Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47115 * 2 1 4 4 C 1.36100 * 117.00262 * 179.97438 * 3 2 1 5 5 C 1.38681 * 119.89096 * 0.02562 * 4 3 2 6 6 C 1.38651 * 120.64881 * 179.97438 * 5 4 3 7 7 C 1.38082 * 120.41999 * 0.02562 * 6 5 4 8 8 O 1.35771 * 120.11998 * 179.97438 * 7 6 5 9 9 C 1.42903 * 116.99951 * 359.97438 * 8 7 6 10 10 C 1.41330 * 119.76621 * 0.02562 * 7 6 5 11 11 C 1.40916 * 120.31332 * 179.97438 * 10 7 6 12 12 H 1.08002 * 120.00087 * 141.18115 * 11 10 7 13 13 C 1.39900 * 120.00127 * 321.18270 * 11 10 7 14 14 N 1.30936 * 119.99604 * 339.63082 * 13 11 10 15 15 Si 1.86796 * 120.00185 * 159.63431 * 13 11 10 16 16 H 1.48494 * 109.47565 * 89.99817 * 15 13 11 17 17 H 1.48503 * 109.47198 * 210.00187 * 15 13 11 18 18 H 1.48506 * 109.47065 * 329.99464 * 15 13 11 19 19 C 1.38864 * 119.89598 * 179.72877 * 4 3 2 20 20 N 1.39189 * 120.21111 * 359.97438 * 19 4 3 21 21 H 1.08993 * 109.47300 * 60.00041 * 1 2 3 22 22 H 1.09007 * 109.47139 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47303 * 299.99637 * 1 2 3 24 24 H 1.09003 * 109.47357 * 119.99974 * 2 1 3 25 25 H 1.09001 * 109.47186 * 240.00118 * 2 1 3 26 26 H 1.08004 * 119.67635 * 359.97438 * 5 4 3 27 27 H 1.08002 * 119.79310 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47271 * 180.02562 * 9 8 7 29 29 H 1.08996 * 109.47788 * 300.00352 * 9 8 7 30 30 H 1.08998 * 109.46736 * 60.00547 * 9 8 7 31 31 H 0.97006 * 119.99177 * 180.02562 * 14 13 11 32 32 H 0.97004 * 119.99617 * 359.97438 * 20 19 4 33 33 H 0.96997 * 120.00497 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3555 1.5256 0.0005 5 6 4.1983 0.4242 0.0005 6 6 5.5751 0.5878 0.0005 7 6 6.1289 1.8527 0.0011 8 8 7.4780 2.0057 0.0016 9 6 8.2662 0.8137 0.0022 10 6 5.2866 2.9875 0.0022 11 6 5.8394 4.2837 0.0033 12 1 5.3809 5.0668 -0.5822 13 6 6.9822 4.5561 0.7629 14 7 7.3092 3.7707 1.7583 15 14 8.0415 6.0402 0.3573 16 1 7.5565 7.2181 1.1204 17 1 9.4519 5.7575 0.7266 18 1 7.9585 6.3247 -1.0979 19 6 3.8839 2.8098 -0.0051 20 7 3.0381 3.9152 -0.0119 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.7780 -0.5707 0.0005 27 1 6.2185 -0.2796 0.0001 28 1 9.3238 1.0774 0.0030 29 1 8.0376 0.2273 0.8920 30 1 8.0384 0.2272 -0.8879 31 1 8.1014 3.9598 2.2852 32 1 2.0762 3.7897 -0.0130 33 1 3.4104 4.8108 -0.0155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -72.297664 kcal Electronic energy + Delta-G solvation = -17132.378968 eV Core-core repulsion = 14350.926942 eV Total energy + Delta-G solvation = -2781.452025 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75760 -39.37997 -37.31491 -35.04784 -34.34461 -32.33975 -30.86188 -28.39246 -27.82510 -26.68448 -24.35905 -22.20875 -21.88518 -19.53562 -18.28112 -17.95324 -17.60470 -16.76145 -16.58165 -15.97494 -15.93546 -15.64755 -15.14341 -14.51426 -14.08684 -13.73547 -13.44652 -13.35123 -13.04390 -12.98827 -12.70385 -12.60761 -12.21415 -12.08789 -11.92597 -11.87819 -11.27536 -11.09970 -10.69174 -10.52293 -8.63208 -8.31978 -7.71045 -5.96982 1.02613 1.30159 1.45179 1.51287 1.58012 2.36079 2.68172 2.95168 3.09445 3.72960 3.73270 4.17637 4.24361 4.42007 4.47741 4.53113 4.57709 4.64636 4.77406 4.83085 5.01710 5.03708 5.23744 5.33444 5.45125 5.54704 5.77950 5.84417 6.13459 6.49520 6.67453 6.90273 7.14411 7.25079 7.50513 7.56290 8.65224 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.008263 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.353758 B = 3387.697115 C = 4133.493210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.339 6.339 4 C 0.023 3.977 5 C -0.226 4.226 6 C -0.218 4.218 7 C 0.061 3.939 8 O -0.304 6.304 9 C 0.028 3.972 10 C 0.030 3.970 11 C -0.502 4.502 12 H 0.070 0.930 13 C 0.055 3.945 14 N -0.813 5.813 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.267 1.267 19 C 0.114 3.886 20 N -0.866 5.866 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.276 0.724 32 H 0.394 0.606 33 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -5.504 -2.326 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.255 6.255 4 C -0.025 4.025 5 C -0.246 4.246 6 C -0.239 4.239 7 C 0.015 3.985 8 O -0.217 6.217 9 C -0.068 4.068 10 C 0.024 3.976 11 C -0.533 4.533 12 H 0.088 0.912 13 C -0.160 4.160 14 N -0.440 5.440 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.191 1.191 19 C 0.011 3.989 20 N -0.410 5.410 21 H 0.082 0.918 22 H 0.118 0.882 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.222 0.778 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.743 -5.293 -2.136 7.421 hybrid contribution 0.610 0.282 0.081 0.677 sum -4.134 -5.011 -2.054 6.813 Atomic orbital electron populations 1.21753 0.91220 1.03891 1.02953 1.22795 0.96670 0.82088 1.00800 1.85854 1.18955 1.29769 1.90965 1.18156 0.82127 0.92534 1.09691 1.20374 0.92920 0.96697 1.14583 1.20614 0.95488 0.95207 1.12576 1.19088 0.82583 0.92987 1.03886 1.86149 1.15084 1.31577 1.88910 1.22929 0.95669 0.88023 1.00134 1.16606 0.87998 0.93220 0.99759 1.18888 1.11753 0.95495 1.27139 0.91248 1.26193 0.97568 0.99546 0.92696 1.69848 1.23249 1.37504 1.13412 0.85506 0.77853 0.78670 0.79295 1.19309 1.20100 1.19132 1.17215 0.89725 0.85534 1.06473 1.41618 1.06587 1.05350 1.87403 0.91836 0.88234 0.92072 0.92996 0.92611 0.85571 0.86332 0.88458 0.94193 0.93188 0.91395 0.77819 0.77701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.05 1.53 5.46 71.98 0.39 1.92 16 3 O -0.34 -13.43 9.36 -94.69 -0.89 -14.31 16 4 C 0.02 1.05 6.69 22.53 0.15 1.20 16 5 C -0.23 -9.96 9.03 22.47 0.20 -9.76 16 6 C -0.22 -10.20 9.02 22.33 0.20 -10.00 16 7 C 0.06 3.25 6.17 22.99 0.14 3.39 16 8 O -0.30 -15.46 7.39 -90.99 -0.67 -16.14 16 9 C 0.03 1.08 9.81 113.37 1.11 2.19 16 10 C 0.03 1.66 5.38 -21.09 -0.11 1.55 16 11 C -0.50 -27.63 8.03 23.33 0.19 -27.44 16 12 H 0.07 3.68 7.22 -2.91 -0.02 3.66 16 13 C 0.05 2.91 4.39 85.23 0.37 3.28 16 14 N -0.81 -44.75 11.26 21.83 0.25 -44.51 16 15 Si 0.96 41.03 29.61 68.60 2.03 43.06 16 16 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 C 0.11 5.73 6.80 38.90 0.26 5.99 16 20 N -0.87 -37.53 8.98 -50.15 -0.45 -37.98 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 25 H 0.06 1.58 7.65 -2.39 -0.02 1.56 16 26 H 0.13 4.70 6.25 -2.91 -0.02 4.68 16 27 H 0.12 4.83 6.26 -2.91 -0.02 4.82 16 28 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 30 H 0.05 1.70 7.66 -2.39 -0.02 1.69 16 31 H 0.28 14.07 8.30 -92.70 -0.77 13.30 16 32 H 0.39 15.05 8.17 -92.71 -0.76 14.29 16 33 H 0.39 16.69 7.31 -92.71 -0.68 16.01 16 Total: -1.00 -64.71 275.65 3.63 -61.07 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.29 Total: 38.78 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.65 Total: -29.97 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -0.20 Total: -82.49 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.56 Total: -30.45 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -64.71 3.63 -61.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.224 kcal (2) G-P(sol) polarization free energy of solvation -64.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds