Wall clock time and date at job start Mon Mar 30 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46850 * 2 1 4 4 C 1.50699 * 109.47478 * 240.00309 * 2 1 3 5 5 H 1.07998 * 119.99633 * 240.00519 * 4 2 1 6 6 C 1.37874 * 120.00114 * 59.99129 * 4 2 1 7 7 N 1.31515 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47306 * 60.00367 * 8 6 4 10 10 H 1.48507 * 109.46884 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47279 * 300.00409 * 8 6 4 12 12 C 1.50699 * 109.47425 * 119.99667 * 2 1 3 13 13 O 1.21287 * 120.00047 * 120.00040 * 12 2 1 14 14 N 1.34782 * 120.00175 * 300.00489 * 12 2 1 15 15 C 1.46499 * 120.00108 * 179.97438 * 14 12 2 16 16 C 1.52999 * 109.47248 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47311 * 179.97438 * 16 15 14 18 18 C 1.41388 * 126.57799 * 89.99880 * 17 16 15 19 19 C 1.34515 * 106.83843 * 180.02562 * 18 17 16 20 20 O 1.34304 * 108.42331 * 0.02562 * 19 18 17 21 21 C 1.34305 * 109.47208 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.46712 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47027 * 299.99998 * 1 2 3 24 24 H 1.08993 * 109.46985 * 60.00253 * 1 2 3 25 25 H 0.97006 * 119.99399 * 179.97438 * 7 6 4 26 26 H 0.96998 * 119.99720 * 359.97438 * 14 12 2 27 27 H 1.09001 * 109.46868 * 59.99821 * 15 14 12 28 28 H 1.08999 * 109.47057 * 299.99979 * 15 14 12 29 29 H 1.08997 * 109.46605 * 59.99806 * 16 15 14 30 30 H 1.09005 * 109.46901 * 300.00375 * 16 15 14 31 31 H 1.08001 * 126.57691 * 0.26428 * 18 17 16 32 32 H 1.07999 * 125.78383 * 179.97438 * 19 18 17 33 33 H 1.08004 * 125.78137 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8301 -2.6033 8 14 2.3215 -1.1203 -4.0079 9 1 1.8261 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9407 3.6508 16 6 1.6853 -0.2191 4.9000 17 6 2.1867 -0.9301 6.1305 18 6 3.3948 -0.6731 6.8186 19 6 3.4451 -1.5327 7.8520 20 8 2.3382 -2.2928 7.8261 21 6 1.5713 -1.9316 6.7843 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7093 1.1617 -3.4844 26 1 1.1494 0.5389 2.5436 27 1 3.2847 -0.9411 3.6509 28 1 1.8311 -1.9683 3.6506 29 1 0.5954 -0.2184 4.9000 30 1 2.0493 0.8084 4.8999 31 1 4.1334 0.0732 6.5655 32 1 4.2411 -1.6007 8.5787 33 1 0.6219 -2.3713 6.5166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598203394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:19 Heat of formation + Delta-G solvation = -59.409319 kcal Electronic energy + Delta-G solvation = -16057.831817 eV Core-core repulsion = 13276.938673 eV Total energy + Delta-G solvation = -2780.893145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.42414 -40.53750 -36.80230 -35.74966 -34.46896 -32.59394 -31.24735 -29.23855 -27.18375 -25.21142 -23.53375 -22.46244 -21.47938 -20.77730 -18.36225 -18.32312 -17.67717 -16.93502 -16.69886 -16.41478 -16.18864 -15.49567 -15.17337 -14.71084 -14.38401 -13.67993 -13.60316 -13.34316 -13.29714 -13.05296 -12.95781 -12.68231 -12.57373 -12.21582 -12.02994 -11.99801 -11.03927 -10.66213 -10.56099 -10.29184 -9.96414 -9.42359 -8.14366 -6.24726 0.89054 1.41610 1.43139 1.51748 1.65035 1.94164 2.30926 2.40034 2.59098 3.15118 3.90593 3.99926 4.08958 4.20181 4.36873 4.42031 4.62282 4.77117 4.82105 4.84922 4.96824 5.02278 5.09162 5.22975 5.34984 5.51539 5.58447 5.62704 5.76527 5.96045 6.22322 6.23376 6.75989 6.88050 7.40769 7.56331 8.91233 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.060421 B = 0.004151 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.303882 B = 6743.018096 C = 6951.290764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.043 0.957 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.592 6.592 14 N -0.725 5.725 15 C 0.129 3.871 16 C -0.046 4.046 17 C -0.195 4.195 18 C -0.229 4.229 19 C -0.043 4.043 20 O -0.191 6.191 21 C -0.043 4.043 22 H 0.022 0.978 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.265 0.735 26 H 0.412 0.588 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.234 0.766 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 0.238 19.584 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.378 5.378 15 C 0.005 3.995 16 C -0.084 4.084 17 C -0.197 4.197 18 C -0.248 4.248 19 C -0.110 4.110 20 O -0.087 6.087 21 C -0.110 4.110 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.249 0.751 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.174 0.826 32 H 0.250 0.750 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.166 -0.567 19.586 19.595 hybrid contribution 0.325 0.053 -1.121 1.169 sum 0.159 -0.515 18.464 18.472 Atomic orbital electron populations 1.21553 0.94840 0.99420 1.01872 1.18827 0.95524 0.95961 0.89552 0.93936 1.21275 1.31692 1.12779 0.91278 0.93509 1.25585 0.95181 0.95757 1.01370 1.69941 1.37154 1.23510 1.24374 0.85664 0.78649 0.78752 0.78880 1.20189 1.19807 1.20249 1.21596 0.78185 0.83673 0.85770 1.90507 1.40111 1.28890 1.87642 1.45996 1.54412 1.32650 1.04772 1.21235 0.98296 0.96063 0.83914 1.20036 1.01853 0.98779 0.87718 1.20450 0.97522 1.01377 1.00303 1.22072 0.99824 1.04543 0.98384 1.24674 0.90610 0.93436 1.02251 1.84077 1.28772 1.52186 1.43625 1.24408 0.98880 0.99018 0.88704 0.95926 0.92622 0.91108 0.92565 0.75125 0.93750 0.93220 0.88565 0.89284 0.82632 0.74964 0.75944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.87 71.98 0.64 -4.74 16 2 C 0.02 1.14 2.64 -12.29 -0.03 1.11 16 3 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.53 -31.27 8.37 25.60 0.21 -31.06 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -51.31 11.32 21.45 0.24 -51.07 16 8 Si 0.95 45.31 29.54 68.60 2.03 47.33 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 C 0.52 24.22 7.15 87.66 0.63 24.85 16 13 O -0.59 -32.57 15.46 -3.05 -0.05 -32.61 16 14 N -0.72 -24.44 5.45 -463.05 -2.52 -26.96 16 15 C 0.13 3.76 5.66 86.38 0.49 4.25 16 16 C -0.05 -0.93 5.84 29.85 0.17 -0.75 16 17 C -0.19 -4.03 5.42 -19.94 -0.11 -4.14 16 18 C -0.23 -4.44 10.87 22.19 0.24 -4.20 16 19 C -0.04 -0.71 12.09 66.97 0.81 0.10 16 20 O -0.19 -3.79 10.65 -2.51 -0.03 -3.81 16 21 C -0.04 -0.81 12.01 66.97 0.80 0.00 16 22 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.05 1.98 7.56 -2.39 -0.02 1.96 16 24 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 25 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 26 H 0.41 11.16 7.89 -92.71 -0.73 10.43 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -71.79 287.57 4.36 -67.43 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.38 Total: 12.69 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.31 Total: -12.99 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -2.28 Total: -78.03 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.07 Total: -36.43 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.79 4.36 -67.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598203394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.025 kcal (2) G-P(sol) polarization free energy of solvation -71.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds