537 1.12425 0.86510 0.79546 0.81771 0.79847 1.20248 1.20547 1.18919 1.16914 0.89641 0.83972 1.06717 1.41696 1.06272 1.05868 1.87969 0.92054 0.91383 0.92030 0.93277 0.93307 0.88534 0.88625 0.90694 0.94454 0.94915 0.91586 0.79053 0.77906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 37.16 0.38 -1.45 16 2 C 0.06 1.04 5.46 37.16 0.20 1.24 16 3 O -0.33 -6.80 9.36 -20.06 -0.19 -6.99 16 4 C 0.03 0.72 6.69 -39.19 -0.26 0.46 16 5 C -0.23 -5.29 9.03 -39.27 -0.35 -5.65 16 6 C -0.21 -4.94 9.02 -39.49 -0.36 -5.30 16 7 C 0.08 2.09 6.17 -38.46 -0.24 1.86 16 8 O -0.28 -7.02 7.39 -19.02 -0.14 -7.16 16 9 C 0.03 0.68 9.81 101.05 0.99 1.67 16 10 C 0.07 1.94 5.38 -106.51 -0.57 1.36 16 11 C -0.47 -12.75 8.03 -37.95 -0.30 -13.05 16 12 H 0.07 1.86 7.22 -52.49 -0.38 1.48 16 13 C 0.09 2.42 4.39 -17.31 -0.08 2.35 16 14 N -0.78 -21.06 11.26 55.55 0.63 -20.43 16 15 Si 0.90 19.74 29.61 -169.99 -5.03 14.71 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 19 C 0.13 3.25 6.80 -83.09 -0.56 2.68 16 20 N -0.88 -18.87 8.98 32.80 0.29 -18.57 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 25 H 0.05 0.76 7.65 -51.93 -0.40 0.36 16 26 H 0.10 1.93 6.25 -52.48 -0.33 1.61 16 27 H 0.10 2.03 6.26 -52.49 -0.33 1.71 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 30 H 0.03 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.27 6.87 8.30 -40.82 -0.34 6.53 16 32 H 0.38 7.39 8.17 -40.82 -0.33 7.06 16 33 H 0.39 8.17 7.31 -40.82 -0.30 7.87 16 LS Contribution 275.65 15.07 4.15 4.15 Total: -1.00 -30.02 275.65 -5.52 -35.54 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.08 Total: 12.58 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -1.15 Total: -13.82 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.92 Total: -39.01 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.33 Total: -14.15 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.02 -5.52 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.808 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds