Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45204 * 109.47398 * 2 1 4 4 C 1.34227 * 117.00218 * 180.02562 * 3 2 1 5 5 O 1.20824 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99885 * 179.97438 * 4 3 2 7 7 H 1.08995 * 109.47700 * 300.00324 * 6 4 3 8 8 C 1.47198 * 109.46916 * 60.00348 * 6 4 3 9 9 N 4.97824 * 108.59082 * 26.82689 * 2 1 3 10 10 C 1.53004 * 109.46960 * 180.02562 * 6 4 3 11 11 C 1.53000 * 109.47112 * 174.39635 * 10 6 4 12 12 C 1.50696 * 115.55181 * 304.93185 * 11 10 6 13 13 H 1.07998 * 120.00698 * 99.49133 * 12 11 10 14 14 C 1.37883 * 119.99707 * 279.49601 * 12 11 10 15 15 N 1.31513 * 120.00175 * 5.37604 * 14 12 11 16 16 Si 1.86798 * 119.99799 * 185.38038 * 14 12 11 17 17 H 1.48501 * 109.46989 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47187 * 299.99575 * 16 14 12 19 19 H 1.48500 * 109.47245 * 59.99875 * 16 14 12 20 20 C 1.53003 * 117.51875 * 90.63072 * 11 10 6 21 21 C 1.52989 * 60.00059 * 107.48031 * 20 11 10 22 22 H 1.08997 * 109.47471 * 179.97438 * 1 2 3 23 23 H 1.09011 * 109.47090 * 299.99999 * 1 2 3 24 24 H 1.09000 * 109.47203 * 59.99417 * 1 2 3 25 25 H 1.08998 * 109.46787 * 240.00128 * 2 1 3 26 26 H 1.08995 * 109.47337 * 119.99883 * 2 1 3 27 27 H 1.08995 * 109.47014 * 54.39794 * 10 6 4 28 28 H 1.09004 * 109.47019 * 294.39226 * 10 6 4 29 29 H 0.96998 * 120.00024 * 174.99555 * 15 14 12 30 30 H 1.08999 * 117.50136 * 214.97320 * 20 11 10 31 31 H 1.09001 * 117.49925 * 359.97438 * 20 11 10 32 32 H 1.08999 * 117.50404 * 252.51051 * 21 20 11 33 33 H 1.09003 * 117.50166 * 107.48953 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5845 3.4693 -0.8911 8 6 3.4675 3.6563 1.2007 9 7 3.1171 4.2106 2.1294 10 6 5.4486 2.8573 -0.0023 11 6 6.0330 4.2642 -0.1438 12 6 5.5552 5.0494 -1.3380 13 1 4.7769 5.7890 -1.2219 14 6 6.1118 4.8235 -2.5791 15 7 6.9828 3.8517 -2.7422 16 14 5.6287 5.8978 -4.0289 17 1 6.3628 5.4532 -5.2408 18 1 4.1672 5.7828 -4.2649 19 1 5.9727 7.3119 -3.7334 20 6 6.3248 5.0411 1.1416 21 6 7.4785 4.4777 0.3097 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.7795 2.2407 -0.8381 28 1 5.7900 2.4145 0.9334 29 1 7.3195 3.6458 -3.6283 30 1 6.1711 6.1200 1.1235 31 1 6.1000 4.5500 2.0885 32 1 8.0132 3.6159 0.7091 33 1 8.0840 5.1860 -0.2558 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691691498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = -46.328928 kcal Electronic energy + Delta-G solvation = -16759.856592 eV Core-core repulsion = 13979.530656 eV Total energy + Delta-G solvation = -2780.325936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41107 -37.51053 -36.35200 -35.68576 -32.28598 -32.02687 -31.36580 -25.93283 -25.00871 -23.07335 -21.35771 -20.93555 -19.40803 -18.18153 -17.11960 -16.41851 -15.93364 -15.47502 -14.65182 -14.02774 -13.81378 -13.65250 -13.46442 -12.89837 -12.75735 -12.45403 -12.15845 -11.85150 -11.66315 -11.52526 -11.37715 -10.99297 -10.87655 -10.76393 -10.52428 -10.46359 -10.24933 -10.12409 -9.51476 -8.89014 -8.52686 -8.10828 -6.10937 -4.20315 2.31305 2.63478 3.22846 3.25986 3.32378 3.35045 3.38385 4.33215 4.36349 4.88258 4.89841 5.00780 5.16076 5.22595 5.24918 5.55550 5.65717 5.71528 5.87270 5.92807 6.16478 6.36302 6.49830 6.61719 6.65812 6.75981 6.99596 7.11778 7.42437 7.48757 7.79954 7.87966 8.01299 8.34377 8.82888 9.47231 10.96676 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.007915 C = 0.006896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.233112 B = 3536.817067 C = 4059.552265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.475 3.525 5 O -0.490 6.490 6 C 0.029 3.971 7 H 0.162 0.838 8 C 0.236 3.764 9 N -0.433 5.433 10 C -0.053 4.053 11 C 0.041 3.959 12 C -0.506 4.506 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.872 5.872 16 Si 0.887 3.113 17 H -0.287 1.287 18 H -0.275 1.275 19 H -0.276 1.276 20 C -0.212 4.212 21 C -0.156 4.156 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -6.386 2.127 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.315 3.685 5 O -0.376 6.376 6 C 0.007 3.993 7 H 0.179 0.821 8 C -0.082 4.082 9 N -0.110 5.110 10 C -0.092 4.092 11 C 0.040 3.960 12 C -0.544 4.544 13 H 0.079 0.921 14 C -0.128 4.128 15 N -0.508 5.508 16 Si 0.714 3.286 17 H -0.212 1.212 18 H -0.200 1.200 19 H -0.202 1.202 20 C -0.249 4.249 21 C -0.193 4.193 22 H 0.096 0.904 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.474 -5.939 3.392 10.890 hybrid contribution 0.046 0.211 -1.272 1.290 sum -8.428 -5.728 2.121 10.409 Atomic orbital electron populations 1.21802 0.92822 1.02718 1.03598 1.23019 0.95262 0.80489 1.02659 1.86554 1.24659 1.32202 1.84052 1.23465 0.80425 0.92183 0.72399 1.90669 1.60296 1.42394 1.44234 1.18794 0.99456 0.87237 0.93789 0.82080 1.28276 0.92469 0.93749 0.93715 1.81115 1.09595 1.08882 1.11387 1.21110 0.86085 0.99815 1.02207 1.18820 0.94573 0.90801 0.91767 1.20397 1.21345 1.21370 0.91250 0.92058 1.24977 0.94136 0.95054 0.98647 1.69954 1.29403 1.28605 1.22831 0.86741 0.78725 0.81234 0.81860 1.21231 1.20032 1.20176 1.23011 1.07337 0.99367 0.95174 1.22547 0.92550 1.01370 1.02863 0.90415 0.91580 0.91346 0.90966 0.91339 0.88164 0.93427 0.92685 0.90527 0.91927 0.91705 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -5.43 10.13 -39.25 -0.40 -5.83 16 4 C 0.47 8.20 7.23 36.00 0.26 8.46 16 5 O -0.49 -9.32 15.66 -18.75 -0.29 -9.61 16 6 C 0.03 0.53 2.54 -94.56 -0.24 0.29 16 7 H 0.16 2.90 7.23 -51.93 -0.38 2.53 16 8 C 0.24 4.47 13.36 -20.73 -0.28 4.19 16 9 N -0.43 -8.65 18.54 42.19 0.78 -7.87 16 10 C -0.05 -1.11 3.98 -26.73 -0.11 -1.21 16 11 C 0.04 0.93 1.04 -155.66 -0.16 0.77 16 12 C -0.51 -12.53 7.65 -34.44 -0.26 -12.79 16 13 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 14 C 0.08 1.93 5.42 -17.82 -0.10 1.83 16 15 N -0.87 -22.92 13.10 55.43 0.73 -22.20 16 16 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.21 -4.57 9.16 -26.74 -0.24 -4.81 16 21 C -0.16 -3.52 9.70 -26.74 -0.26 -3.78 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 26 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 27 H 0.10 2.27 7.93 -51.93 -0.41 1.85 16 28 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 30 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 297.49 15.07 4.48 4.48 Total: -1.00 -27.60 297.49 -5.06 -32.66 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.56 Total: 0.75 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.78 Total: -7.09 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 1.51 Total: -30.06 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.69 Total: -15.44 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.60 -5.06 -32.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691691498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds